BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25740.1

Length=2010
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481427 jgi|Araly1|481427|fgenesh2_kg.4__487__AT2G25740.1         2992    0.0  


> Ahg481427 jgi|Araly1|481427|fgenesh2_kg.4__487__AT2G25740.1
Length=1970

 Score = 2992 bits (1620),  Expect = 0.0
 Identities = 1872/1990 (94%), Gaps = 32/1990 (2%)
 Strand=Plus/Plus

Query  1     GAGGTGGCGAAAGGGGACTCTCTCTACTGGCGGGTAAACG--AAACTC--GAG-AG-AAA  54
             |||||||||||||| |||||| |||| |||||||||||||  ||||||  ||| || |||
Sbjct  1     GAGGTGGCGAAAGGAGACTCTATCTATTGGCGGGTAAACGAAAAACTCGAGAGAAGAAAA  60

Query  55    TGGACGACGAGAGGATTCGAGAGCGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG  114
             ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  61    TGGACGACGAGAGGATTCGTGAGAGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG  120

Query  115   ATTTCGAGGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATGATA  174
             ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  121   ATTTCGAAGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATG---  177

Query  175   ATAATGATGATCTCTCTTCATTTCCTTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTCG  234
             |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  178   ATAATGATCATCTCTCTTCATTTCCCTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTTG  237

Query  235   GTGATGATGAACTTATGTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGCGAGG  294
             ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  238   GTGATGATGAATTTATTTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGTGAGG  297

Query  295   TTGAAGACACTCAAAACAGAGTTTCTTTTGTGGATGGAGGAACGGTATTGAAGATCCCGC  354
             |||| ||||||||||||||| || |||||||||||||||| || || ||||| |||||||
Sbjct  298   TTGAGGACACTCAAAACAGAATTGCTTTTGTGGATGGAGGCACAGTTTTGAAAATCCCGC  357

Query  355   TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTCCCCCTTAGAATCATTC  414
             ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct  358   TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTACCCCTTAGAATCGTTC  417

Query  415   AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCTTCTACGA  474
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  418   AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCATCTACCA  477

Query  475   TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTTAAGTATGCCAGTGTGGGGACAA  534
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  478   TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTCAAGTATGCCAGTGTGGGGACAA  537

Query  535   CCGCAGAGATACGACAATACCGTCGACTTGGTGATGGTTCATTCAATGTTATTACTCGTG  594
             |||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct  538   CCGCCGAGATAAGACAATACCGTCGACTTGGTGATGGTTCATTCAACATTATTACTCGTG  597

Query  595   GACAACAACGTTTCCGTTTAAAGCATCGCTGGACTGACGTTGAAGGATTTACTTGCGGAG  654
             |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  598   GACAACAACGGTTCCGTTTAAAGCGTCGCTGGACTGACGTTGAAGGATTTCCTTGCGGAG  657

Query  655   AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGAAAAC  714
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  658   AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGGAAAC  717

Query  715   TGGTACCGCTAAGCAAGTTGCGAGGTCGCTATCCCTTGGGTACAGCATCTTTATCTACAC  774
             |||||||| ||||||||||||||| |||||| |||| | ||||||  |||||||||||||
Sbjct  718   TGGTACCGTTAAGCAAGTTGCGAGATCGCTACCCCTCGAGTACAGTGTCTTTATCTACAC  777

Query  775   CTCTTAGAGATATGGACGCACAGTCTGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC  834
             ||||||||||| |          |  ||||||||||||||||||||||||||||||||||
Sbjct  778   CTCTTAGAGAT-T----------T-GGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC  825

Query  835   TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA  894
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  826   TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA  885

Query  895   CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAGTCCAATCTAGTGGGTCTAATC  954
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  886   CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAATCCAATCTAGTGGGTCTAATC  945

Query  955   CATACAGCTTGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACAACGAAAATGAAGACG  1014
             ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  946   CATACAGCTCGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACGACGAAAATGAAGAGG  1005

Query  1015  AGCAATCGGCAATTGGCAAGACTCCTGTTTCACAAGAGAAATATCAGAAGCAAAATAGGC  1074
             |||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct  1006  AGCAATCGACAATTGGCAAGACTCCTATCTCACAAAAGAAATATCAGAAGCAAAATAGGC  1065

Query  1075  TGGCAAGTTTCCGGCAAAATACTGATCTAAGCCGATTCCGTATGACGCCAAGAGCATTTT  1134
             |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct  1066  TGGCAAGTTTCCGGGAAAGTACTGATCTAAGCCGATTCCGTATGACCCCAAGAGCATTTT  1125

Query  1135  GGCCATTCTGGGCGTATAGGATGTTTGACTCATATTATCTTGCTCAAAGAGCAG-TCGAT  1193
             ||||||||||||||||||||||||  |||||||||||||||||||||||||||| | |||
Sbjct  1126  GGCCATTCTGGGCGTATAGGATGTACGACTCATATTATCTTGCTCAAAGAGCAGCT-GAT  1184

Query  1194  CTGTGGAAGCAAATAGTTGGGGTTCCAAACATGGAGGCTTTTGTGAATAAACCAGATATT  1253
             ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct  1185  CTGTGGAAGCAAATAGTTGCGGTTCCAAACATGGAGGCTTTTGTGAATACACCAAATATT  1244

Query  1254  CTATCCTTTTCCATTGCGAGTAAAATTCCCGTGTCTGAGTCAATTAGACAAGAGCTCTTG  1313
             ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1245  CTATCCTTTTCCATTGCTAGTAAAATTCCTGTGTCTGAGTCAATTAGACAAGAGCTCTTG  1304

Query  1314  GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAT  1373
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1305  GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAC  1364

Query  1374  CGTGTTCGATGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG  1433
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1365  CGTGTTCGTTGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG  1424

Query  1434  TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTCCACGAGATAATG  1493
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1425  TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTGCACGAGATAATG  1484

Query  1494  ACCTTTTACAAAGCAAATGACATAGCGCTTAGAGGTAGACCTGTTAAAAAGGACAGCTGG  1553
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1485  ACCTTTTACAAAGCAAATGACATAGCGATTAGAGGTAGACCTGTTAAAAAGGACAGCTGG  1544

Query  1554  TTTCCTGGGTATGCTTGGACAATTGCAAACTGTGCGACGTGCGAAACCCAGCTTGGTTGG  1613
             |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  1545  TTTCCTGGGTATGCATGGACAATTGCAAACTGTGCGACGTGTGAAACCCAACTTGGTTGG  1604

Query  1614  CATTTCACAGCGACAAACAAGAAGTTGAAGCCATCGTCTTTTTGGGCAGTTCGTGGCTCA  1673
             | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct  1605  CTTTTCACAGCGACAAATAAGAAGTTGAAGCCATCATCTTTCTGGGCAGTTCGGGGCTCA  1664

Query  1674  CAGGTTGCAGATGACATGCGCTGAAACAGCA-TTAAAACCAGGTCTCACTCACGGATCAA  1732
             ||||| ||||||||||||||||||||||||| ||||| |||||||||||| | |||||||
Sbjct  1665  CAGGTCGCAGATGACATGCGCTGAAACAGCAATTAAA-CCAGGTCTCACTTATGGATCAA  1723

Query  1733  TTCGC-CTTTCAATACCAAATTACCATAGAAAGGTTTCTAGCTTAAACTTCCCCACTATG  1791
             ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct  1724  TTCGCGCTT-CAATACCAAATTACCATAGAAAGGTTTCTACCTTTAACTTCCCCACTATG  1782

Query  1792  CTGAATATTGCAAAATAGCTTGTGAAAGC-ACAAAGCTGACTAGAGTATAGAATTCTAAA  1850
             ||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  1783  CTGAATATTACTAAATAGCTTGTGAAAGCGA-AAAGCTGACTAGAGTATAGAATTCTAAA  1841

Query  1851  GTAATATGCATACATACAATATATATATCCAGCATA-ATGTGATGGAGGAACCATAGTTA  1909
             |||||||||||||||||| ||||||||| ||||||| |||||||||| | ||| ||| ||
Sbjct  1842  GTAATATGCATACATACATTATATATATACAGCATAGATGTGATGGAAGTACCCTAGGTA  1901

Query  1910  GGATTAA-ACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTTAAC  1968
             |||  || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1902  GGAA-AACACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTGAAC  1960

Query  1969  TCTCAGTCTC  1978
             ||||| ||||
Sbjct  1961  TCTCACTCTC  1970



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 75571046080


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5