BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26695.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481535 jgi|Araly1|481535|fgenesh2_kg.4__595__AT2G26695.1 922 0.0
> Ahg481535 jgi|Araly1|481535|fgenesh2_kg.4__595__AT2G26695.1
Length=634
Score = 922 bits (499), Expect = 0.0
Identities = 589/634 (93%), Gaps = 0/634 (0%)
Strand=Plus/Plus
Query 1 AATTCCTTTCGCTTACCAGTCTCTTGTCTTCTCAGGTTGTTAGAGATACATAGATAGAAA 60
||||||||||||| ||||||||||||||||||||||| || ||||||||||| | |||||
Sbjct 1 AATTCCTTTCGCTCACCAGTCTCTTGTCTTCTCAGGTGGTAAGAGATACATAAAGAGAAA 60
Query 61 TATGAGCTGGACCGGAGGAGATTGGCTATGTGGTGCGTGTCAGCACGCAAACTTCAAGAA 120
||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 61 GATGAGTTCGACCGGAGGAGATTGGCTATGTGGTGCATGTCAACACGCAAACTTCAAAAA 120
Query 121 AAGAGAATCATGTCAAAAATGCGGATACCCCAAATTTGGAGGGGTTGATGTGTCAACGTA 180
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AAGAGAGTCATGCCAAAAATGCGGATACCCCAAATTTGGAGGGGTAGATGTGTCAACGTA 180
Query 181 CTTGTACAACAGGACCGAAGTTATGGCTGGTGATTGGTATTGTGGTGCATTGAATTGTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGTACAACAGGACCGAAGTTATGGCTGGTGATTGGTATTGTGGTGCATTGAATTGTGG 240
Query 241 GAGCCACAATTACGCGAGCCGAACAAGTTGTTACCGATGTGGAATGATCAAAGTCGAGTA 300
||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 241 GAGCCACAATTACGCAAGCCGAACAAGTTGCTACCGATGTGGAATGGTTAAAGTCGAGTA 300
Query 301 TACGGAACAGTACTATGGAGCTCAAATGGTTGCTTACGGGAATGATGGCGCAGCTTGTCC 360
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TACGGAACAGTACTACGGTGCTCAAATGGTTGCTTACGGGAATGATGGCACAGCTTGTCC 360
Query 361 TCCCGGATGGAAAACTGGCGATTGGGTTTGTCCTAGGGTGGGATGTGGGGTTCATAACTA 420
||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 361 TCCCGGATGGAAAACTGGCGATTGGTTTTGTCCTAGGGTCGGTTGTGGGGTTCATAACTA 420
Query 421 CGCAAGCAGGGCAGAATGCTTCAAATGCAAGACAACAAGAGATTATGGTGGCGTCTAAAT 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCAAGCAGGGCTGAATGCTTCAAATGCAAGACAACAAGAGATTATGGTGGCGTCTAAAT 480
Query 481 GGACGAGAAAGAGCTAATGAAGAATCTCTTGTTTTAATTATACCTTTCAACAAGTGTTTC 540
||| ||| ||||||| ||||||||||| ||||||||||| || ||| |||||||||||||
Sbjct 481 GGATGAGGAAGAGCTTATGAAGAATCTATTGTTTTAATTGTATCTTACAACAAGTGTTTC 540
Query 541 TACTTTCTAACATGCATGACGCTTTCTTACGTTGACTTGAAATCAATTGAAAGTTTAGAC 600
|||||||||||||||||||||| |||||||||||||||||||| | ||||| | ||
Sbjct 541 TACTTTCTAACATGCATGACGCCTTCTTACGTTGACTTGAAATGTGTACCAAGTTGAAAC 600
Query 601 TCGTGCAAATTAACGTAAGTACAAATAGTTGCAA 634
||||||||||||| |||| |||| || |||||||
Sbjct 601 TCGTGCAAATTAATGTAACTACATATTGTTGCAA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5