BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25830.1 Length=1405 Score E Sequences producing significant alignments: (Bits) Value Ahg320374 jgi|Araly1|320374|fgenesh1_pm.C_scaffold_4000431 1552 0.0 > Ahg320374 jgi|Araly1|320374|fgenesh1_pm.C_scaffold_4000431 Length=984 Score = 1552 bits (840), Expect = 0.0 Identities = 946/996 (95%), Gaps = 12/996 (1%) Strand=Plus/Plus Query 35 ATGGCCTCCCATTGCTCCATGAGAGTAATCCTCCTCAGATTCTCCAATGGCGTCTCTTCC 94 ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1 ATGGCCTCCCATTGCTCTATGAGAGCAATCCTCCACAGATTCTCCAATGGCGTCTCTTCC 60 Query 95 AGATCCATTCTCAACTCCACTAACCATCGTCTTCTTAGTCTTACCATGACCAACACTCTC 154 ||||||||||||||||||||||| |||||||||| || |||||||||||| ||||| Sbjct 61 AGATCCATTCTCAACTCCACTAAACATCGTCTTC----TC--ACCATGACCAACTCTCTC 114 Query 155 TCGTCTCTTTCCTCAATCTCTCCCCACACTACTACTTCGCATTTCACGGCTGCGTCACAA 214 || |||||||||||||||||| || ||| ||||||||||||||||| | ||||||||| Sbjct 115 TCTTCTCTTTCCTCAATCTCT--CCTCAC-ACTACTTCGCATTTCAC-G--GCGTCACAA 168 Query 215 CAATCAGATGACCAGAACTGCTTCCGCAAGCTTCAACTCAGAAAGATTTCGATTTCAACT 274 | ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| Sbjct 169 CTATCAGATGACCAGAATTGCTTCCGAAAGCTTCAAGTCAGAAAGATTTCGATTTCAACT 228 Query 275 CCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGTCGAAAGGGCGCTCAAGATTCA 334 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 229 CCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGCCGAAAGGGGGCTCAAGATTCG 288 Query 335 AAGAAGGCGAAGCTATACTGTAGAATTGGCAAGGAGGTTGTATCTGCTGTCAAGAAAGGG 394 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 289 AAGAAGGCGAAGCTATACTGTAGAATTGGGAAGGAGGTTGTATCTGCTGTCAAAAAAGGG 348 Query 395 GGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTG 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTG 408 Query 455 GATGTACCGAAAGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAA 514 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 GATGTACCCAAGGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAA 468 Query 515 GCTTTTATAGAGAAGATTTACGAGGTATATGGCTACGGTGGTGTTAGTATGGTAGTCGAG 574 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 469 GCTTTTATAGAGAAGATTTACGAGGTATATGGCTATGGTGGGGTTAGTATGGTAGTCGAG 528 Query 575 GTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTAT 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 GTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTAT 588 Query 635 GGGGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAAAAGAGTTAGGGTAGTG 694 || |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 589 GGAGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAGACGAGTTAGGGTAGTG 648 Query 695 AATATAAAGGTCACCGAAGCTGACAAAGATCAGCTCCTTATTATTGCTTTAGATGCTGGA 754 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 649 AATATAAAGGTCACTGAAGCTGACAAAGATCAGCTCCTTAATATTGCTTTAGATGCTGGA 708 Query 755 GCAGAGGATGTTATTGAACCCCCAACTTATGAAGATGATACTGATGAAGACAGGGAAGAG 814 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 709 GCAGAGGATGTTATTGAGCCCCCAACTTATGAAGATGATACTGATGAAGATAGGGAAGAA 768 Query 815 AGGTACTACAAAATTGTAACTTCTAATGAGAACTACTCAACAATATTATCAAAGCTACGT 874 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 769 AGGTACTACAAAATTGTAACTTCTTCTGAGAACTACTCAACGATATTATCAAAGCTACGG 828 Query 875 GATGAAGGAGTGAACTTCGAGCCTGACAATGGCTCTGAACTGCTCCCTCTGACTACAGTT 934 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 829 GATGAAGGTGTGAATTTCGAGCCTGACAACGGCTCTGAACTGCTCCCTCTTACTACAGTT 888 Query 935 GAGGTGGATGATGAGGCCATGGAATTGAACAAAGAGCTAATGCAGAAACTACTAGAACTT 994 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 889 GAGGTGGATGATGAGGCCATGGAACTGAACAAAGAGCTAATGCAGAAACTACTAGAACTT 948 Query 995 GATGATGTTGATGCTGTTTATATCGACCAAAAATGA 1030 ||||| |||||||||||||||||||||||||||||| Sbjct 949 GATGACGTTGATGCTGTTTATATCGACCAAAAATGA 984 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52526447855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5