BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26250.1
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900167 jgi|Araly1|900167|Al_scaffold_0004_817 2687 0.0
> Ahg900167 jgi|Araly1|900167|Al_scaffold_0004_817
Length=1653
Score = 2687 bits (1455), Expect = 0.0
Identities = 1588/1654 (96%), Gaps = 2/1654 (0%)
Strand=Plus/Plus
Query 84 ATGGGTAGATCCAACGAGCAAGATCTGCTCTCTACCGAGATCGTTAATCGTGGGATCGAA 143
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1 ATGGGTAGATCCAACGAGCAAGATCTACTCTCTACCGAGATCGTCAACCGTGGGATCGAA 60
Query 144 CCATCCGGTCCTAACGCCGGCTCACCAACGTTCTCGGTTAGGGTCAGGAGACGTTTGCCT 203
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 61 CCATCCGGTCCTAACGCCGGTTCACCAACGTTCTCGGTCAGGGTCCGGAGACGTTTGCCG 120
Query 204 GATTTTCTTCAGTCGGTGAACTTGAAGTACGTGAAACTTGGTTACCACTACCTCATAAAC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTTTCTTCAGTCGGTGAACTTGAAGTACGTGAAACTTGGTTACCACTACCTCATAAAC 180
Query 264 CATGCGGTTTATTTGGCGACCATACCGGTTCTTGTGCTGGTTTTTAGTGCTGAGGTTGGG 323
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CATGCGGTTTATTTGGCGACCATACCAGTTCTTGTGCTGGTTTTTAGTGCTGAGGTTGGA 240
Query 324 AGTTTAAGCAGAGAAGAGATTTGGAAGAAGCTTTGGGACTATGATCTTGCAACTGTTATC 383
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 241 AGTTTAAGCAGAGAAGAGATTTGGAAGAAGCTTTGGGACTACGATCTTGCAACTGTCATC 300
Query 384 GGATTCTTCGGTGTCTTTGTTTTAACCGCTTGTGTCTACTTCATGTCTCGTCCTCGCTCT 443
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GGATTCTTCGGTGTCTTTGTCTTAACCGCTTGTGTCTACTTCATGTCTCGTCCTCGTTCT 360
Query 444 GTTTATCTTATTGATTTCGCTTGTTACAAGCCCTCCGATGAACACAAGGTGACAAAAGAA 503
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GTTTATCTTATTGATTTCTCTTGTTACAAGCCCTCCGATGAACTCAAGGTGACAAAAGAA 420
Query 504 GAGTTCATAGAACTAGCGAGAAAATCAGGGAAGTTCGACGAAGAGACACTCGGTTTCAAG 563
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GAGTTCATAGAATTAGCGAGAAAATCAGGAAAGTTCGACGAAGAGACACTCGGTTTCAAG 480
Query 564 AAGAGGATCTTACAAGCCTCAGGCATAGGCGACGAGACATACGTCCCAAGATCCATCTCT 623
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGAGGATCTTACAAGCTTCAGGCATAGGCGACGAGACATACGTCCCAAGATCCATCTCT 540
Query 624 TCATCAGAAAACATAACAACGATGAAAGAAGGTCGTGAAGAAGCCTCTACAGTGATCTTT 683
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 TCATCGGAAAACATAACAACGATGAAAGAAGGTCGTGAAGAAGCCTCAACAGTGATCTTT 600
Query 684 GGAGCACTAGACGAACTCTTCGAGAAGACACGTGTAAAACCTAAAGACGTTGGTGTCCTT 743
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GGAGCACTAGACGAGCTCTTCGAGAAGACACGTGTCAAACCTAAAGACGTTGGTGTCCTT 660
Query 744 GTGGTTAACTGTAGCAT-TTTCAACCCGACACCGTCGTTGTCCGCAATGGTGATAAACCA 802
||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 661 GTGGTTAACTGTAGCATCTTT-AACCCGACACCGTCGTTGTCCGCAATGGTGATTAACCA 719
Query 803 TTACAAGATGAGAGGGAACATACTTAGTTACAACCTTGGAGGGATGGGATGTTCGGCTGG 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TTACAAGATGAGAGGGAACATACTTAGTTACAACCTTGGAGGGATGGGATGTTCTGCTGG 779
Query 863 AATCATAGCTATTGATCTTGCTCGTGACATGCTTCAGTCTAACCCTAATAGTTATGCTGT 922
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 AATCATAGCTGTTGATCTTGCTCGTGACATGCTTCAGTCTAACCCTAATAGTTACGCTGT 839
Query 923 TGTTGTGAGTACTGAGATGGTTGGGTATAATTGGTACGTGGGAAGTGACAAGTCAATGGT 982
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 840 TGTTGTGAGTACTGAGATGGTTGGGTATAATTGGTACGTGGGACGTGACAAGTCAATGGT 899
Query 983 TATACCTAATTGTTTCTTTAGGATGGGTTGTTCTGCCGTTATGCTCTCTAACCGTCGTCG 1042
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 900 TATACCTAATTGCTTCTTTAGAATGGGTTGTTCTGCCGTTATGCTCTCTAACCGCCGTCG 959
Query 1043 TGACTTTCGCCATGCTAAGTACCGTCTCGAGCACATTGTCCGAACTCATAAGGCTGCTGA 1102
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 960 TGACTTTCGCCATGCTAAGTACCGTCTCGAGCACATTGTCCGGACTCATAAGGCTGCCGA 1019
Query 1103 CGACCGTAGCTTCAGGAGTGTGTACCAGGAAGAAGATGAACAAGGATTCAAGGGGTTGAA 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CGACCGTAGCTTCAGGAGTGTGTACCAGGAAGAAGATGAACAAGGATTCAAGGGGTTGAA 1079
Query 1163 GATAAGTAGAGACTTAATGGAAGTTGGAGGTGAAGCTCTCAAGACAAACATCACTACCTT 1222
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1080 AATAAGTAGAGACTTAATGGAAGTTGGAGGTGAAGCTCTTAAGACCAACATCACTACCTT 1139
Query 1223 AGGTCCTCTTGTCCTACCTTTCTCCGAGCAGCTTCTCTTCTTTGCTGCTTTGCTCCGCCG 1282
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 AGGCCCTCTTGTTCTCCCTTTCTCCGAACAGCTTCTCTTCTTTGCTGCTTTGCTCCGCCG 1199
Query 1283 AACATTCTCACCTGCTGCCAAAACGTCCACAACCACTTCCTTCTCTACTTCCGCCACCGC 1342
||| ||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||| ||
Sbjct 1200 AACTTTCTCACCTGCGGCCAAAACCTCCACAACCACCTCCTTCTCTTCTTCGGCCACAGC 1259
Query 1343 AAAAACCAATGGAATCAAGTCTTCCTCTTCCGATCTGTCCAAGCCATACATCCCGGACTA 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 TAAAACCAATGGAATCAAGTCTTCCTCTTCCGATCTGTCCAAGCCATACATCCCCGACTA 1319
Query 1403 CAAGCTCGCCTTCGAGCATTTTTGCTTCCACGCGGCAAGCAAAGTAGTGCTTGAAGAGCT 1462
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1320 CAAGCTCGCCTTCGAGCACTTCTGCTTCCACGCGGCAAGCAAAGTAGTGCTTGAGGAGCT 1379
Query 1463 TCAAAAGAATCTAGGCTTGAGTGAAGAGAATATGGAGGCTTCTAGGATGACACTTCACAG 1522
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1380 TCAGAAGAATCTAGGCTTGAGTGAAGAGAACATGGAGGCTTCAAGGATGACACTTCACAG 1439
Query 1523 GTTTGGAAACACTTCTAGCAGTGGAATCTGGTATGAGTTGGCTTACATGGAGGCCAAGGA 1582
||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||
Sbjct 1440 GTTTGGAAACACTTCTAGCAGTGGAATCTGGTACGAGCTGGCTTACTTGGAAGCCAAGGA 1499
Query 1583 AAGTGTTCGTAGAGGCGATAGGGTTTGGCAGATCGCTTTCGGTTCTGGTTTTAAGTGTAA 1642
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1500 AAGTGTTCGTAGAGGCGATAGGGTTTGGCAGATCGCGTTCGGGTCAGGTTTTAAGTGTAA 1559
Query 1643 CAGTGTGGTGTGGAAGGCAATGAGGAAGGTGAAGAAGCCAACCAGGAACAATCCTTGGGT 1702
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1560 CAGTGTGGTGTGGAAGGCAATGAAGAAGGTGAAGAAGCCAACTAGGAACAATCCTTGGGT 1619
Query 1703 GGATTGCATCAACCGTTACCCTGTGCCTCTCTAA 1736
|||||| |||||||||||||||||||||||||||
Sbjct 1620 GGATTGTATCAACCGTTACCCTGTGCCTCTCTAA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79646702295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5