BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26590.1 Length=1183 Score E Sequences producing significant alignments: (Bits) Value Ahg320449 jgi|Araly1|320449|fgenesh1_pm.C_scaffold_4000506 1393 0.0 > Ahg320449 jgi|Araly1|320449|fgenesh1_pm.C_scaffold_4000506 Length=912 Score = 1393 bits (754), Expect = 0.0 Identities = 861/912 (94%), Gaps = 9/912 (1%) Strand=Plus/Plus Query 103 ATGAGTTCAAGCGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGG 162 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTTCAAGTGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGG 60 Query 163 AAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATA 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATA 120 Query 223 GCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTA 282 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 GCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAACACAGTT 180 Query 283 GAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCA 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCA 240 Query 343 GACAGGGTGTATATTCTGAAGTTCAACAGTGATGACCGCAAGTTATTCTTCTGGATGCAG 402 |||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 241 GACAGGGTGTTTATTCTGAAGTTCAACAGTGACGACCGCAAGTTGTTCTTTTGGATGCAG 300 Query 403 GAGCCAAGAGCTGAAGGTGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAA 462 ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| Sbjct 301 GAGCCAAGAGCTGAAGGTGATGCTGAACTGTGCTCTTTGGTCAATCAATACCTCAATCAA 360 Query 463 -C-C-A--C-T---AGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAG 513 | | | | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCACTAGGCATAAAAGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAG 420 Query 514 CTGGAAGACATGGCAGAGGATAATACATCATCTAGAGCGGGAAACTTGGTTGTACCAAAT 573 |||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct 421 CTGGAAGACATGGCAGAGGATAATGCCTCGTCTAGAGCTGGAAACTTGGTTGTACCAAAT 480 Query 574 TTGTCTTCAGAGGTGAGTGACGTGACATCGTCCTCTGGACCGGTTAAGCTGGCAGACCTG 633 |||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 481 TTGTCTACAGAGGTGAGTGACGTGACATCTTCGTCTGGACCAGTTAAGCTGGCAGACCTG 540 Query 634 CAAAGAATTCTGAACAACCTCTCTGGTGGCCCTGTAGGTATTGCTGGAGATCAAGACGAA 693 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 541 CAAAGAATTCTGAACAACCTCTCTGGTGTCCCTGTAGGTATTGCTGGAGATGAAGACGAA 600 Query 694 GGTTTAGCATTAGGGGATATCTTGAAACCGGAGTTGATAATGCCATTGCTTGAGGCGTTG 753 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 601 GGTTTAGCATTAGGGGATATCTTGAAGCCGGAGTTGATAATGCCATTGCTTGAGACGTTG 660 Query 754 CCGGTACAAGAACGACTATCTTCGCATTTACCTGAGGGTCATTCTAGGGCAGAAGATATA 813 || ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 661 CCTGTACAAGAACGACTATCTTTGCATTTACCTGAGGGTCACTCTAGGGCAGAAGATATA 720 Query 814 CTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATGTACTC 873 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 721 CTGGAGTTGTTGCAGAGCCCTCCTTTCCGTCAACAAGTAGATGCGTTTACCTATGTACTT 780 Query 874 CGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATACAAGTTCACA 933 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 781 CGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAGATACAAGTTCACA 840 Query 934 GTGGACTCATTCCTTGAAGCACTTGAAGACTCGGTTTCAACGCAATCAAGGGATGCGATG 993 || | |||||||||||| ||||| || ||||||||| |||||||||||| || || ||| Sbjct 841 GTTGTCTCATTCCTTGAGGCACTAGAGGACTCGGTTGCAACGCAATCAACAGAGGCAATG 900 Query 994 GATGAGAGTTAA 1005 |||||||| ||| Sbjct 901 GATGAGAGCTAA 912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44146337886 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5