BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26440.1 Length=1754 Score E Sequences producing significant alignments: (Bits) Value Ahg481501 jgi|Araly1|481501|fgenesh2_kg.4__561__AT2G26440.1 2300 0.0 > Ahg481501 jgi|Araly1|481501|fgenesh2_kg.4__561__AT2G26440.1 Length=1640 Score = 2300 bits (1245), Expect = 0.0 Identities = 1468/1577 (93%), Gaps = 10/1577 (1%) Strand=Plus/Plus Query 108 TTCTCTAAACCCTCATGAAACTTCTGCT-ACAAGTTTCTGCAAAAACACACCATATCCAG 166 ||||||||| ||| || |||| ||| || ||||||||||||| ||||||||||||||| Sbjct 69 TTCTCTAAAACCTAATCAAACCTCT-CTAACAAGTTTCTGCATGAACACACCATATCCAA 127 Query 167 ATGCATGTTT-TACCTCCTTAAAACTATCCATCTCCATCAACATAAGCCCCAACATTCTC 225 |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 128 ATGCATGTTTCGA-CTCCTTAAAACTTTCCATCTCCATCAACATAAGCCCCAACATTCTC 186 Query 226 TCTTTCCTCCTCCAAACCCTCCAAACAGCTCTTTCCGAGGCTGGGAAACTCACCGATCTC 285 ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 187 TCTTTCCTCCTTCAAACCCTCCAAACAGCTCTTTCCGAGGCCGGAAAACTCACCGATCTT 246 Query 286 CTTTCTGGCGCTGGGGTCTCCAACAACCTAGTTGAGGGACAACGTGGCTCTCTTCAAGAC 345 ||||| || ||||| ||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 247 CTTTCCGGAGCTGGAATCTCCAACAACCTCGTTGAGGGGCAACGTGGCTCTCTTCAAGAC 306 Query 346 TGCAAAGATCTTCACCACATCACTTCTTCTTTCTTGAAACGATCAATCTCCAAGATCCAA 405 ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 307 TGCAAAGATCTTCACCAGATCACTTCTTCCTTCTTAAAACGATCCATCTCCAAGATCCAA 366 Query 406 GACGGTGTTAACGATTCACGGAAA-CTAGCCGACGCTAGAGCGTACCTAAGCGCCGCTCT 464 ||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct 367 GACGGTGTTAACGATTCAC-GAAAGCTAGCTGACGCTAGAGCGTACCTGAGCGCCGCTCT 425 Query 465 CACCAACAAGATCACATGCTTGGAAGGTCTTGAAT-CAGCCTCAGGTCCACTCAAGCCAA 523 ||||||||||||||| |||||||||||||||| || ||||||| ||||| || ||||||| Sbjct 426 CACCAACAAGATCACTTGCTTGGAAGGTCTTG-ATACAGCCTCTGGTCCTCTAAAGCCAA 484 Query 524 AGCTCGTGACCTCCTTCAC-GACCACTTACAAACACATAAGCAACTCCCTCTCTGCTCTT 582 ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| Sbjct 485 AGCTCGTGACCTCCTTCACGGA-AACTTACAAACACGTAAGCAACTCCCTCTCTGCTCTA 543 Query 583 CCAAAACAGAGAAGAACCACAAATCCAAAAACCGGCGGAAACACTAAGAACCGCCGGTTA 642 ||||||||| ||||| ||||||||| ||||||| ||| || |||||||||||||||||| Sbjct 544 CCAAAACAGGGAAGAGCCACAAATCTGAAAACCGACGGCAAGACTAAGAACCGCCGGTTA 603 Query 643 CTTGGGTTATTTCCTGACTGGGTCTATAAGAAAGATCACCGGTTTTTAGAAGATTCTAGC 702 |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 604 TTTGGGTTATTACCTGACTGGGTCTCTAAGAAAGATCACCGGTTTTTAGAGGATTCTAGT 663 Query 703 GACGGGTATGATGAGTATGACCCGAGTGAGAGCCTCGTGGTCGCTGCCGATGGAACAGGG 762 ||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||| Sbjct 664 GACGGGTATGATGAGTACGACCCGAGTGAGATCATCGTGGTTGCTGCCGATGGAACAGGG 723 Query 763 AATTTTTCGACTATTAACGAGGCCATAAGCTTTGCTCCTAATATGAGTAACGACAGGGTG 822 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 724 AATTTTTCGACCATTAACGAGGCCATAAGCTTTGCTCCGGATATGAGTAACGACAGGGTA 783 Query 823 CTGATATATGTAAAGGAAGGTGTGTATGACGAGAACATTGATATTCCGATCTACAAGACT 882 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 784 CTGATATATGTAAGGGAAGGTGTGTATGACGAGAACATTGAGATTCCGATCTACAAGACT 843 Query 883 AATATTGTTTTGATAGGAGATGGATCCGATGTTACATTTATTACCGGAAACCGAAGTGTC 942 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 AATATTGTTCTGATCGGAGATGGATCCGATGTTACATTTATTACCGGAAACCGAAGTGTA 903 Query 943 GGAGATGGATGGACCACTTTCCGATCTGCTACTCTTGCGGTTTCCGGCGAAGGATTCTTG 1002 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 904 GGAGATGGATGGACCACTTTCCGATCTGCTACTCTTGCGGTTTCGGGCGAAGGATTCTTG 963 Query 1003 GCGAGGGATATAATGATAACAAACACAGCAGGACCCGAGAAGCACCAAGCGGTTGCACTA 1062 |||||||| || |||||||| |||||||| |||||||||||||| ||||||||||| || Sbjct 964 GCGAGGGACATGATGATAACGAACACAGCGGGACCCGAGAAGCATCAAGCGGTTGCGTTA 1023 Query 1063 CGAGTGAACGCGGATTTTGTGGCCTTATACCGATGTGTCATTGATGGTTACCAGGACACA 1122 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1024 CGTGTGAACGCGGATTTTGTGGCCTTATATCGATGTGTCATTGATGGTTACCAGGACACA 1083 Query 1123 CTTTACACCCACTCATTCCGACAATTCTACCGTGAATGCGATATTTATGGAACCATTGAT 1182 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1084 CTTTACACCCACTCATTCCGACAATTCTACCGCGAATGCGATATTTATGGAACCATTGAT 1143 Query 1183 TATATCTTTGGAAACGCAGCCGTTGTCTTCCAAGGCTGTAACATCGTTTCAAAGTTGCCT 1242 ||||||||||| ||||| ||||| |||||||| || || ||||||||||||||||||||| Sbjct 1144 TATATCTTTGGGAACGCGGCCGTGGTCTTCCAGGGATGCAACATCGTTTCAAAGTTGCCT 1203 Query 1243 ATGCCAGGACAATTCACGGTAATTACTGCTCAGTCACGAGACACTCAGGACGAAGATACC 1302 ||||||||||||||||| ||| | |||||||| ||||| |||| || |||||||| ||| Sbjct 1204 ATGCCAGGACAATTCACTGTAGTAACTGCTCAATCACGGGACAGTCCCGACGAAGACACC 1263 Query 1303 GGGATCTCGATGCAAAACTGCTCCATCCTTGCGTCGGAGGATTTATTTAATAGCTCAAAT 1362 |||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||| Sbjct 1264 GGGATCTCGATGCAAAACTGCTCCATTCTTGCATCGGATGATTTATTTAACAGCTCAAAT 1323 Query 1363 AAAGTGAAGAGCTACTTGGGACGTCCGTGGAGAGAATTTTCAAGAACAGTTGTAATGGAA 1422 | ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 1324 AGAGTAAAGAGCTACTTGGGACGTCCGTGGAGAGGATTTTCAAGAACAGTTCTAATGGAA 1383 Query 1423 TCTTATATTGATGAGTTTATTGACGGTTCGGGTTGGAGCAAATGGAACGGTGGGGAAGCA 1482 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1384 TCTTATATTGATGAGTTTATTGACGGTTCGGGTTGGAGCAAATGGAACGGTAGGGAAGGA 1443 Query 1483 CTTGATACCCTTTACTATGGCGAGTATAACAATAACGGTCCGGGTTCTGAAACGGTTAAA 1542 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1444 CTTGATACCCTTTACTATGGCGAGTATAACAATAACGGGCCGGGTTCTGAAACGGGTAAA 1503 Query 1543 CGGGTTAACTGGCCGGGTTTTCACATTATGGGTTACGAAGATGCCTTTAACTTCACGGCA 1602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 CGGGTTAACTGGCCGGGTTTTCACATTATGGGTTACGAAGATGCCTTTAACTTCACGGCA 1563 Query 1603 ACAGAGTTTATCACTGGTGATGGTTGGTTGGGAAGTACTTCGTTCCCTTATGATAATGGA 1662 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1564 ACAGAGTTTATCACCGGTGATGGTTGGTTGGGTAGTACTTCGTTCCCTTATGATAATGGA 1623 Query 1663 ATTTAACAttttttttt 1679 |||||||| ||||||| Sbjct 1624 ATTTAACAACTTTTTTT 1640 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65819943360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5