BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26340.2
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320426 jgi|Araly1|320426|fgenesh1_pm.C_scaffold_4000483 979 0.0
> Ahg320426 jgi|Araly1|320426|fgenesh1_pm.C_scaffold_4000483
Length=684
Score = 979 bits (530), Expect = 0.0
Identities = 642/691 (93%), Gaps = 28/691 (4%)
Strand=Plus/Plus
Query 78 TCACTCCACGCTACCGTGAGCCTCCCACTGTTCTCCA-ACT-CAAACCACAAAAAGCTAA 135
||||| |||||||||||||||||||||| ||||||| | | |||||| |||||||||||
Sbjct 7 TCACTTCACGCTACCGTGAGCCTCCCAC--TTCTCCACAATCCAAACCGCAAAAAGCTAA 64
Query 136 CGTGCGCAGCTACATTATCACCTCCGCCATGGAAACAGAGCCGGCGAGTTAtctccgtct 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CGTGCGCAGCTACATTATCACCTCCGCCATGGAAACAGAGCCGGCGAGTTATCTCCGTCT 124
Query 196 ccttttttctctcccgtctcctcctcctccctAACGATGCTATGGCTGGTGGCTTAATGG 255
|||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 125 CCTTCTTCCTCTCCCGCCTCCTCCTCCTCCCTAACGATGCTATGGCTGGTAGCTTAATGG 184
Query 256 ATAAATTGGATAAATACGTCAAGAGGAAGAAACTTGATCCACTTGAAGCATATGTACCAC 315
|| || || || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 185 AT-AA----AT--AT--GTCAAGAGGAAAAAACTTGATCCACTTGAAGCATATGTACCAC 235
Query 316 CAGTGATTCTAGCTCAGTTACAAATCCAGGATCTTGAGGGATTTTTGAATGTGGAGAAAC 375
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 236 CAGTGATTCTAGCTCAGTTACAAATCCAGGATCTTGAGGAATTTTTGAATGTGGAGAAGC 295
Query 376 CTGAATTTGAGGCGTGTAGACGCCAATTGCGGTCTGGTCCTGCTAGCTCTCTT-CGTGTA 434
||||||| |||||||||||||| ||||||||||||||||||||||| ||| || ||||||
Sbjct 296 CTGAATTCGAGGCGTGTAGACGTCAATTGCGGTCTGGTCCTGCTAGTTCT-TTGCGTGTA 354
Query 435 AACATTCGA------GCT---TATGCTTCAGATGATGGT-TTCTCCAAAACCGCCACTGA 484
||||||||| ||| |||||||||||||||||| || |||||||| || |||||
Sbjct 355 AACATTCGAGCTGTTGCTCAGTATGCTTCAGATGATGGTGTT-TCCAAAACTGCGACTGA 413
Query 485 TGATGTTGATCGATGTTTAAGAGCATTGGAAGAACTGGATTCGTTGTTTCTACGTGCGTC 544
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGATGTTGATCGTTGTTTAAGAGCATTGGAAGAACTGGATTCGTTGTTTCTACGTGCGTC 473
Query 545 GAGGAAAGATTCAAATGCAACTGTTGTA-TTGATGAAGTCACAGCTTGGAACAGCGTTAA 603
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 474 GAGGAAAGATTCAAATGCAACTGTTG-AGTTGATGAAGTCACAGCTTGGAACAGCGTTAA 532
Query 604 CCGCACTGGACAGTCTTCTACAAACAGTTCCTTCTCAAGTGCTTGATAAAGGGAAAGCTA 663
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 533 CCGCACTGGACAGTCTTCTACAAACGGTTCCTTCTCAAGTCCTTGATAAAGGGAAAGCTA 592
Query 664 TGGTGGAAGTCTACAGATCAGCATCTGAAGAAGATGCGGGAAGTGATGATTTAGAATCCT 723
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 593 TGGTGGAAGTCTACAGATCAGCATCTGAACAAGAAGCGGGAAGTGATGATTTAGAATCCT 652
Query 724 CTGAGATAAAGCAGCTCCAGTCCATACTGTG 754
||||||||||||||||||| |||||||||||
Sbjct 653 CTGAGATAAAGCAGCTCCAATCCATACTGTG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5