BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25670.1 Length=1690 Score E Sequences producing significant alignments: (Bits) Value Ahg932734 jgi|Araly1|932734|scaffold_400722.1 1642 0.0 Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699 588 5e-167 > Ahg932734 jgi|Araly1|932734|scaffold_400722.1 Length=1068 Score = 1642 bits (889), Expect = 0.0 Identities = 1019/1079 (94%), Gaps = 19/1079 (2%) Strand=Plus/Plus Query 317 TAGCTGAATCGT-TGTTAAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCA 375 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAGCTGAATCGTGTGTTAAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCA 60 Query 376 CGATCCAGAGCACTAATTTGTTTGCAGCATTGGACACTCGTAAGAAGAAGAAGAAGTCTG 435 |||||||||| || |||||||||||||| ||||| ||||||||||||||||||||| | Sbjct 61 CGATCCAGAGTACCAATTTGTTTGCAGCTTTGGATACTCGTAAGAAGAAGAAGAAG--T- 117 Query 436 ACAAGGCAGGGAAGAGCAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGC 495 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 ------CAGGGAAGAACAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGC 171 Query 496 CTCAGGTCTATTGGGCTCCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGATGATG 555 ||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 172 CTCAGGTCTTTTGGGCACCTACTCCGTTGAAAGTTAAGTCTTGGGCTGATATTGATGATG 231 Query 556 AAGACGACGATGATGACTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTT 615 | || || ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 232 ACGATGATGATGATGACTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGCACTT 291 Query 616 CTCTGCCTTCCCATACTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAG 675 || ||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| | Sbjct 292 CTGTGCCTTCCCATTCGGATTCGAAAGACGTTCATGTCGAGGAAAGTGAAAGTGAGGACG 351 Query 676 ATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTAC 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 ATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTAC 411 Query 736 AGGTTCATCC--A----GAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTA 789 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGGTTCATCCAGAGCCTGAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTA 471 Query 790 AAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTG 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 AAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTG 531 Query 850 AAGCTTTGTTGGCTGATTTTGGAGTTGCCCCCAAGGAGAACAATGGCCTAGAGGAATCTC 909 | |||||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||| || Sbjct 532 AGGCTTTGTTGGCTGATTTTGGTGTTGCTCCCAAGGAGAATAATGGCCAAGATGAATTTC 591 Query 910 aagaggctggacaagaaaagaaagaagatgtcaatggagagggagagaagaaggagaaTG 969 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 AAGAGGCCAAACATGAAAAGAAAGAAGATGTCAATGGAGAGGGAGAGAAGAAGGAGAATG 651 Query 970 CAGCAGGTGGGGAGTCaaaggcatcaaaaaagaagaaaaagaaggataagcagaaggagg 1029 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 652 CAGCAGGTGGGGAGTCAAAGGCATCAAAAAAGAAGAAGAAGAAGGATAAGCAGAAGGAGG 711 Query 1030 taaaagaatctcaagagcaacaagcaaaCAACAATGCCGATGCTGTAGATGAAGCTGCTG 1089 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 712 TAAAAGAATCTCAAGAGCAGCAAGCAAACAACAATGCTGATGCTGTAGATGAAGCTGCTG 771 Query 1090 GGTCTGAACCAACTGAGGAAGAATCTCCAATTGACGTCAAGGAAAGGAT-AAAGAAGCTT 1148 ||||||||||||||||||||||| |||||||||| ||||| |||||| | ||| |||||| Sbjct 772 GGTCTGAACCAACTGAGGAAGAAACTCCAATTGATGTCAAAGAAAGGCTGAAA-AAGCTT 830 Query 1149 GCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCG 1208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 GCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCG 890 Query 1209 GAGGAGGCAGCTGCAAGACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCAC 1268 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 891 GAGGAAGCAGCTGCAAGACGTAAGAAGCTGGCCGCTGCAAAGAAGAAGGAGAAGAACCAC 950 Query 1269 TATAACCAACAGCCTGTGCGGTAAAATCCTGAATCACCACCATTTTGATCTTGATGGAAA 1328 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 951 TATAACCAACAGCCTGTGCGGTAAA-TCCTGAATCATCACCATTTTGATCTTGATGGAAA 1009 Query 1329 TGCAAATATGAACATGTATTTCGCCGTATATTGTTCATATGAGTCTCTGTCCTAATAAA 1387 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 TGCAAATATGAACATGTATTTCGCCGTATATTGTTCATATGAGTCTCTGTCCTAATAAA 1068 > Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699 Length=1650 Score = 588 bits (318), Expect = 5e-167 Identities = 766/972 (79%), Gaps = 72/972 (7%) Strand=Plus/Plus Query 336 ATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGAT-CACGATCCAGAGCACTAATTT 394 |||| ||| |||||||||||||||||||| |||||||| | |||| |||| ||| || || Sbjct 1 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGC-CGATTCAGAACACCAACTT 59 Query 395 GTTTGCAGCATTGGACAC-TCGTAAGAAGAAGAAGAAGTCTGACAAGGCAGGGAAGAGCA 453 |||||| || ||||| || | | | ||||||||||||||| || ||||| || ||||||| Sbjct 60 GTTTGCTGCTTTGGATACTTTG-AGGAAGAAGAAGAAGTCAGATAAGGCTGGTAAGAGCA 118 Query 454 AAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTAT-TGGGCT 512 ||| || |||||| || || || | |||||||||||||| ||||||| | ||||| Sbjct 119 AAGCTTCCTCTAAGGGACAAGTTTCACAAAAGGAGCCTGAGCCACAGGTCT-TCTGGGCA 177 Query 513 CCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGATGA-TGAAGACGACGATGATGA 571 ||||||||| | |||| ||| ||||||| ||||| ||| | || || || ||||| || Sbjct 178 CCTACGCCTCTCAAAGCAAAGGCTTGGGCCGATATCGAT-AGCGATGATGAAGATGACGA 236 Query 572 CTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTTCT-CTGCCTTCCCATA 630 |||||| || ||| ||||||| |||||||| | |||||| |||||| ||| |||||| Sbjct 237 CTATTACGCTACCTCTGCTCCACCTCAGTCCGTTTGGAGCACTTCTGAAGCC-TCCCATT 295 Query 631 CTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAGATATTCTTGATGAA- 689 | ||| | ||||||||||| | ||||||||||||||| || ||||| | |||||||||| Sbjct 296 CCGATGCTAAAGACGTTCACGCTGAGGAAAGTGAAAGCGAAGAAGACACTCTTGATGAAG 355 Query 690 G-G-TGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGTTCAT-C-- 744 | | |||||| |||||||||||||||||||| |||| |||||| | ||| |||||| | Sbjct 356 GAGATGATGACGATGTGGAGGAAGAGCAGGAGCAGGGAACAGA-G-ACA-GTTCATCCAG 412 Query 745 ---CAGAGCCTGAGGTGAAGAAA-GCTCCTGAAGTTCCTGCACCTCCTAAAGAGGCAGAG 800 |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| Sbjct 413 AAGCAGAGCCTGAGGTGAA-AAAGGCTCCTGAAGTTCCTGCACCTCCTAAGGAGGCAGAG 471 Query 801 AGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAAGCTTTGTTG 860 |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 472 AGGCAACTGTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTCGAGGCTTTGTTA 531 Query 861 GCTGATTTTGGAGTTGCCCCCAAGGA-GAACAATGGCC-TAGAGGAATCTCaagaggctg 918 || ||||||||||| || ||||| || || ||||| | || || | |||||||| | Sbjct 532 GCAGATTTTGGAGTCGCACCCAAAGATGAG-AATGGTCATAAAG-ACTCTCAAGATAA-G 588 Query 919 gacaagaaaagaaagaagatgtcaatgga-gagggagagaagaaggagaaTGCAGCAGGT 977 || | || |||||||||| || |||| | ||||||||||||| |||||| || || Sbjct 589 GA-A-GAGAAGAAAGAAG-TG--AATG-ATGAGGGAGAGAAGAGGGAGAA--CA-CAACC 639 Query 978 GGGGAGTCaaaggcatcaaaaaagaagaaaaagaaggataagcagaaggaggtaaaagaa 1037 || || |||||||| ||||| |||||||||||||||||||| ||||| ||| |||||||| Sbjct 640 GGAGAATCAAAGGCCTCAAAGAAGAAGAAAAAGAAGGATAAACAGAAAGAGCTAAAAGAA 699 Query 1038 tctcaagagcaacaagcaaaCAACAATGCCGATGCTGTAGATGAAGCTGCTGGGTCTGAA 1097 | ||||||||| || | ||| ||| || ||| | | | | |||| Sbjct 700 G-TGAAGAGCAACT--CAGA------TGC---TGCA--AG-TGA-G-TCC-G---CTGAG 738 Query 1098 CCAACTGAGGAAGAAT-CT-C--CAATTGACGTCAAGGAAAGGATAAAGAAGCTTGCATC 1153 | | ||||| | | || | | ||||| ||||| ||| | |||||||| ||||||| Sbjct 739 C-AG--GAGGA-GTCTTCTTCTTCCATTGATGTCAAAGAACGTCTAAAGAAGATTGCATC 794 Query 1154 CATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAA-AGCTGCTGCGGAGG 1212 |||||||||||||| ||| ||||||||||||||| ||| | || ||| || || ||| Sbjct 795 AATGAAGAAGAAGAAATCAAGCAAAGAGGTGGATGGTGCCTC-AACAGCCGCCGCAAAGG 853 Query 1213 AGGCAGCTGCAAG-ACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCACTAT 1271 | |||||||| || | | | ||| |||||||||| ||||| || || ||||| |||| Sbjct 854 AAGCAGCTGCGAGGAAGGCA-AAGTTGGCCGCGGCGAAGAAAAAAGAAAAGAAAAACTAC 912 Query 1272 AACCAACAGCCT 1283 || || || ||| Sbjct 913 AATCAGCAACCT 924 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63382167680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5