BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26660.1 Length=1111 Score E Sequences producing significant alignments: (Bits) Value Ahg932958 jgi|Araly1|932958|scaffold_400946.1 1376 0.0 > Ahg932958 jgi|Araly1|932958|scaffold_400946.1 Length=912 Score = 1376 bits (745), Expect = 0.0 Identities = 842/889 (95%), Gaps = 5/889 (1%) Strand=Plus/Plus Query 1 ATGAAGTTCGGCAAGAGCCTAAGCAACCAGATCGAAGAAACTTTACCTGAATGGCGCGAC 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23 ATGAAATTCGGCAAGAGCCTAAGCAACCAGATCGAAGAAACTTTACCTGAATGGCGCGAC 82 Query 61 AAATTCCTCTCATACAAAGAACTCAAGAAGAAGCTCAAGCTTATGGAGCCACGAAGCGTC 120 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 83 AAATTTCTCTCCTACAAAGAACTCAAGAAGAAGCTCAAGCTTATGGAGCCACGAACCGTC 142 Query 121 GAGAATCGTCCAAATAAACGTTCGAGATCCGATTCCAATTCTGTCGACACAGATCCAACG 180 ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 143 GAGAATCGTCCAACCAAACGTTCGAGATCCGATTCCAATTCTGTCGACGCAGATCCAACG 202 Query 181 GTTGGTATGACCAAGGAAGAGCTTGATTTCATTAGTCTTCTTGAAGATGAGCTTGAGAAA 240 | ||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 203 GCTGGTATGACCAAGGAAGAGCTCGATTTCATTAGTCTTCTCGAAGACGAGCTTGAGAAA 262 Query 241 TTCAATTCCTTCTTCGTTGAGCAAGAGGAAGAGTATATCATTAGATTGAAGGAATTGAAG 300 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 263 TTCAATTCCTTCTTCGTTGAGCAAGAGGAAGAGTATATCATTAGATTAAAGGAATTGAAG 322 Query 301 GACCAAGTGGCGAAA-GCGAAGAATTCTAATGAAGAGATGATAAATATAAAGAAAGAGAT 359 || |||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||| Sbjct 323 GATCAAGTGGC-AAAGGCGACGAATTCGAATGAAGAGATGATAAATATAAAGAAAGAGAT 381 Query 360 TGTTGATTTTCATGGAGAAATGGTTTTGTTGATGAATTATAGTGCTCTTAACTATACAGG 419 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 382 TGTTGATTTTCATGGAGAAATGGTTTTGTTAATGAATTATAGTGCTCTTAACTATACAGG 441 Query 420 ATTGGCAAAGATTCTCAAAAAGTATGACAAAAGAACCGGTGCTTTAATCCGTTTACCATT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 ATTGGCAAAGATTCTCAAAAAGTATGACAAAAGAACCGGTGCTTTAATCCGTTTACCATT 501 Query 480 TATCCAAAAGGTTTTGCAAGAACCTTTCTTCACAACTGACCTACTCAACACATTTGTGAA 539 ||||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 502 TATCCAAAAGGTTCTACAAGAACCTTTCTTCACTACCGACCTGCTCAACACATTTGTGAA 561 Query 540 AGAGTGCGAGGCTATGCTGGACCGCCTCTTTCCGTCTAACAAAAGTCGGAATCTGGATGA 599 |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| Sbjct 562 AGAGTGCGAGGCTATGCTCGACCATCTCTTCCCGTCTAACAAAAGTCGGAATCTGGATGA 621 Query 600 AGAAG-GAGAG--CCGACAACTTCTGGAATGGTCAAGACAGGAACGGACGATTCTGAACT 656 ||||| | ||| |||||||||||||||| ||||||||||| ||| ||||| ||||| || Sbjct 622 AGAAGAGGGAGAACCGACAACTTCTGGAACGGTCAAGACAGCAACAGACGACTCTGATCT 681 Query 657 TCTTAGAGTACCAAAAGAACTGTCTGAGATTGAGTACATGGAGAGCTTGTATATGAAGAG 716 |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 682 TCTTAGAGTACCGAAAGAACTGTCTGAGATTGAGTATATGGAGAGCTTGTTTATGAAGAG 741 Query 717 CACTGTGTCGGCATTAAAAGTATTAAAGGAAATCCGCAGTGGTAGCTCAACAGTTAGCGT 776 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 742 CACTGTTTCGGCATTAAAGGTATTAAAGGAAATCCGCAGTGGTAGCTCAACAGTAAGCGT 801 Query 777 CTTCTCGTTGCCACCGTTACCGGCAAGTGGATTAGAAGATGATTCATGGAAGAAGAAAGT 836 ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 802 CTTCTCGATGCCACCATTACCGGCAAGTGGATTAGAAGATGATTCATGGAAGAAGAAGGT 861 Query 837 TGGTGTCCTTGAACAAGTAGCGAAATGAATTATGAGTATTATTATTTTT 885 ||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 862 TGGTGTCCTCGAACAAGTAGCGAAATGAATTATGACTATTATTATTTTT 910 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41401487862 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5