BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26170.1 Length=1701 Score E Sequences producing significant alignments: (Bits) Value Ahg481472 jgi|Araly1|481472|fgenesh2_kg.4__532__AT2G26170.1 2564 0.0 > Ahg481472 jgi|Araly1|481472|fgenesh2_kg.4__532__AT2G26170.1 Length=1685 Score = 2564 bits (1388), Expect = 0.0 Identities = 1591/1690 (94%), Gaps = 10/1690 (1%) Strand=Plus/Plus Query 1 ACACATTAAACTAAAGAAGAGAGAACTTTAGAGGTTAGAGAGATGAAGACGCAACATCAA 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ACACATTAAATTAAAGAAGAGAGAACTTTAGAGGTTAGAGAGATGAAGACGCAACATCTA 60 Query 61 TGGTGGGAAGTTCTTGATCCATTCTTGACACAACACGAAGCTCTTATTGCATTCTTGACT 120 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 TGGTGGGAAGTTCTTGATCCATTCTTGACACAACACGAAGCTCTTGTTGCATTCTTGACT 120 Query 121 TTTGCAGCGGTTGTAATTGTGATTTACTTGTACCGACCCTCCTGGTCCGTATGCAATGTT 180 ||||||| |||||| |||||| |||||||||||||||| |||||||||||| |||||||| Sbjct 121 TTTGCAGTGGTTGTGATTGTGGTTTACTTGTACCGACCATCCTGGTCCGTACGCAATGTT 180 Query 181 CCCGGTCCAACCGCTATGCCTCTAGTTGGTCACTTGCCCTTGATGGCTAAGTATGGTCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 CCCGGTCCAACCGCTATGCCTCTAGTTGGTCACTTGCCCTTGATGGCTAAGTACGGTCCT 240 Query 241 GATGTCTTCTCCGTTCTTGCTAAGCAATATGGCCCTATTTTCAGATTTCAGATGGGGAGG 300 ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| Sbjct 241 GATGTCTTCTCCGTTCTTGCTAAACGATATGGCCCAATTTTCAGATTTCAGATGGGGAGG 300 Query 301 CAACCACTGATAATAATAGCAGAAGCAGAGCTTTGCAGAGAAGTTGGGATAAAGAAGTTC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAACCACTGATAATAATAGCAGAAGCAGAGCTTTGCAGAGAAGTTGGGATAAAGAAGTTC 360 Query 361 AAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAA 420 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 361 AAAGATCTTCCAAACAGAAGCATTCCCTCTCCAATCTCAGCCTCTCCTCTTCACAAGAAA 420 Query 421 GGCCTCTTCTTCACCAGGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTC 480 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCCTCTTCTTCACTAGGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTC 480 Query 481 TATCAGCCTTCACATTTAACAAGTCTTATCCCTACAATGCATAGTTTCATCACTTCTGCT 540 || |||||||||||||| || |||||||||||||||||||| | |||||||||||||||| Sbjct 481 TACCAGCCTTCACATTTGACCAGTCTTATCCCTACAATGCACAATTTCATCACTTCTGCT 540 Query 541 ACTCATAATCTTGATTCTAAACCGCGAGATATCGTTTTCTCCAACCTCTTCCTCAAACTT 600 |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 541 ACTCATGATCTTGATTCGAAACCGCGAGATATCGTTTTCTCCAACCTCTTCCTTAAACTA 600 Query 601 ACCACTGATATCATCGGACAAGCGGCTTTTGGAGTCGACTTCGGTCTTTCCGGGAAGAAA 660 ||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| Sbjct 601 ACCACGGATATCATCGGACAAGCTGCTTTTGGAGTCAACTTTGGTCTTTCCGGGAAGAAA 660 Query 661 CCAATCAAAGATGTGGAGGTGACTGATTTCATAAACCAGCATGTCTACTCTACAACACAA 720 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCTGTCAAAGATGTAGAGGTGACTGATTTCATAAACCAGCATGTCTACTCTACAACACAG 720 Query 721 CTCAAGATGGATTTATCAGGATCACTCTCTATCATCTTAGGCTTACTGATTCCGATTCTT 780 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 721 CTCAAGATGGATTTATCTGGATCACTCTCCATCATCTTAGGCTTACTGATTCCGATTCTT 780 Query 781 CAAGAGCCGTTTAGGCAGGTGTTGAAGAGGATACCGGGAACAATGGACTGGAGAGTCGAG 840 |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 781 CAAGAGCCGTTTAGACAGGTTTTGAAGAGGATACCGGGAACAAAGGACTGGAGAGTCGAG 840 Query 841 AAGACTAATGCAAGACTGAGTGGACAACTTAATGAGATTGTGTCAAAGCGAGCCAAGGAG 900 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AAGACTAACGGAAGACTGAGTGGACAACTTAATGAGATTGTGTCAAAGCGAGCCAAGGAA 900 Query 901 GCTGAGACTGACTCAAAAGACTTCTTGTCATTGATTTTGAAAGCTCGAGAGTCCGATCCT 960 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 901 GCTGAGACTGACTCAAAAGACTTCTTGTCATTGATTTTGAAAGCTAGAGAGTTCGATCCT 960 Query 961 TTCGCCAAAAACATCTTCACATCGGATTATATTAGTGCTGTGACTTATGAGCATCTTCTT 1020 |||||||| | || || || |||||||||| |||||||||||||| |||||||||||| Sbjct 961 TTCGCCAAGGAGATATTTACGCCGGATTATATCAGTGCTGTGACTTACGAGCATCTTCTT 1020 Query 1021 GCTGGCTCTGCAACCACTGCTTTCACACTATCCTCTGTTCTTTACTTAGTCTCTGGTCAT 1080 |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1021 GCTGGCTCTGCAACTACTGCTTTCACATTATCCTCTGTTCTCTACTTAGTCTCTGGTCAT 1080 Query 1081 CTTGATGTTGAGAAACGTCTGCTTCAAGAAATTGACGGGTTTGGGAA-CCGTGATCTGAT 1139 ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||| |||| Sbjct 1081 CTTGAAGTTGAGAAACGTCTGCTTCAAGAGATTGACGGGTTTGG-AAGCCGTGATTTGAT 1139 Query 1140 CCCGACTGCTCATGACTTACAACACAAGTTTCCATACCTCGATCAGGTCATTAAAGAGGC 1199 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1140 CCCGACTGCTCATGACTTACAATACAAGTTTCCATACCTCGATCAGGTCATCAAAGAGGC 1199 Query 1200 TATGAGATTCTACATGGTTTCTCCTTTGGTTGCAAGGGAAACTGCTAAAGAAGTGGAGAT 1259 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 1200 TATGAGATTCTACATGGTTTCCCCTTTGGTTGCAAGGGAAACTGCAAAAGAAGTTGAGAT 1259 Query 1260 AGGAGGTTATTTACTCCCAAAGGGGACATGGGTTTGGTTAGCACTAGGAGTTCTAGCAAA 1319 ||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1260 AGGAGGTTACCTACTCCCTAAGGGTACATGGGTTTGGTTGGCACTAGGAGTTCTAGCAAA 1319 Query 1320 GGACCCTAAAAACTTTCCAGAACCGGAGAAGTTCAAGCCGGAAAGATTTGATCCGAACGG 1379 |||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 1320 GGACCCGAAAAACTTTCCAGACCCAGAGAAGTTCAGGCCGGAAAGATTTGATCCGAACGG 1379 Query 1380 AGAAGAGGAGAAACA-TAGACATCCATACGCTTTCATCCCATTCGGTATCGGTCCACGAG 1438 ||||||||| ||| | ||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1380 AGAAGAGGAAAAA-AGTAGGCATCCATACGCTTTCATACCATTCGGTATCGGTCCACGAG 1438 Query 1439 CCTGTGTTGGACAGAGATTTGCCCTGCAAGAGATCAAACTCACATTACTGCATCTCTACC 1498 |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1439 CCTGTGTTGGACAGAGATTTGCCCTGCAGGAGATCAAACTCACCTTACTGCATCTCTACA 1498 Query 1499 GTAATTACATTTTCAGACATTCCCTAGAAATGGAGATACCACTGCAGCTTGATTATGGTA 1558 |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1499 GTAATTACATTTTCAGACATTCCCCAGAAATGGAGAAACCACTGCAGCTTGATTATGGTG 1558 Query 1559 TAATTCTCAGCTTCAAGAACGGGGTTAAGCTCAGAACCATCAAAAGATTCTGATTCTTGA 1618 |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 1559 TAATTCTCAGCTTCAAGAACGGTGTAAAGCTCAGAGCCATCAAAAGATTCTGATTCTTGA 1618 Query 1619 AACAAGTGAA-ATAAAAGCAAGACTGAAATTT--ATATTTAAATTCAAAACTCCAATGTA 1675 ||||||||| ||| | || ||| | |||| |||||||||||||||||||||||||| Sbjct 1619 AACAAGTGATGATATAT--AA-ACTTAGATTTTTATATTTAAATTCAAAACTCCAATGTA 1675 Query 1676 GTTCCAAAGG 1685 |||||||||| Sbjct 1676 GTTCCAAAGG 1685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63801160375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5