BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25160.1
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932640 jgi|Araly1|932640|scaffold_400628.1 2386 0.0
> Ahg932640 jgi|Araly1|932640|scaffold_400628.1
Length=1624
Score = 2386 bits (1292), Expect = 0.0
Identities = 1518/1627 (93%), Gaps = 15/1627 (1%)
Strand=Plus/Plus
Query 12 AAATCAAATCAGCCATACATGGATCTAAT-CATGCTTTTTCTTCTCTCTGCTCTCTTC-A 69
||| ||||||||||||||||||||||||| || |||||||||||||||||||||| || |
Sbjct 3 AAAACAAATCAGCCATACATGGATCTAATCCA-GCTTTTTCTTCTCTCTGCTCTC-TCTA 60
Query 70 TCTTCCCTGTTTTAAT-CTTAATTAAGTCTCGGCTTCGTCCCAAGAACAAGAAGAGTACA 128
| ||| || ||| || |||||| ||||||| ||||||||||||||||| || || |||
Sbjct 61 TTTTCTTTG-TTTCATGCTTAATAAAGTCTCTGCTTCGTCCCAAGAACAGGACGAATACG 119
Query 129 GCACCTATGGTCCCCGGAGCATGGCCATTGCTCGGTCATTTACATTTATTTGACACCGTA 188
||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 120 GCACCTATGATCCCCGGAGCGTGGCCATTGCTCGGCCATTTACATCTATTTGACACCGTA 179
Query 189 AACCCGACTCACGTTACGTTTGGGGCAATGGCTGACGTGTATGGACCGGTGTTCATGGCA 248
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AACCCAACTCACGTTACGTTTGGGGCAATGGCTGACGTCTATGGACCGGTGTTCATGGCA 239
Query 249 AAGCTTGGCTCTATCAAAGTCATGATCATAAACAGCAAAGAAGTGGCCAAAGAGATTTAC 308
|||||||||||| |||| |||||| |||||||||||||||| || || |||||||| |||
Sbjct 240 AAGCTTGGCTCTCTCAACGTCATGGTCATAAACAGCAAAGATGTCGCAAAAGAGATCTAC 299
Query 309 ACGGTCCACGACAAGCTCCTAGAACGACCAGAACTTACTGCGTCTAAGCTTCTAGGCTAC 368
||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||||||
Sbjct 300 ACGGTCCACGACAAGGTCCTAGAACGGCCACAACTTACTGCGTCTAAGATTCTGGGCTAC 359
Query 369 AACGACTCGTTCTTGACGTTTAGTCCTTACGGTCTTTACTGGAGAGAGATACGGAAGATT 428
||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AACAACTCGTTCTTGTCGTTTAGTCCTTATGGTCTTTACTGGAGAGAGATACGGAAGATA 419
Query 429 GCAGTATCCGAGCTTTTCTCGACATCCGGG-GTTGATATGCACATGGTTAGTAGAGCACG 487
||| |||||||||||| ||||| | |||| ||||||||| |||| |||||||||||||
Sbjct 420 GCAACATCCGAGCTTTTTTCGACCT-CGGGAATTGATATGCTCATGTTTAGTAGAGCACG 478
Query 488 TGAGGCTGACTTGGCATTTAGAGCCTTATACGTTAGATGGGAGAAAAGAGGTAAGCCTAA 547
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 479 TGAGGCTGACTTGGCATTTAGAGACTTATACGTTAGATGGGAGAAAAGAGGTGAGCCTAA 538
Query 548 AGAAGGAGTCTTGGTGGACATGAAGCAAGAGTTCATAGATCTAACTGCGAACATCTCATT 607
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 539 AGAAGGAGTCTTGGTGGACATGAAGCAAGAGATCATAGATCTAACCGCGAACATCTCATT 598
Query 608 GATGATGGTCTCGGGGAAGAGATACTTTGGTGAAAACCCGAACTGCGAAGTGAAAGAAGC 667
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 GATGATGGTCGCGGGGAAGAGATACTTTGGTGAAAACCCTAACTGCGAAGTGAAAGAAGC 658
Query 668 TAGGAGATGCGGGAAGCTGATTCGGGAGTTTTTGGATTACTTCGCACTATTTTTGTTGTC 727
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||
Sbjct 659 TAGGAGATGCGGGAAGCTGATTCGCGAGTTTTTGGATTACTTCTCACTATATTTGTTGTC 718
Query 728 CGATGTGGCACCAGTTCTAGGTTTTCTT-GATTGGAAGACCAAGAGAGGAATGAAGAGAA 786
|||||| |||| |||||||| ||| || || ||||||| ||||||||||||||||||||
Sbjct 719 TGATGTGACACCGGTTCTAGG-TTTGTTGGAGTGGAAGATCAAGAGAGGAATGAAGAGAA 777
Query 787 CGGCTAAAGGGTTGGATAAAGTTGCTGAAGGTTGGATTGAAGAACACAAGAACAAGAGGA 846
||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 778 CGGCTAAAGAGTTGGATAAAGTTATTGAAGGTTGGGTTGAAGAACACAAGAACAAGAGGA 837
Query 847 GTGATCACGGTAGGAGTGAAAATGACTACTTGGATATACTCATTAAGATATTGGGACAAG 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 838 GTGATCACGGTAGGAGTGAAAATGACTACTTGGATATACTCATTAAGATATTGGGACATG 897
Query 907 ACAAGATTCCTGGTTTGAGTGATACTCACACGAAAATTAAAGCCCTCTGCCTCAACTTGG 966
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 ACAAGATTCCGGGTTTGAGCGATACTCACACGAAAATCAAAGCCCTCTGCCTCAACTTGG 957
Query 967 TATTGGCAGGGAGCGAGACGGCCATTGTGGTTCTGGTTTGGGCGGTATCCTTGCTCTTGA 1026
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TATTGGCTGGGAGCGAGACGGCCATTGTGGTTCTGGTTTGGGCGGTATCCTTGCTCTTGA 1017
Query 1027 ACAACCCGCATGTCTTGAGGAAAGCTCAGGAGGAGCTGGACAGCAAAATTGGAAAGGAGA 1086
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACAATCCGCATGTATTGAGGAAAGCTCAGGAGGAGCTGGACAGCAAAATTGGAAAGGAGA 1077
Query 1087 GAGTTGTGGAAGAGTTAGACATCAAAGATTTGGTTTACCTCCAAGCCATTGTCAAGGAGA 1146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGTTGTGGAAGAGCTAGACATCAAAGATTTGGTTTACCTCCAAGCCATTGTCAAGGAGA 1137
Query 1147 CATTTCGTCTATACCCACCAGTCCCTCTCGTTGCTTACAGAGCTGTGGTGGAAGATTTCG 1206
||||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1138 CATTTCGCCTGTACCCACCAGTCCCTCTCATTGCTTACAGAGATGTGGTGGAAGATTTCG 1197
Query 1207 ACATTGCATTTTGCAAATGTCATGTACCTGCAGGGACACAATTGATGGTGAGTGCATGGA 1266
||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1198 ACATTGCATGTTGCAACTGTCATGTGCCTGCGGGGACACAATTGATGGTGAGTGCATGGA 1257
Query 1267 AGATTCACAGGGATCCAAATGTTTGGTCGAACCCCGAACAGTTCGAGCCAGAGAGATTCT 1326
||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1258 AGATTCATAGGGATCCAAGTGTTTGGTCCAACCCCGAACAGTTTGAGCCAGAGAGATTCT 1317
Query 1327 TGACATCTAATAGAGAATTGGATGTTGGCGGGCAGAGTTACAAGTTTTTTCCATTT-GGG 1385
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||
Sbjct 1318 TGACATCTAATAGAGAATTGGATGTTGGAGGGCTGAGTTACAAGTTTTTTCC-TTTCGGG 1376
Query 1386 TTGGGACGAAGGTCATGCCCCGCAATCCCCCTAGGTATGAGGATGGTGCACTATCTCCTA 1445
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1377 TTGGGACGAAGGTCATGCCCCGCGATCCCCCTAGGTATGAGGATGGTGCAGTATCTCCTA 1436
Query 1446 G-TCAGGTTTTTGCACAGCTTTGACTTGGCAAGACCATCGAGTCAAGATGTGGACATGAC 1504
| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1437 GCT-AGGTTTTTGCACAGCTTTGACTTGGCAAGACCATCGAGCCAAGATGTGGACATGAC 1495
Query 1505 CGAGAGCAATGGATTGGTCAATCACAAAGCCACCCCTCTTGAAGTCAATATCATTCCTAG 1564
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1496 CGAGAGCAATGGATTGGTCAATCACAAAGCCACTTCTCTTGAAGTCTTTATCACTCCTAG 1555
Query 1565 GCTTCATAAATCTCTATATGAAGTGGATCATATAGGGACTGATAATTAGTACATTGTTCG 1624
|||||||||||| ||||| ||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1556 GCTTCATAAATCCCTATACGAAGTTGATCACATAGGGATTGATAATTAGTACATTGTTCG 1615
Query 1625 T-GGCCA 1630
| |||||
Sbjct 1616 TTGGCCA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67000740955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5