BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26640.1 Length=1823 Score E Sequences producing significant alignments: (Bits) Value Ahg932956 jgi|Araly1|932956|scaffold_400944.1 2281 0.0 > Ahg932956 jgi|Araly1|932956|scaffold_400944.1 Length=1571 Score = 2281 bits (1235), Expect = 0.0 Identities = 1441/1543 (93%), Gaps = 4/1543 (0%) Strand=Plus/Plus Query 54 AAGCTATGGATGTAGAGCAAAAGAAACCGTTAATCGAATCATCAGATCGTAATCTACCTG 113 ||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || |||| Sbjct 17 AAGCTATGGATGTTGAGCATAAGAAGCCGTTGATCGAATCATCGGATCGTAACCTTCCTG 76 Query 114 ATTTCAAAAAATCAGTGAAGCTTAAATATGTGAAGCTTGGTTACCATTACCTTATCACTC 173 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 77 ATTTCAAAAAATCAGTGAAGCTTAAGTATGTGAAGCTTGGTTACCATTACCTTATCACAC 136 Query 174 ATGGAATGTACCTTTTCCTCTCCCCATTAGTACTTGTAATCGCTGCACAGATTTCAACTT 233 ||||||||||||| |||||||||||||| || ||||| |||||||| |||||||| || | Sbjct 137 ATGGAATGTACCTCTTCCTCTCCCCATTGGTGCTTGTGATCGCTGCGCAGATTTCGACAT 196 Query 234 TCTCTGTCACCGATCTTCGTAGCCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGG 293 ||||| ||| |||| |||| | ||||||||||||||||||||||||||||||||||||| Sbjct 197 TCTCTATCAGCGATATTCGCAACCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGA 256 Query 294 TTGTTTGTTCTATGCTGCTTGT-TTTCTTAATGACTATTTACTTCATGACTCGACCACGT 352 |||||||||||||||| ||||| ||| |||||||||||||||||||||||||| || ||| Sbjct 257 TTGTTTGTTCTATGCTTCTTGTGTTT-TTAATGACTATTTACTTCATGACTCGGCCGCGT 315 Query 353 CCTGTCTACTTGGTGAACTTCTCGTGCTTTAAACCCGATGAGTCACGAAAATGCACTAAA 412 ||||| ||||||||| |||||||||||||||||||||||||||| || |||||||||||| Sbjct 316 CCTGTGTACTTGGTGGACTTCTCGTGCTTTAAACCCGATGAGTCCCGTAAATGCACTAAA 375 Query 413 AAGATCTTTATGGATCGTTCTAAACTCACTGGCTCTTTCACAGAGGAGAATCTTGAGTTC 472 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 376 AAGATCTTTATGGATCGTTCTAAACTCACTGGTTCTTTCACAGAGGAGAATCTTGAGTTC 435 Query 473 CAGCGTAAGATTCTACAACGTTCGGGGCTCGGGGAATCGACTTACTTACCCGAGGCTGTA 532 ||||| ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 436 CAGCGCAAGATTCTACAACGTTCGGGGCTTGGTGAATCTACTTATTTACCTGAGGCTGTT 495 Query 533 CTTAATGTTCCGCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCCGAGACTGTTATG 592 || |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 496 CTCAATGTTCCTCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCGGAGACTGTGATG 555 Query 593 TTTGGAGCTATTGATGAGCTTCTTGCGAAGACGAATGTGAACCCGAAGGATATTGGGATC 652 ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 556 TTTGGAGCTATTGATGAACTTCTTGCCAAGACGAATGTCAACCCGAAGGATATTGGGATC 615 Query 653 TTGATTGTTAACTGTAGTTTGTTTAACCCGACACCTTCGTTATCTGCTATGGTTGTTAAT 712 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 616 TTGATTGTTAATTGTAGTTTGTTCAACCCGACACCTTCGTTATCTGCTATGGTTGTTAAT 675 Query 713 CACTATAAGCTCCGCGGGAATATACTTAGTTACAACTTGGGAGGAATGGGTTGCAGTGCT 772 |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 676 CACTATAAGCTCCGTGGGAACATACTCAGTTACAACTTGGGAGGAATGGGTTGCAGTGCT 735 Query 773 GGTTTGATTTCTA-TTGATCTTGCTAAACATCTTCTTCACTCTATTCCCAACACTTATGC 831 |||||||| || | |||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 736 GGTTTGATCTC-AGTTGATCTTGCTAAACATCTTCTTCACTCCATTCCTAACACTTATGC 794 Query 832 AATGGTGATTAGTATGGAGAACATTACGTTGAACTGGTATTTCGGGAATGACCGGTCGAA 891 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 795 AATGGTGATTAGCATGGAGAATATTACATTGAACTGGTATTTCGGGAATGACCGCTCGAA 854 Query 892 GCTTGTTTCTAATTGTCTGTTTAGAATGGGAGGTGCAGCGATTCTTCTTTCGAACAAAAG 951 ||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| | Sbjct 855 GCTTGTTTCCAATTGTCTTTTTAGAATGGGAGGTGCAGCGATTCTTCTCTCTAACAAACG 914 Query 952 ATGGGACAGAAGAAGATCGAAATATGAGCTTGTTGATACGGTTAGGACTCACAAGGGAGC 1011 |||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 915 ATGGGACAGAAGAAGATCGAAATACGAGCTTGTTGATACGGTTAGAACCCACAAGGGAGC 974 Query 1012 TGATGATAAGTGTTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGT 1071 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 975 TGATGATAAGTGCTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGT 1034 Query 1072 TACCTTGTCGAAAGAACTTATGGCTGTTGCGGGTGATGCTCTAAAGACAAATATTACGAC 1131 |||| ||||||||||||| ||||||||||| |||||||||||||||||||| || || || Sbjct 1035 TACCCTGTCGAAAGAACTAATGGCTGTTGCTGGTGATGCTCTAAAGACAAACATCACAAC 1094 Query 1132 GTTAGGACCACTGGTTTTACCGACATCTGAACAGCTTCTGTTCTTTGCAACGTTAGTGGG 1191 |||||||||||||||| | |||||||||||||||||||| ||||||||||| |||||||| Sbjct 1095 GTTAGGACCACTGGTTCTGCCGACATCTGAACAGCTTCTATTCTTTGCAACATTAGTGGG 1154 Query 1192 AAGAAAACTCTTCAAGATGAAGATCAAGCCTTACATCCCAGACTTCAAACTAGCGTTTGA 1251 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1155 ACGAAAACTCTTCAAGATGAAGATCAAGCCATACATCCCAGACTTCAAACTAGCGTTTGA 1214 Query 1252 GCATTTCTGCATCCACGCAGGAGGGAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAA 1311 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1215 GCATTTCTGCATCCACGCGGGAGGAAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAA 1274 Query 1312 ACTCACAGAGTGGCATATGGAGCCCTCGAGGATGACACTCTACCGTTTTGGTAACACGTC 1371 ||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| || Sbjct 1275 ACTCACAGATTGGCACATGGAACCATCAAGAATGACACTCTACCGTTTTGGTAACACATC 1334 Query 1372 CAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCCAAAGGAAGGATCAAGAAAGG 1431 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1335 CAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCAAAAGGAAGGATCAAGAAAGG 1394 Query 1432 TGATAGAATTTGGCAGATAGCTTTTGGTTCGGGGTTCAAGTGCAACAGCTCGGTTTGGAG 1491 ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| | Sbjct 1395 CGATAGAATTTGGCAGATAGCTTTTGGTTCTGGTTTCAAGTGCAACAGCTCAGTTTGGCG 1454 Query 1492 AGCGGTAAGGTCGGTAAACCCTAAGAAAGAGAAGAACCCATGGATGGATGAAATTCATGA 1551 |||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1455 AGCGGTAAGGTCAGTCAACCCTAAAAAAGAGAAGAACCCGTGGATGGATGAAATTCATGA 1514 Query 1552 GTTCCCAGTTGAAGTCCCCAAGGTCTCCACAATCTAGAAACCA 1594 |||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1515 GTTCCCAGTTGATGTCCCCAAGGTCTCAACAATCTAGAAACCA 1557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68448170265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5