BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26210.1 Length=1017 Score E Sequences producing significant alignments: (Bits) Value Ahg932873 jgi|Araly1|932873|scaffold_400861.1 922 0.0 > Ahg932873 jgi|Araly1|932873|scaffold_400861.1 Length=611 Score = 922 bits (499), Expect = 0.0 Identities = 567/599 (95%), Gaps = 7/599 (1%) Strand=Plus/Plus Query 164 TTTGCATGCTGTTTTCCAATAAAGTTAATTCTCTAA-CAGAACAAGTTTCGAGATTGGAT 222 |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 16 TTTGAATGCTGTTTTCCAATAAAGTTAATTCTCTAATC-GAACAAGTTTCGAGATTGGAT 74 Query 223 ATTGACGACAACGATATGGGACTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATG 282 ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 75 ATTGACGAC-A--ATATGGGCCTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATG 131 Query 283 CCTCTGTGTATCTGTGTAGCTCCTCCCAAATCAACTGATAAACCAAACCCACCTGCTACC 342 |||||||| ||||||||||||||| ||||||| || ||||||||||||||||| |||||| Sbjct 132 CCTCTGTGCATCTGTGTAGCTCCTTCCAAATCTACGGATAAACCAAACCCACCGGCTACC 191 Query 343 ATTGCTCCTGTGGTTCTTCCTCAGTTGAAGTCAGAGGCTTCAGCAAAAAGTAAAGGTTCC 402 |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| Sbjct 192 GTTGCTCCTGTGGTTCTCCCTCAGTTAAAGTCAGAGACTTCAGCAAAAAGTAAAGGTTCC 251 Query 403 ACTTCCAGCAGCAATGCTAGATCAGCTCTAAATGCTGGACTAGACACCCCCCAAAGAGAC 462 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 252 ACTTCCAGCAGCAATGCTAGATCAGCTCTTAATCCTGGACTAGACACCCCCCAAAGAGAC 311 Query 463 TATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACAGTGCTGGTGCG 522 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 312 TATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACATTGCTGGTGTG 371 Query 523 AAAAAGCTTCTAAAAGAGGGCGTAGATGCAAATTACCGAGACAGGCAAGGAATGTCGGTG 582 ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||| Sbjct 372 AAAAAGCTTTTAAAAGAGGGCGTAGATGCAAATTACCGAGACAAGCAGGGAATGTCAGTG 431 Query 583 CTTCATCTGGCTGTCCTGTTCAACCAAACTGATATTGCGTTGATGTTGATGGATCATGGA 642 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 432 CTTCATCTGGCTGTCCTTTTCAACCAAACTGATATTGCATTGATGTTGATGGATCATGGA 491 Query 643 GCAAGCCTTGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGC-CCCGGCAAC 701 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 492 GCAAGCCTCGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGCACCCG-CAAC 550 Query 702 ACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAACAGCATGCCTCAGACAGAG 760 ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| Sbjct 551 ACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAACAGCAGGCATCATACAGAG 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37817933664 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5