BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26280.1 Length=2312 Score E Sequences producing significant alignments: (Bits) Value Ahg481487 jgi|Araly1|481487|fgenesh2_kg.4__547__AT2G26280.1 3321 0.0 > Ahg481487 jgi|Araly1|481487|fgenesh2_kg.4__547__AT2G26280.1 Length=2261 Score = 3321 bits (1798), Expect = 0.0 Identities = 2119/2264 (94%), Gaps = 62/2264 (3%) Strand=Plus/Plus Query 62 AAGAAGACGACGCTTACCCCAAAACTCGAATCCCTA---G--G-AGGTTTTGGTAATATG 115 |||||||||||||||| ||||||||||||||||||| | | ||| |||||||||||| Sbjct 34 AAGAAGACGACGCTTAGCCCAAAACTCGAATCCCTAGGTGAAGCAGGGTTTGGTAATATG 93 Query 116 AATTGAGAAGTCCACGCACGTGTGTATCTCTATTACCGTCAGA--TTT--TGGTTTAAAA 171 ||||||| ||||||||||||||||||||||||||||||||||| ||| | |||| | Sbjct 94 AATTGAG-AGTCCACGCACGTGTGTATCTCTATTACCGTCAGAGGTTTCAT-TTTTATTA 151 Query 172 GCAGTTATTTT-TACTAGTCTTGTAAG-AATGAGTTTAACAAAGAAAGCAAGTGAACCAA 229 | || |||| | | | | || | || |||||| ||||| |||||||||||||| |||| Sbjct 152 G-TCTTCTTTTGTCCCA-T-TT-T-AGCAATGAGCTTAACCAAGAAAGCAAGTGATCCAA 206 Query 230 AGCTAAGTGGTACTAGTATCAAGCCAACAACTTTAAACCCTCATGCTGCTGAGTTTGTTC 289 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 207 AGCTAAGTGGTACTAGTATCAAGCCAACAACTTTGAACCCTCATGCTGCTGAGTTTGTTC 266 Query 290 CGTTTACTCTACGTTCTCCTTCATCTGGAGGTACAAGTACTTTGGAT--------A-CAA 340 ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| Sbjct 267 CGTTTACTCTACGTTCTCCTTCATCTGGAGGTACAAGCACTTTGGATGCGGCGACATCAA 326 Query 341 GACTTTTAGCTTCTTCTAGTTCTGTTGGGAAAGCGGTTTTGGACAGGACAGAATCATCTG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 GACTTTTAGCTTCTTCTAGTTCTGTTGGGAAAGCGGTTTTGGACAGGACAGAATCATCTG 386 Query 401 CGTCACATCATTCAGATGAAGAAGCACGTCAGTTCTGGAGTCATCAACTTCCTGATGATA 460 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CATCACATCATTCGGATGAAGAAGCACGTCAGTTCTGGAGTCATCAACTTCCTGATGATA 446 Query 461 TAACTCCAGATTTTGGGTTGATGACTCAAGATGACAATTCTTATGGATCTGGTAGTTTGT 520 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 447 TAACTCCAGATTTTGGGTTAATGACTCAAGATGACAATTCTTATGGATCTGGGAGTTTGT 506 Query 521 CACTAGCTAACTTGTCGTTGTTTGACGGTAATGAAGCTGAGAAGTTTCCTTCTGCTAGTG 580 || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 507 CATTAGCTAGCTTGTCGTTGTTTGACGGTAATGAAGCTGAAAAGTTTCCTTCTGCTAGTG 566 Query 581 GAGGATAT-GGCTTTTCAGATCAAACTGGATTAGCTTCACATAATGCTAATGGTAATAGC 639 |||| | | || ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 567 GAGGGT-TCGGATTTTCTGACCAAACTGGATTAGCTTCACATAATGCTAATGGTAATAGC 625 Query 640 TTGGCTGATAAGAGTAGATATCCCATTTCTTCATTTGGGGAAGATCCTCAGCGACAGAGT 699 |||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 626 TTGGGAGAGAAGAGTAGATATCCCATTTCTTCATTCGGGGAAGATCCTCAGCGACCGAGT 685 Query 700 TTCATGCAACTGAGTCCAAAGCCTTGGGATAAGCAAATCATGAATGCTGAGCAGCTTCTT 759 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 686 TTCATGCATTTGAGTCCAAAGCCTTGGGATAAGCAAATCATGAATGCTGAGCAGCTGCTT 745 Query 760 GGGAATGACAGGGAAAGAAACCCTTTTAGTGGGAAATCTCGACATGGCTTTGTTAACGAC 819 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 746 GGGAATGACAGGGAAAGAAACCCTTTCAGTGGGAAATCTCGACATGGGTTTGTTAACGAA 805 Query 820 ATGATTACTGAGAGTCCAGGGGATATGGAGGTGAACCCTGTGGATTTTCTCGCTTCTCAG 879 ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 806 ATGATTACTGAGAGTGCAGGGGAAATGGAGGTGAACCCTGTGGATTTTCTTGCTTCTCAG 865 Query 880 TTCCCCGGATTCGCCGCTGAGAGTCTAGCAGAAGTTTATTTTGCTAATGGGTGTGATTTG 939 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 866 TTCCCTGGATTCGCCGCTGAAAGTCTAGCAGAGGTTTATTTTGCTAATGGGTGTGATTTG 925 Query 940 CAGTTGACAATTGAGATGCTTACTCAGCTTGAGCTACAAGTGGATGGTGGCTTGAATCAA 999 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 926 CAGTTGACAGTTGAGATGCTTACTCAGCTTGAGCTACAAGTGGATGGTGGCTTGAATCAG 985 Query 1000 AACATAAGCCCTAAGACTTATGCTCCTCCTAGTCTAACTCCAATGGATTTTCCTGCACTA 1059 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| Sbjct 986 AACATAAGCCCTAAGAGTTATGCTCCTCCTAGTCTAACTCCCATGGATTTTCCTGCCCTA 1045 Query 1060 AGCATCTCAAATAGCCATGGTATTCCTGCCCAGTTTGGTGGGGATGATTTGCAACAAACT 1119 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1046 AGCATCTCAAATAGCCATGGTATTCCTGCTCAGTTTGGTGGGGATGATTTGCAACAAACT 1105 Query 1120 GGAAATCATTACCAATCTCCTGAAAAGGATAACATGTTCTTCTTCAAGTCGGGACCATCG 1179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 GGAAATCATTACCAATCTCCTGAAAAGGATAACATGTTCTTCTTCAAGTCGGGACCATCA 1165 Query 1180 GTTTCTCAGCCTGGTGCAATCGATTATGTTTCTGCTGTCAGGAAGTTAGCATCTCAGGAT 1239 ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1166 GTTACTCAGCCCGGTTCAATCGATTATGTTTCTGCTGTCAGGAAGTTAGCATCTCCGGAT 1225 Query 1240 TCTGGTATGTGGAAATATGAACGAAATGATTCAGCAGACTCATCTATTGGCTCTAGCAGG 1299 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1226 TCTGGTATGTGGAAATATGAACGAAACGATTCAGCAGACTCATCTATTGGCTCTAGCAGG 1285 Query 1300 AATTCTGGTGCTTACAAAAGTGGCCGTGGGAGGAGTATATATTCTGATAAGCTGCAAAGT 1359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 AATTCTGGTGCTTACAAAAGTGGCCGTGGGAGGAGTATATATTCTGATAAGCTGCAAAGT 1345 Query 1360 CGAGCCCAAACTCGACCTGCTCCTGTTTGGGTGGAGACCGGGGATGCTGTTGGCAATATG 1419 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1346 CGAGCCCAAACTCGACCTGCTCCTGTCTGGGTGGAGACCGGGGATGCTGTTGGCAATATG 1405 Query 1420 TATTCTGAGTTACGCGAGGAAGCACGTGACTATGCACGTTTGCGGAATGTGTACTTTGAA 1479 |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1406 TATTCTGACTTACGCGAGGAAGCACGTAACTATGCACGTTTGCGGAATGTGTACTTTGAA 1465 Query 1480 CAGGCACGACAAGCATACCTTGTTGGGAATAAGGCCTTAGCCAAAGAGCTAAGTGTTAAG 1539 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 1466 CAGGCACGGCAAGCATACCTTGTTGGCAATAAGGCCTTAGCTAAAGAGCTAAGTGTCAAG 1525 Query 1540 GGACAGTTGCATAATATGCAAATGAAGGCTGCTCATGGGAAAGCTCAAGAAGCCATTTAC 1599 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1526 GGACAGTTGCATAACATGCAAATGAAAGCTGCTCATGGGAAAGCTCAAGAAGCCATTTAC 1585 Query 1600 CGCCAGAGGAACCCAGTGGGTCAAGGAAACAGTAGAGGGAATGAGAGAATGATAGACTTG 1659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1586 CGCCAGAGGAACCCAGTGGGTCAAGGAAACAGTAGAGGGAATGAGAGAATGATAGACTTG 1645 Query 1660 CATGGGTTACATGTGAGTGAAGCACTTCAGGTGTTGAAGCACGAACTGAGTGTGTTGAGG 1719 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1646 CATGGGTTACATGTGAGTGAAGCTCTTCAGGTGTTGAAGCACGAACTGAGCGTGTTGAGG 1705 Query 1720 AGCACAGCTCGAGCAACGCAAGAGAGGCTTCAGATTTACATATGTGTAGGGACAGGCCAC 1779 ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| Sbjct 1706 AGCACAGCTCGAGCAACGCAAGAAAGGCTTCAGGTTTTCATATGTGTAGGGACAGGCCAC 1765 Query 1780 CACACAAGGGGTTCCCGCACTCCGGCTAGACTCCCAGTTGCTGTACAGCGCTACCTACTC 1839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1766 CACACAAGGGGTTCCCGCACTCCGGCTAGACTCCCAGTTGCTGTACAGCGCTACCTACTC 1825 Query 1840 GAAGAAGAAGGTCTTGACTATTCCGAACCACAGGCCGGTCTCCTTAGAGTCATCATATAC 1899 ||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1826 GAAGAAGAAGGCCTTGACTATTCCGAGCCGCAGGCTGGTCTCCTTAGAGTCATCATATAC 1885 Query 1900 TGACAGACAAAAGCCAGGTACTTATATAGGATACA-AGACCGGaaaagaaaacaaaaaaa 1958 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1886 TGACAGACAAAAGCCAGGTACTTATATAGGATACACA-ACCGGAAAAGAAAACAAAAAAA 1944 Query 1959 aGGA--AA-GGTGACCACGCTATTCATTTGTTGTATCTGATCTGTACATGGGAAGAGAGG 2015 | || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1945 AAGACTAAAGGTGACCACGCTATTCATTTGTTGTATCTGATCTGTACATGGGA------- 1997 Query 2016 AGAAAGAGACTAGCTGAAAATGAAGAAGGaaaaaaaaaaGTGTTAGGAAAGAGATCCGCA 2075 ||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 1998 ---------CTAGCTGAAAATGAAGAAGGAAAAATAA--GTGTTAGGAAAGAGATCTGCA 2046 Query 2076 AGAAGGAAGGAACGAAGGCGTATGCATAAAATGTTTAGGTTTGTTCAGTTAATACTTTTT 2135 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2047 AGAAGGAAGGAATGAAGGCGTATGTATAAAATGTTTAGGTTTGTTCAGTTAATACTTTTT 2106 Query 2136 GTAGCATCAGAGGATCGATCAGACCTCTTTCTATCTTTTTGTCGGGATCTATACGATGTT 2195 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 2107 GTAGCATCAGAGGATCGATC---C-TCTTTCTATCTTTTTGTCGGGATCTATACGATGTT 2162 Query 2196 TTGTTGATTCTCGGTGCttttttttttttACAGTTTTACTCTATATGTTATACTCCTTTC 2255 |||||||||||| || |||||||| |||||||||||||||||| |||||||||||| Sbjct 2163 TTGTTGATTCTCTGTACTTTTTTT-----ACAGTTTTACTCTATATGCTATACTCCTTTC 2217 Query 2256 TTCTGGAAATGCTTATATTTGTAATTCTCTTAGATTTAATGTGC 2299 |||||||||| || |||||||||||||||||||||||||||||| Sbjct 2218 TTCTGGAAATTCTCATATTTGTAATTCTCTTAGATTTAATGTGC 2261 Score = 62.1 bits (33), Expect = 2e-08 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1 GCTCGTGTTACCTCTTTAGCCAAACAACACCCC 33 ||||||||||||||||||||||||||||||||| Sbjct 1 GCTCGTGTTACCTCTTTAGCCAAACAACACCCC 33 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87074300070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5