BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26480.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481506 jgi|Araly1|481506|fgenesh2_kg.4__566__AT2G26480.1 2021 0.0
> Ahg481506 jgi|Araly1|481506|fgenesh2_kg.4__566__AT2G26480.1
Length=1427
Score = 2021 bits (1094), Expect = 0.0
Identities = 1324/1435 (92%), Gaps = 16/1435 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAGATTCGCCAGAGAAGAGTGTTGATGGTCCCAGCACCGTTCCAAGGCCATTTA 60
|||| ||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGATAATCGCCAGAGAAGAGTGTTGATGGTCCCAGCTCCGTTCCAAGGCCATTTA 60
Query 61 CCTTCGATGATGAATC-TAGCGTCCTACCTTTCTTCCCAAGGCTTTTCAATCACAATCGT 119
|||||||||||||| | |||| || | ||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCGATGATGAA-CTTAGCCTCATGTCTTTCTTCCCAAGGCTTTTCAATCACAATCGT 119
Query 120 TAGAAACGAATTCAATTTCAAAGATATCTCC-CATAATTTCCCTGGTATAAAATTCTTCA 178
| ||| | ||||||||||||||||||||||| | ||| |||||| | | || |||||||
Sbjct 120 TCGAACCAAATTCAATTTCAAAGATATCTCCGC-TAACTTCCCTAATTTCAAGTTCTTCA 178
Query 179 CCATCAAGGACGGCTTGTCAGAATCTGACGTGAAGTCTCT-GGGTCTCCTTGAATTTGTC 237
||||| | ||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 179 CCATCGACGACGGCTTGTCAGAATCCGACGTGAAGTCTCTCGGG-CTCCTTGAATTTGTC 237
Query 238 CTGGAGCTTAACTCTGTCTGTGAACCCCTATTGAAAGAGTTTCTAACCAACCATGATGAT 297
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 238 CTGGAGCTTAACTCTGTCTGTGAACCCCTATTGAAAGAGTTTCTAACCAATCATTATGAT 297
Query 298 GTTGTTGACTTTATCATTTATGATGAATTTGTTTACTTCCCTCGACGTGTTGCGGAAGAT 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 GTTGTTGACTTTATCATTTATGATGAATTCGTTTACTTCCCTCGACGTGTTGCGGAAGAT 357
Query 358 ATGAATCTGCCAAAGATGGTCTTTAGCCCTTCTTCCGCCGCTACCTCGATCAGCCGGTGT 417
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 358 CTGAATCTGCCAAAGATGGTCTTTAGCCCTTCTTCCGCGGCTACTTCGATCAGCCGGTGT 417
Query 418 GTGCTTATGGAGAACCAATCAAATGGGTTACTTCCTCCACAAGACGCAAGATCTCAACTA 477
|||||||| ||||||||| ||||||||||||||||||||||||| |||||| || ||||
Sbjct 418 GTGCTTATCGAGAACCAAGCAAATGGGTTACTTCCTCCACAAGAAGCAAGAGCTGAACTT 477
Query 478 GAAGAAACGGTGCCAGAGTTTCATCCCTTTC-GTTTCAAAGATCTGCCTTTTACAGCTTA 536
||||||| |||||||| ||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 478 GAAGAAATGGTGCCAGCCTTTCATCCCTTTCGGTTT-AAAGATCTGCCATTTACAGCTTA 536
Query 537 TGGATCTATGGAGAGATTAATGATACTTTACGAGAATGTAAGCAATAGAGCCT-CATCTT 595
|||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 537 TGGATCTATGGAGAGACTAGTGATACTTTACGAGAATGTAAGCAATAGA-TCTCCATCTT 595
Query 596 CTGGCATAATACACAACTCTTCGGATTGCTTAGAGAACTCATTCATAACAACTGCACAAG 655
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 596 CTGGCATAATACACAACTCTTCGAATTGCTTAGAGAACTCATTCATATTAACTGCACAAG 655
Query 656 AGAAA-T-GGGGAGTTCCGGTATACCCGGTTGGTCCACTCCATATGACCAATTCCGCAAT 713
| ||| | ||||| |||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 656 A-AAAGTGGGGGA-TTCCAGTATACCCGGTTGGTCCACTTCATATGACCAATTCGGCAAC 713
Query 714 GTCATGTCCAAGTTTATTTGAAGAAGAAAGAAACTGTCTTGAATGGCTTGAGAAGCAAGA 773
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTCATGCCCGAGTTTATTTGAAGAAGAAAGAAACTGTCTTGAATGGCTTGAGAAGCAAGA 773
Query 774 AACAAGCTCAGTGATCTACATAAGCATGGGGAGCTTGGCGATGACACAAGATATAGAGGC 833
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AACAAACTCGGTGATCTACATAAGCATGGGGAGCTTGGCGATGACACAAGATATAGAGGC 833
Query 834 TGTGGAGATGGCCATGGGATTTGTCCAGAGTAATCAACCCTTCTTGTGGGTGATCCGACC 893
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGTGGAAATGGCCATGGGATTTGTCCAGAGTAATCAACCCTTCTTGTGGGTGATCCGACC 893
Query 894 AGGCTCTATAAACGGACAAGAATCTTTAGACTTCTTACCGGAACAGTTCAACCAAACGGT 953
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 TGGCTCTATAACCGGACAAGAATCTTTAGACTTCTTACCGGAACAGTTCATGCAAACGGT 953
Query 954 GACCGATGGAAGAGGTTTTGTTGTGAAATGGGCCCCACAAAAAGAGGTATTAAGGCATAG 1013
|||||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||||||
Sbjct 954 AACCGATGGAAGAGGTTTTGTAGTGAAATGGGCACCACAGAAAGAGGTTTTAAAGCATAG 1013
Query 1014 AGCAGTGGGAGGGTTTTGGAACCATGGTGGATGGAACTCGTGCTTGGAGAGCATAAGCAG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGCAGTGGGAGGGTTTTGGAACCATGGTGGATGGAACTCGTGCTTGGAGAGCATAAGCAG 1073
Query 1074 TGGTGTACCAATGATTTGTAGGCCGTATTCTGGTGATCAGAGGGTGAATACTCGACTTAT 1133
||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1074 TGGCGTACCAATGATTTGCAGGCCGTATTCTGGTGATCAAAGGGTGAATACTCGGCTTAT 1133
Query 1134 GTCACATGTTTGGCAAACCGCGTATGAGATCGAAGGTGAATTGGAAAGAGGAGCTGTTGA 1193
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1134 GTCACATGTTTGGCAAACCGCGTTTGAGATCGAAGGTGAATTGGAAAGAGGAGCCGTTGA 1193
Query 1194 GATGGCCGTGAGGAGGCTCATTGTGGATCAAGAAGGTCAGGAGATGAGAATGAGAGCCAC 1253
|||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct 1194 GATGGCCGTGAGGAAGCTCATTGTGGATCAGGAAGGTGAGGAGATGAGAGTGAGAGCCAC 1253
Query 1254 CATATTGAAGGAAGAGGTTGAAGCCTCTGTCACAACCGAAGGCTCTTCTCACAATTCTTT 1313
|||||| ||||| |||||||| || ||||||||||| |||||||| ||||||| ||||||
Sbjct 1254 CATATTAAAGGAGGAGGTTGAGGCTTCTGTCACAACTGAAGGCTCGTCTCACAGTTCTTT 1313
Query 1314 AAACAATTTGGTCCATGCAATAATGATGCAAATTGACGAACAATGATAAGTGGTAAATTT 1373
|||| |||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 1314 AAACGATTTGGTCCAGGCAATAATGATGCAAATTGACCAACAATGATTAGTGGAAAATTT 1373
Query 1374 GGTGAGAACGAAATTACGTGTGTGGTGTTTTAATTTTTAAA-TAAAAATATGTGT 1427
|| | | ||||| | |||||| ||||||| | |||||| || || |||||||
Sbjct 1374 AATGTGTATGAAATCATGTGTGTAATGTTTTA-TATTTAAACTAGAATTATGTGT 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5