BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26500.2
Length=557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932927 jgi|Araly1|932927|scaffold_400915.1 876 0.0
> Ahg932927 jgi|Araly1|932927|scaffold_400915.1
Length=689
Score = 876 bits (474), Expect = 0.0
Identities = 512/530 (97%), Gaps = 4/530 (1%)
Strand=Plus/Plus
Query 1 CTTTCTTTGAGTCGCTTCACTTCTCTTGCATCCTTCAAACTCATCCACAG---G-AATGG 56
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 160 CTTTCTTTGAGTCGCTTCACTTCTCTTGCATCCTTCAAACTCATCCACAGCAAGAAATGG 219
Query 57 CGACAGCAGCAGCACCAGCAGTGATTTCATGGACAAGATCAGGCATTGTGTCCAAATCCG 116
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 220 CGACAGCAGCAGCACCAGCAGTGATCTCATGGACAAGATCAGGCATTGTGTCCAAATCCG 279
Query 117 GACAAACCCAGAAGAAATCTGAGATGAAAGTTTCTTACATAACTGGACTTAACTCATATG 176
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 280 GACAAACCCAGAAGAAAACTGAGATGAAAGTTTCTTACATAACTGGACTTAATTCATATG 339
Query 177 GTGGTCTCAAGGCACAGAACAACAAGGTTGTCTCAATGGGATCACCACTCTGCACAGAAC 236
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GTGGTCTTAAGGCACAGAACAACAAGGTTGTCTCAATGGGATCACCACTCTGCACAGAAC 399
Query 237 AGTGTTTTGCTAACGTTGTGATGTCTCTCAAAGGAAGAAGAGGTAATGGAGGAGCCTTAT 296
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 400 AGTGTTTTGCTAATGTTGTGATGTCTCTCAAAGGAAGAAGAGGCAATGGAGGAGCCTTAT 459
Query 297 CCACCACGTGTAACGCTGTCGGAGAGATTTTCAAGATTGCAGCAATCATGAACGCTCTTA 356
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 460 CCACCACGTGTAACGCTGTGGGGGAGATTTTCAAGATTGCAGCAATCATGAACGCTCTTA 519
Query 357 CTCTTGTTGGTGTTGCAGTTGGATTCGTTCTTCTTCGAATCGAAACTTCTGTTGAAGAAG 416
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 520 CTCTTGTTGGTGTTGCTGTTGGATTCGTTCTTCTTCGAATCGAGACTTCTGTTGAAGAAG 579
Query 417 CTGAAGCAGAGTAAATAGAGTAAATTGCTGCTCTTATAATTATATATTTTTGGTTATTGT 476
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 580 CTGAAGCAGAGTAAATAGAGTAAATTGCTGTTCTTATAATTATATATTTTTTGTTATTGT 639
Query 477 TGTTGTCAAGCTTTGGTAAAACTTGATGGATACATGTTACATTTGTTTAT 526
|||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 640 TGTTGTCAAGCTTTGGGAAAACTTGATGGATACATGTTATATTTGTTTAT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20336928937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5