BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26060.1 Length=1386 Score E Sequences producing significant alignments: (Bits) Value Ahg932816 jgi|Araly1|932816|scaffold_400804.1 1797 0.0 Ahg888801 jgi|Araly1|888801|Al_scaffold_0007_787 863 0.0 > Ahg932816 jgi|Araly1|932816|scaffold_400804.1 Length=1104 Score = 1797 bits (973), Expect = 0.0 Identities = 1051/1090 (96%), Gaps = 0/1090 (0%) Strand=Plus/Plus Query 94 TCATAGATGGATTTGATGGAGAAGAACTTGGAGTTAGTGGAGATTCAGAAACTAGAAGGC 153 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 15 TCATAGATGGATTTGATGGAGAAGAACTTGGAGTTAGTGGAGATTCAGAAACTTGAAGGC 74 Query 154 CACACCGATCGTGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTT 213 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 75 CACACCGATCGGGTTTGGAGCGTAGCTTGGAACCCTGTCTCTTCTCACGCCGACGGTGTT 134 Query 214 TCACCGATTCTTGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCT 273 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 135 TCACCGATTCTTGCTTCTTGCAGTGGCGATAGCACCGTTCGAATCTGGGAACAAAGCTCT 194 Query 274 CTCTCTCGCTCCTGGACTTGCAAGACAGTTTTGGAAGAGACGCATACAAGAACTGTGAGG 333 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 195 CTCTCTCGCTCCTGGACTTGCAAGACAGTTTTGGATGAAACGCATACAAGAACTGTGAGG 254 Query 334 TCGTGCGCTTGGTCACCCTCAGGACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACT 393 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 TCATGTGCTTGGTCACCCTCAGGACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACT 314 Query 394 GGCATTTGGAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGGGACATGAA 453 |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||| Sbjct 315 GGCATTTGGAAGAAATATGGTTCTGAGTTTGACTGTATTTCCACTTTAGAGGGACATGAA 374 Query 454 AACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCATGCCTTGCAACATGTAGTAGA 513 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 375 AACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCACACCTTGCAACATGTAGTAGA 434 Query 514 GATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAATATGACTGTGCTGCGGTA 573 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 435 GATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAGTATGATTGTGCTGCGGTG 494 Query 574 TTAACTGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTA 633 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 495 TTAACTGGGCATACACAAGATGTGAAGATGGTTCAATGGCATCCTACCATGGATGTTTTA 554 Query 634 TTTTCTTGCAGTTATGATAACACCATCAAGGTTTGGTGGTCTGAAGATGATGATGGTGAG 693 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 555 TTTTCTTGCAGTTATGATAACACCATAAAGGTTTGGTGGTCTGAAGATGATGATGGTGAG 614 Query 694 TATCAATGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCAACGGTATGGTCC 753 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 615 TATCAATGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCTACGGTGTGGTCC 674 Query 754 ATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACCTTGAAG 813 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 675 ATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACATTGAAG 734 Query 814 ATATGGGGGACAGATATTGCCAAGATGCAGTCTGGTGAAGAATATGCACCTTGGATTCAT 873 ||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 735 ATATGGGGGACGGATATTGCCAGGATGCAGTCTGGTGAAGATTATGCACCTTGGATTCAT 794 Query 874 CTTTGTACTCTCTCTGGCTATCATGACCGTACCATATACTCAGCTCACTGGTCAAGGGAC 933 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 795 CTTTGTACTCTCTCTGGTTATCATGACCGTACCATATACTCTGCTCACTGGTCAAGGGAT 854 Query 934 GACATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGACAGCAAACAT 993 |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 855 GACATTATTGTCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGAGAGCAAACAT 914 Query 994 GACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAAT 1053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 GACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAAT 974 Query 1054 GATGTAAACTCTGTCCAATGGTCACCCGGTGAGGGGAACCGGTTGCTTGCGTCGGCTAGT 1113 |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 975 GATGTAAATTCTGTCCAATGGTCACCCGGTGAGGGGAACCGGTTACTTGCCTCGGCTAGT 1034 Query 1114 GATGATGGGATGGTCAAGATTTGGCAGCTTGCAACTAAACCGTGACTGCTGTTGGTTTGG 1173 || ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 1035 GACGATGGGATGGTCAAGATTTGGCAGCTTGCAACTAAACAGTGACTGGTGTTGGTTTGG 1094 Query 1174 ATAGGTTCTG 1183 |||||||||| Sbjct 1095 ATAGGTTCTG 1104 > Ahg888801 jgi|Araly1|888801|Al_scaffold_0007_787 Length=1041 Score = 863 bits (467), Expect = 0.0 Identities = 865/1053 (82%), Gaps = 44/1053 (4%) Strand=Plus/Plus Query 106 TTGATGGAGAAGAACTT-GGAGTTAGTGGAGATTCAGAAACTAGAAGGCCACACCGATCG 164 |||||||| ||||| || || |||||| ||| |||||||||| ||||| ||||||||||| Sbjct 7 TTGATGGATAAGAATTTAGG-GTTAGTAGAGGTTCAGAAACTTGAAGGTCACACCGATCG 65 Query 165 TGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTTTCACCGATTCT 224 |||||||| ||| || ||||| |||| | ||||||| | | | | |||| Sbjct 66 TGTTTGGAACGTCGCCTGGAATCCCG--------C-CGCCGAC-G-G--T----G-TTCT 107 Query 225 TGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCTCTCT-CTCGCT 283 ||| || ||||||| |||||| || || ||||||||||| || ||||| || | |||| | Sbjct 108 TGCCTCCTGCAGTGCCGATAAGACCGTACGAATCTGGGAGCAGAGCTCGCT-TACTCGTT 166 Query 284 CCTGGACTTGCAAGACAGTTTTGGAAGAG-ACGCATACAAGAACTGTGAGGTCGTGCGCT 342 ||||||| |||||| |||||||||||| | ||||| || |||||||| | ||||| ||| Sbjct 167 CCTGGACCTGCAAGGCAGTTTTGGAAG-GCACGCACACTAGAACTGTCAAGTCGTTAGCT 225 Query 343 TGGTCACCCTCAG-GACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACTGGCATTTG 401 |||||||| || | || |||||||||||||||||||||| ||||| || ||| || |||| Sbjct 226 TGGTCACCGTCTGCGA-AGTTATTGGCCACTGCAAGTTTCGATGGCACTACTTGCGTTTG 284 Query 402 GAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGGGACATGAAAACGAAGT 461 | | |||| | | |||| | |||| | | ||| ||| ||| |||||||| |||||| Sbjct 285 GGATAATTTTGCTACTGACTCCGAGTCTGTCTCCGTTTTACAGGTACATGAAAGCGAAGT 344 Query 462 CAAAAGTGTATCATGGAATGCATCTGGTTC-ATGCCTTGCAACATGTAGTAGAGATAAGT 520 |||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||| Sbjct 345 CAAAAGTGTATCATGGAATGCATCTGGTTCGTTG-CTTGCAACATGTGGTAGAGACAAGT 403 Query 521 CTGTTTGGATTTGGGAAGTGCTTGA-AGG-GAATGAATATGACTGTGCTGCGGTATTAAC 578 |||| |||||||||||||| | | | || |||||||| ||| |||||||| || ||||| Sbjct 404 CTGTCTGGATTTGGGAAGTAC-T-ACCGGAGAATGAATTTGATTGTGCTGCAGTGTTAAC 461 Query 579 TGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTATTTTC 638 ||| ||| || ||||||| |||||||| | ||||||||| || ||||||||||| || || Sbjct 462 TGGTCATTCAGAAGATGTTAAGATGGTCCTGTGGCATCCTACTATGGATGTTTTGTTCTC 521 Query 639 TTGCAGTTATGATAACACCATCAAGGTTTGGTGGTCTGAAGATGATGATGGTGAGTATCA 698 ||| |||||||||||||| ||||| ||||||||||||| ||||| |||||||| ||| | Sbjct 522 TTGAAGTTATGATAACACTGTCAAGATTTGGTGGTCTGAGGATGAAGATGGTGATTAT-A 580 Query 699 A-TGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCAACGGTATGGTCCATCT 757 | ||||||||||||||||||||||||||||| ||||| ||||| || || ||| |||| Sbjct 581 ATTGTGTCCAAACCTTAGGTGAATCTAACAATGGTCATTCTTCCACCGTCTGGAGTATCT 640 Query 758 CATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACCTTGAAGATAT 817 | ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 641 CCTTTAATGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACAGTGAAAATAT 700 Query 818 GGGGGACAGATATTGCCAAG-ATGCAGTCTGGTGAAGAATATGCACCTTGGATTCATCTT 876 || |||||||||| | ||| ||||| |||||||||| ||||| ||| |||| ||| || Sbjct 701 GGAAGACAGATATTTC-AAGGATGCAATCTGGTGAAGGATATGTACCCTGGACCCATGTT 759 Query 877 TGTACTCTCTCTGGCTAT-CATGACCGTACCATATACTCAGCTCACTGGTCAAGGGACGA 935 ||||| ||||||| || | || || ||||||||||| |||| ||| ||||||||||||| Sbjct 760 TGTACACTCTCTG-CTTTTCACGATCGTACCATATATTCAGTTCATTGGTCAAGGGACGG 818 Query 936 CATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGACAGCAAACA-TG 994 ||||||| || |||||||||||| || |||||| ||| |||||||||||||| || || Sbjct 819 TGTTATTGCTAGCGGAGCAGGCGATGATACTATACAGTTATTTGTGGACAGCAA-CAGTG 877 Query 995 ACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAA-GAATAAAGCACATGAAAAT 1053 ||||||||||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 878 ACTCTGTTGATAGACCTTCATACAAACTCTTGCTTAAGAAAGAG-AAAGCACATGAAAAG 936 Query 1054 GATGTAAACTCTGTCCAATGGTCACCCGGTGAGGGGAA-CCGGTTGCTTGCGTCGGCTAG 1112 |||||||| || || |||||| |||| | | ||| || |||||||||||| ||||| || Sbjct 937 GATGTAAATTCAGTGCAATGGGCACCTGATAAGGA-AAGCCGGTTGCTTGCCTCGGCCAG 995 Query 1113 TGATGATGGGATGGTCAAGATTTGGCAGCTTGC 1145 || || ||||| ||||||||| ||||||| Sbjct 996 CGACGACAAAATGGTTAAGATTTGGAAGCTTGC 1028 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51802733200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5