BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26570.1 Length=2583 Score E Sequences producing significant alignments: (Bits) Value Ahg481517 jgi|Araly1|481517|fgenesh2_kg.4__577__AT2G26570.1 3600 0.0 > Ahg481517 jgi|Araly1|481517|fgenesh2_kg.4__577__AT2G26570.1 Length=2494 Score = 3600 bits (1949), Expect = 0.0 Identities = 2220/2351 (94%), Gaps = 17/2351 (1%) Strand=Plus/Plus Query 209 ACAATCTCAAACTGATACTGAAGAGACTCAACAATCTCAAACTGATGACACTACCGGCAA 268 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 152 ACAATATCAAACTGATACTGAAGAGACTCAACAATCTCAAACTGATAACACTACCGGCAA 211 Query 269 TGCGAAGATTTATGTCGATGACACGTTTTCGCCTTCTGATGCTGCAACCGCTGCGGTGTT 328 | |||| ||||||||||||| |||||||||||| |||| ||||||||| ||||||| ||| Sbjct 212 TACGAAAATTTATGTCGATGGCACGTTTTCGCCATCTGTTGCTGCAACTGCTGCGGGGTT 271 Query 329 AACCGGAAAAGATAGTACGAGTACAACAATTGTAGAAGAAGTGATGGAGCCAGATGAGAT 388 || ||| ||||||||||||| |||||||| ||||||||||||||||||| || |||| Sbjct 272 CACTGGACAAGATAGTACGAGGACAACAATCGTAGAAGAAGTGATGGAGCAAGGGGAGAC 331 Query 389 TGGTTTACCTAGTGTCAAGATTACCGAGGCTGCGACGGGTACAGCAAGAAATGGTGGGGG 448 |||||||||| |||| | |||||| ||||||||| ||||||||||||||||||| || Sbjct 332 TGGTTTACCTCGTGTGAGGATTACTGAGGCTGCGGTGGGTACAGCAAGAAATGGT---GG 388 Query 449 GTCACCTAGAACTGTATCATCTCCTAGATTTTCAGGATCACCGGTGAGCACTGGAACACC 508 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 389 TTCACCTAGAACTGTATCATCTCCTAGATTTTCAGGATCACCGGTGAGCACCGGAACACC 448 Query 509 GAAAAATGTGGACTCACATCGAGGTTTAATCGATACCGCAGCGCCATTTGAATCTGTTAA 568 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 449 GAAAAATGTGGACTCACATCGAGGTTTAATCGACACTGCAGCGCCATTTGAATCTGTTAA 508 Query 569 AGAAGCTGTATCAAAATTTGGAGGAATTACTGACTGGAAGTCTCACCGAATGCAAGCGGT 628 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 509 AGAAGCTGTCTCAAAATTTGGAGGAATTACTGACTGGAAATCTCACCGAATGCAAGCGGT 568 Query 629 AGAGAGACGAAAGCTTATTGAAGAAGAGCTTAAAAAGATTCATGAGGAGATTCCTGAGTA 688 ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 569 AGAGAGACGCAAGCTTATAGAAGAAGAGCTTAAAAAGATCCATGAGGAGATTCCTGAGTA 628 Query 689 CAAAACACATTCAGAAACTGCAGAGGCTGCAAAACTGCAAGTGCTTAAGGAGCTGGAAAG 748 |||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 629 CAAAACACATTCGGAAACAGCTGAGGCTGCAAAACTGCAAGTGCTTAAGGAGCTAGAAAG 688 Query 749 CACAAAGAGACTTATAGAACAGTTGAAGCTTAATTTGGACAAGGCACAAACAGAAGAACA 808 |||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 689 CACAAAGAGACTCATAGAACAATTGAAGCTTAATTTGGAGAAGGCGCAAACAGAAGAACA 748 Query 809 ACAGGCGAAGCAAGACTCGGAGCTTGCTAAGCTGAGGGTTGAAGAGATGGAACAAGGAAT 868 |||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 749 ACAGGCGAAGCAGGATTCGGAGCTTGCTAAACTGAGGGTTGAAGAGATGGAGCAAGGAAT 808 Query 869 AGCTGAAGATGTCAGTGTTGCAGCTAAAGCGCAACTTGAGGTGGCTAAGGCGAGGCATAC 928 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 809 AGCTGAAGATGTCAGTGTTGCAGCTAAAGCGCAACTTGAGGTGGCCAAGGCGAGGCATAC 868 Query 929 AACAGCGATTACAGAGTTGTCTTCTGTCAAGGAGGAACTAGAAACTCTGCATAAGGAATA 988 |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 869 AACAGCAATTACAGAGTTGTGTTCTGTCAAGGAGGAGCTAGAAACTCTGCATAAGGAATA 928 Query 989 TGATGCTCTGGTGCAAGATAAAGATGTGGCTGTAAAGAAAGTAGAAGAAGCAATGTTGGC 1048 |||||| ||||||||||| ||||||| ||| ||||||||||| || |||||||||||||| Sbjct 929 TGATGCGCTGGTGCAAGAAAAAGATGCGGCCGTAAAGAAAGTCGAGGAAGCAATGTTGGC 988 Query 1049 GTCAAAAGAAGTTGAGAAGACAGTGGAAGAACTCACCATAGAGTTGATAGCTACAAAGGA 1108 ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| Sbjct 989 ATCAAAAGAAGTTGAGAAGACAGTTGAAGAACTTACCATAGAGCTGATAGCTACAAAGGA 1048 Query 1109 GTCATTGGAATCAGCACATGCTTCTCATTTAGAGGCGGAAGAACAGAGGATTGGAGCAGC 1168 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1049 GTCACTGGAATCAGCACATGCTTCTCATTTAGAGGCGGAAGAACAAAGGATTGGAGCAGC 1108 Query 1169 TATGGCTAGAGACCAGGATACTCACCGTTGGGAGAAGGAACTGAAGCAAGCGGAAGAGGA 1228 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1109 CATGGCCAGAGACCAGGATACTCACCGCTGGGAGAAGGAACTGAAGCAAGCGGAAGAGGA 1168 Query 1229 ACTCCAAAGACTTAACCAACAGATACATTCTTCGAAAGATCTAAAATCGAAGCTCGACAC 1288 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1169 ACTCCAAAAACTGAACCAACAGATACATTCTTCGAAAGATCTAAAATCGAAGCTTGACAC 1228 Query 1289 TGCCTCAGCGCTGCTTCTTGATTTGAAGGCGGAATTGGTAGCTTATATGGAATCCAAGCT 1348 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1229 TGCCTCAGCACTGCTTCTTGATTTGAAGGCAGAATTGGTAGCTTATATGGAATCCAAGCT 1288 Query 1349 AAAACAAGAAGCGTGTGACTCAACCACAAACACCGATCCTTCGACAGAAAACATGAGCCA 1408 |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1289 AAAACAGGAAGCGTGTGACTCAAACACAAACACTGATCCTTCGACAGAAAACATGAGCCA 1348 Query 1409 TCCAGATTTACATGCAGCTGTTGCCTCTGCAAAGAAGGAACTTGAAGAGGTCAATGTCAA 1468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1349 TCCAGATTTACATGCAGCTGTTGCCTCTGCAAAGAAGGAACTTGAAGAGGTCAATGTCAA 1408 Query 1469 TATTGAGAAAGCAGCTGCTGAAGTGAGTTGC-TTGAAATTGGCCTCCTCTTCCTTGCAAC 1527 ||| ||||||||| |||||||||||| || | |||||| | ||||||||||||||||||| Sbjct 1409 TATCGAGAAAGCATCTGCTGAAGTGAATT-CTTTGAAACTAGCCTCCTCTTCCTTGCAAC 1467 Query 1528 TGGAACTCGAGAAAGAAAAGTCTACTCTTGCCTCTATCAAACAGAGAGAAGGAATGGCCT 1587 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1468 TGGAACTCGAGAAAGAAAAGTCTACTCTTGCCTCAATCAAACAAAGAGAAGGAATGGCCT 1527 Query 1588 CTATAGCAGTAGCTTCTATAGAGGCTGAAATTGACAGAACGAGGTCGGAAATAGCTTCGG 1647 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1528 CTATAGCAGTTGCTTCTATAGAGGCTGAAATTGACAGAACGAGGTCAGAAATAGATTCGG 1587 Query 1648 TTCAGTCAAAGGAGAAAGACGCGAGAGAGAAAATGGTGGAGCTACCGAAGCAACTTCAGC 1707 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1588 TTCAGTCAAAGGAGAAAGACGCGAGAGATAAAATGGTGGAGCTACCCAAGCAACTTCAGC 1647 Query 1708 AAGCAGCAGAAGAGGCTGATGAAGCAAAGTCACTTGCTGAAGTTGCTCGCGAAGAGCTAC 1767 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1648 AAGCAGCAGAAGAGGCTGATGAAGCAAAGTCACTTGCTGAAGTTGCTCGTGAAGAGCTTC 1707 Query 1768 GAAAGGCGAAAGAAGAAGCAGAGCAAGCAAAAGCTGGAGCAAGTACAATGGAGAGCAGGC 1827 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1708 GAAAGGCGAAAGAAGAAGCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCAGGC 1767 Query 1828 TATTTGCTGCGCAGAAGGAAATCGAAGCAGCTAAAGCTTCAGAGAGGCTGGCCTTAGCTG 1887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1768 TATTTGCTGCGCAGAAGGAAATCGAAGCAGCTAAAGCTTCAGAGAGGCTGGCCTTAGCTG 1827 Query 1888 CCATCAAGGCTTTGGAGGAGAGTGAATCAACATTGAAAGCTAATGACACCGATTCTCCAC 1947 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1828 CCATCATGGCTTTGGAGGAGAGTGAATCAACATTGAAAGCTAATGACACCGATTCTCCAC 1887 Query 1948 GAAGCGTTACACTTTCGCTAGAAGAGTACTATGAGCTCAGCAAACGTGCTCACGAGGCAG 2007 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1888 GAAGCGTTACACTTTCACTAGAAGAGTACTATGAGCTCAGCAAACGTGCCCACGAGGCAG 1947 Query 2008 AAGAACTCGCGAACGCAAGAGTAGCAGCAGCGGTTTCAAGAATCGAGGAAGCTAAAGAAA 2067 ||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 1948 AAGAACTGGCGAACGCCAGAGTAGCAGCGGCGGTTTCAAGGATCGACGAAGCTAAAGAAA 2007 Query 2068 CAGAAATGAGAAGCTTGGAGAAGTTGGAAGAAGTAAACAGAGACATGGATGCGAGAAAGA 2127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2008 CAGAAATGAGAAGCTTGGAGAAGTTGGAAGAAGTAAACAGAGACATGGATGCGAGAAAGA 2067 Query 2128 AGGCATTAAAAGAAGCAACTGAAAAGGCTGAGAAGGCCAAAGAAGGGAAGTTGGGGGTGG 2187 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2068 AGGCATTAAAAGAAGCAACTGAAAAGGCTGAGAAGGCGAAAGAAGGGAAGTTGGGGGTGG 2127 Query 2188 AGCAGGAGCTGAGGAAATGGAGGGCAGAACATGAACAAAAGAGAAAGGCTGGTGATGGAG 2247 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2128 AACAGGAGCTGAGGAAATGGAGGGCAGATCATGAACAAAAGAGAAAGGCTGGTGATGGAG 2187 Query 2248 TCAACACTGAGAAAAACCTAAAAGAAAGCTTTGAAGGAGGAAAGATGGAGCAATCACCTG 2307 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 2188 GCAACACTGAGAAAACCCAAAAAGAAAGCTTTGAAGGAGGAAAGATGGAGCAATCACCTG 2247 Query 2308 AAGCTGTTGTTTATGCCTCCAGCCCAAGTGAGTCATATGGAACAGAAGAAAACTCTGAAA 2367 | |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2248 AGGCTGCTGTTTATACCTCCAGCCCAAGTGAGTCATATGGAACAGAAGATAACTCTGAAA 2307 Query 2368 CCAATCTATCCCCACAGACCAAGTCTCGAAAGAAAAAGAAGAAGCTTTCTTTCCCCCGGT 2427 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2308 CCAATCTGTCCCCACAGACCAAGTCTCGAAAGAAAAAGAAGAAGCTTTCTTTCCCCCGTT 2367 Query 2428 TTTTTATGTTCTTGTCAAAGAAGAAGTCACATAATAATTGAGTTCAGTTTCAATTCAAAC 2487 |||||||||| ||||||||||| |||||||| ||| | || |||||||||||||||||| Sbjct 2368 TTTTTATGTTTTTGTCAAAGAAAAAGTCACAGAAT--T-GATTTCAGTTTCAATTCAAAC 2424 Query 2488 GCCTAATTCTC-TT-T-TG----ATCTATTGGAGCTTTGTATTC-AGAAAGAACTCCATT 2539 ||||||| || || | || ||||||||||||||| | ||| ||||||||||||||| Sbjct 2425 ACCTAATTATCATTGTCTGTGTCATCTATTGGAGCTTT-TCTTCCAGAAAGAACTCCATT 2483 Query 2540 TGAACAAGTAT 2550 ||||||||||| Sbjct 2484 TGAACAAGTAT 2494 Score = 261 bits (141), Expect = 2e-68 Identities = 182/201 (91%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 26 AATTTCAGGTTACAGGGGAATGGAGGACTTAAAAACTGTTGAAGCATCTGATAATGTTGT 85 |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2 AATTTCAGGTAACAGGCGAATGGAGGACTTAAAAACTGTTGAAGCATCTGAT---GTTGT 58 Query 86 TAGTGATAATGTTGAGAA-AGTCAATCCTGAGTTGATTGATTCCACCATTCGAGAATCTA 144 |||||| |||||||| || ||| |||||||||||||| || ||| |||||||||||||| Sbjct 59 TAGTGACAATGTTGA-AACAGTAAATCCTGAGTTGATCGAATCCGCCATTCGAGAATCTT 117 Query 145 ACATACAATCTGCAACAAAGGTTGATAATATTCCACAATCTCAAACTGACACTGAAGAGA 204 ||| |||| || |||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 118 ACACACAAAATGTAACAAAGGTTGATAATATTCCACAATATCAAACTGATACTGAAGAGA 177 Query 205 CTCAACAATCTCAAACTGATA 225 ||||||||||||||||||||| Sbjct 178 CTCAACAATCTCAAACTGATA 198 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97396756465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5