BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26540.1 Length=1403 Score E Sequences producing significant alignments: (Bits) Value Ahg481514 jgi|Araly1|481514|fgenesh2_kg.4__574__AT2G26540.1 1561 0.0 > Ahg481514 jgi|Araly1|481514|fgenesh2_kg.4__574__AT2G26540.1 Length=1183 Score = 1561 bits (845), Expect = 0.0 Identities = 979/1043 (94%), Gaps = 12/1043 (1%) Strand=Plus/Plus Query 226 ATCTCTGAGCAAACCAGTTTTCGCTTCTCCTTCCCCAATTCGAAATTCAATTTCTTCGTC 285 |||||| ||||||| ||||||||||| |||| ||| |||||||||||||||||| |||| Sbjct 122 ATCTCTAAGCAAACGAGTTTTCGCTTGTCCTGCCCTAATTCGAAATTCAATTTCCCCGTC 181 Query 286 -CGTCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAA 344 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 TC-TCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAA 240 Query 345 CACGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAA-AATGGCATATCA 403 | ||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 241 CCCGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAACAA-GGGATATCA 299 Query 404 TCTTTAGAGCTTCCGTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCT 463 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTTTAGAGCTTCCCTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCT 359 Query 464 GTATTAAATGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTT 523 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATATTAAGTGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTC 419 Query 524 TTTCTCGAGGCGTGGAAGACAGCTAGCTCCCCAGAAGTGCAAATAGGTGTAGTAGGAGCT 583 ||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 420 TTTCTCGAGGCCTGGAAGGCGGCTAGCTCCCCAAAAGTGCAAATAGGTGTAGTAGGAGCT 479 Query 584 GGAACAGCCAGGGTATTTGAAGAGGCAATGAAATCGGCAGATGGATTGCTTCATGTTGCC 643 ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 480 GGAACCGCCAGGGTATTTGAAGAGGCAATGCAATCGGCAGAAGGATTGCTTCATGTTGCA 539 Query 644 TTTACACCATCAAAAGCAACTGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGC 703 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTTACACCATCAAAAGCAACGGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGC 599 Query 704 AAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGG 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGG 659 Query 764 TTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAG 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAG 719 Query 824 AGTGTTGATACGGTGCTCCTGCAACAGGCACTATCTGCTCCTGTTCTTTCTGTAGCTTCT 883 ||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||| Sbjct 720 AGTGTTGATACAGTGCTTCTGCAACAGGCAGTGTCTGCTCCTGTTCTTTCTGTAGCTTCA 779 Query 884 CCTTCTGCAGTTCGCGCCTGGCTGCATCTGATTCAAAATGAGGAGCAATGGAGCAATTAC 943 |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 780 CCTTCTGCAGTTCGGGCCTGGCTGAATCTGATTCAAAACGAGGAGCAATGGAGCAATTAC 839 Query 944 GTTGCCTGCATTGGAGAGACAACTGCATCAGCTGCTAGAA-GACTAGGATTGAAAAACGT 1002 |||||||||||||||||||||||||| |||||||| | || | |||||| |||||||||| Sbjct 840 GTTGCCTGCATTGGAGAGACAACTGCTTCAGCTGCAA-AACGTCTAGGACTGAAAAACGT 898 Query 1003 CTACTACCCAGAGA-AACCAGGACTTGAAGGGTGGGTCGAGAGCATAATGGAAGCTCTAG 1061 ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 899 GTACTACCCAGA-ACAACCAGGACTTGAAGGGTGGGTCGAGAGCATCATGGAAGCTCTAG 957 Query 1062 GTGCTCACGCAGATTCAAGTAACCCTAGCAGCAGGAATTGAATTACACTTGTGCCATCCT 1121 ||||||||| ||||||||| ||| ||||| ||||||||||||| ||||||||||||| || Sbjct 958 GTGCTCACGAAGATTCAAGAAACTCTAGCGGCAGGAATTGAATCACACTTGTGCCATTCT 1017 Query 1122 CTCATAGATTTTACTTATGGAGGACTTTGAGTTTGGTCAGTGCCTGTAATTTAGAGGACA 1181 ||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 1018 CTCATAGATTTTACTC-TGGAGGACTTTGAATTTGGACAGTGCATGTAATTTAGAGGACA 1076 Query 1182 GGGAAAAAGAAAGCAAATGAT-GCTTTTGAGAAAATACTGAAGCCCTTGTAAGATATCTC 1240 ||||||||||| |||||||| | | |||||||| |||| |||||||||||||||||||| Sbjct 1077 TGGAAAAAGAAACCAAATGATTG-TGTTGAGAAA-TACTCAAGCCCTTGTAAGATATCTC 1134 Query 1241 AGATAGCTTTTGTCGTACAGTAT 1263 ||||||||||||| | ||||||| Sbjct 1135 AGATAGCTTTTGTAGAACAGTAT 1157 Score = 97.1 bits (52), Expect = 3e-19 Identities = 92/109 (84%), Gaps = 11/109 (10%) Strand=Plus/Plus Query 66 AAAGCGACTACGATTCCATTTTCACCGGCGCTTCCGTGAGACAACATCTCTC-CA-TCT- 122 |||||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||| Sbjct 2 AAAGCGACGACGATTCCATTTTCACCGGCGCTTCCGTGCGACAACATCTCTCTCTCTCTA 61 Query 123 --TG---GAACTTTTTCTAATGGCATTATTACTCCTTTCTCACTGCTCT 166 | ||||| |||||||||||||| |||||||||||||||||| Sbjct 62 CCTCACAGAACTATTTCTAATGGCATTG---CTCCTTTCTCACTGCTCT 107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52450267365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5