BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25740.1 Length=2010 Score E Sequences producing significant alignments: (Bits) Value Ahg481427 jgi|Araly1|481427|fgenesh2_kg.4__487__AT2G25740.1 2992 0.0 > Ahg481427 jgi|Araly1|481427|fgenesh2_kg.4__487__AT2G25740.1 Length=1970 Score = 2992 bits (1620), Expect = 0.0 Identities = 1872/1990 (94%), Gaps = 32/1990 (2%) Strand=Plus/Plus Query 1 GAGGTGGCGAAAGGGGACTCTCTCTACTGGCGGGTAAACG--AAACTC--GAG-AG-AAA 54 |||||||||||||| |||||| |||| ||||||||||||| |||||| ||| || ||| Sbjct 1 GAGGTGGCGAAAGGAGACTCTATCTATTGGCGGGTAAACGAAAAACTCGAGAGAAGAAAA 60 Query 55 TGGACGACGAGAGGATTCGAGAGCGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG 114 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 61 TGGACGACGAGAGGATTCGTGAGAGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG 120 Query 115 ATTTCGAGGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATGATA 174 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATTTCGAAGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATG--- 177 Query 175 ATAATGATGATCTCTCTTCATTTCCTTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTCG 234 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 178 ATAATGATCATCTCTCTTCATTTCCCTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTTG 237 Query 235 GTGATGATGAACTTATGTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGCGAGG 294 ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 238 GTGATGATGAATTTATTTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGTGAGG 297 Query 295 TTGAAGACACTCAAAACAGAGTTTCTTTTGTGGATGGAGGAACGGTATTGAAGATCCCGC 354 |||| ||||||||||||||| || |||||||||||||||| || || ||||| ||||||| Sbjct 298 TTGAGGACACTCAAAACAGAATTGCTTTTGTGGATGGAGGCACAGTTTTGAAAATCCCGC 357 Query 355 TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTCCCCCTTAGAATCATTC 414 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 358 TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTACCCCTTAGAATCGTTC 417 Query 415 AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCTTCTACGA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 418 AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCATCTACCA 477 Query 475 TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTTAAGTATGCCAGTGTGGGGACAA 534 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 478 TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTCAAGTATGCCAGTGTGGGGACAA 537 Query 535 CCGCAGAGATACGACAATACCGTCGACTTGGTGATGGTTCATTCAATGTTATTACTCGTG 594 |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 538 CCGCCGAGATAAGACAATACCGTCGACTTGGTGATGGTTCATTCAACATTATTACTCGTG 597 Query 595 GACAACAACGTTTCCGTTTAAAGCATCGCTGGACTGACGTTGAAGGATTTACTTGCGGAG 654 |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 598 GACAACAACGGTTCCGTTTAAAGCGTCGCTGGACTGACGTTGAAGGATTTCCTTGCGGAG 657 Query 655 AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGAAAAC 714 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 658 AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGGAAAC 717 Query 715 TGGTACCGCTAAGCAAGTTGCGAGGTCGCTATCCCTTGGGTACAGCATCTTTATCTACAC 774 |||||||| ||||||||||||||| |||||| |||| | |||||| ||||||||||||| Sbjct 718 TGGTACCGTTAAGCAAGTTGCGAGATCGCTACCCCTCGAGTACAGTGTCTTTATCTACAC 777 Query 775 CTCTTAGAGATATGGACGCACAGTCTGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC 834 ||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 778 CTCTTAGAGAT-T----------T-GGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC 825 Query 835 TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 826 TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA 885 Query 895 CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAGTCCAATCTAGTGGGTCTAATC 954 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 886 CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAATCCAATCTAGTGGGTCTAATC 945 Query 955 CATACAGCTTGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACAACGAAAATGAAGACG 1014 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 946 CATACAGCTCGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACGACGAAAATGAAGAGG 1005 Query 1015 AGCAATCGGCAATTGGCAAGACTCCTGTTTCACAAGAGAAATATCAGAAGCAAAATAGGC 1074 |||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||| Sbjct 1006 AGCAATCGACAATTGGCAAGACTCCTATCTCACAAAAGAAATATCAGAAGCAAAATAGGC 1065 Query 1075 TGGCAAGTTTCCGGCAAAATACTGATCTAAGCCGATTCCGTATGACGCCAAGAGCATTTT 1134 |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 1066 TGGCAAGTTTCCGGGAAAGTACTGATCTAAGCCGATTCCGTATGACCCCAAGAGCATTTT 1125 Query 1135 GGCCATTCTGGGCGTATAGGATGTTTGACTCATATTATCTTGCTCAAAGAGCAG-TCGAT 1193 |||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| Sbjct 1126 GGCCATTCTGGGCGTATAGGATGTACGACTCATATTATCTTGCTCAAAGAGCAGCT-GAT 1184 Query 1194 CTGTGGAAGCAAATAGTTGGGGTTCCAAACATGGAGGCTTTTGTGAATAAACCAGATATT 1253 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| Sbjct 1185 CTGTGGAAGCAAATAGTTGCGGTTCCAAACATGGAGGCTTTTGTGAATACACCAAATATT 1244 Query 1254 CTATCCTTTTCCATTGCGAGTAAAATTCCCGTGTCTGAGTCAATTAGACAAGAGCTCTTG 1313 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1245 CTATCCTTTTCCATTGCTAGTAAAATTCCTGTGTCTGAGTCAATTAGACAAGAGCTCTTG 1304 Query 1314 GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAT 1373 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1305 GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAC 1364 Query 1374 CGTGTTCGATGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG 1433 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 CGTGTTCGTTGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG 1424 Query 1434 TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTCCACGAGATAATG 1493 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1425 TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTGCACGAGATAATG 1484 Query 1494 ACCTTTTACAAAGCAAATGACATAGCGCTTAGAGGTAGACCTGTTAAAAAGGACAGCTGG 1553 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1485 ACCTTTTACAAAGCAAATGACATAGCGATTAGAGGTAGACCTGTTAAAAAGGACAGCTGG 1544 Query 1554 TTTCCTGGGTATGCTTGGACAATTGCAAACTGTGCGACGTGCGAAACCCAGCTTGGTTGG 1613 |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1545 TTTCCTGGGTATGCATGGACAATTGCAAACTGTGCGACGTGTGAAACCCAACTTGGTTGG 1604 Query 1614 CATTTCACAGCGACAAACAAGAAGTTGAAGCCATCGTCTTTTTGGGCAGTTCGTGGCTCA 1673 | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 1605 CTTTTCACAGCGACAAATAAGAAGTTGAAGCCATCATCTTTCTGGGCAGTTCGGGGCTCA 1664 Query 1674 CAGGTTGCAGATGACATGCGCTGAAACAGCA-TTAAAACCAGGTCTCACTCACGGATCAA 1732 ||||| ||||||||||||||||||||||||| ||||| |||||||||||| | ||||||| Sbjct 1665 CAGGTCGCAGATGACATGCGCTGAAACAGCAATTAAA-CCAGGTCTCACTTATGGATCAA 1723 Query 1733 TTCGC-CTTTCAATACCAAATTACCATAGAAAGGTTTCTAGCTTAAACTTCCCCACTATG 1791 ||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 1724 TTCGCGCTT-CAATACCAAATTACCATAGAAAGGTTTCTACCTTTAACTTCCCCACTATG 1782 Query 1792 CTGAATATTGCAAAATAGCTTGTGAAAGC-ACAAAGCTGACTAGAGTATAGAATTCTAAA 1850 ||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 1783 CTGAATATTACTAAATAGCTTGTGAAAGCGA-AAAGCTGACTAGAGTATAGAATTCTAAA 1841 Query 1851 GTAATATGCATACATACAATATATATATCCAGCATA-ATGTGATGGAGGAACCATAGTTA 1909 |||||||||||||||||| ||||||||| ||||||| |||||||||| | ||| ||| || Sbjct 1842 GTAATATGCATACATACATTATATATATACAGCATAGATGTGATGGAAGTACCCTAGGTA 1901 Query 1910 GGATTAA-ACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTTAAC 1968 ||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1902 GGAA-AACACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTGAAC 1960 Query 1969 TCTCAGTCTC 1978 ||||| |||| Sbjct 1961 TCTCACTCTC 1970 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75571046080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5