BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26810.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481556 jgi|Araly1|481556|fgenesh2_kg.4__616__AT2G26810.1 1247 0.0
> Ahg481556 jgi|Araly1|481556|fgenesh2_kg.4__616__AT2G26810.1
Length=1010
Score = 1247 bits (675), Expect = 0.0
Identities = 919/1027 (89%), Gaps = 56/1027 (5%)
Strand=Plus/Plus
Query 21 AGTCATCAACAAGCGCAATTCTCTAACAAAGTAACAAAGAGGAGTCAAAGATGGGCAGTG 80
||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||
Sbjct 1 AGTCATCAACAAGCGCACCTCTCAAACAAAGTAACAAAGAGTAGTCAAAGATGGTCAGTG 60
Query 81 AAAGTGATAAAGGTAGAGAAGCAATTGTTgaagaagaagaagaagagaTAGTCTGCTTGG 140
|||||||||||| ||||||||||| | |||||| || ||||| |||||||||||||
Sbjct 61 AAAGTGATAAAGTTAGAGAAGCAA---ATCAAGAAG-AG--GAAGAAATAGTCTGCTTGG 114
Query 141 AGTCTTTCTTCATCAACGATGATTATCAGTTGACGAAGTTTACGTTTGGTTCTCATGTTC 200
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 115 AGTCTTTCTTCATCAACGATGATTATCAGTTGACGAAATTTACATTTGGGTCTCATGTTC 174
Query 201 TTGAGCTCTACTGTCTCCAATCAGCTTCAACTGATTTTGATTTAACAGGGCAGCTGGTTT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 175 TTGAGCTCTACTGTCTCCAATCAGCTTCAACTGATTTTGATTTAACAGGGCAGCTCGTTT 234
Query 261 GGCCTGGTGCGATGCTTATGAATGGTTATCTCTCAGAAAATGCTGACATTCTCCAGGGAT 320
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 235 GGCCTGGTGCGATGCTTATGAACGGTTATCTCTCAGAAAATGCTGACATTCTCCAGGGAT 294
Query 321 GTTCAGTTTTGGAGTTGGGATCTGGCGTTGGTATAACTGGAGTCCTATGTAGCAAATTTT 380
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 295 GTTCAGTTTTAGAGTTGGGATCTGGCGTTGGTATAACCGGAGTCCTCTGTAGCAAATTTT 354
Query 381 GCCGTAAAGTTATTTTTACTGACCACAACGATGAAGTGCTCAAGATACTGAAGAAAAACA 440
||||||||||||||||||||||||| ||| | | || ||| |||||||||||||||
Sbjct 355 GCCGTAAAGTTATTTTTACTGACCATAAC---G-A-TG---AAG-TACTGAAGAAAAACA 405
Query 441 TTGACCTTCATGGACATTCAAGTGGTCCCAAACCCTCAGCTGAATTAGAGGCTGCAAAGC 500
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 406 TTGAGCTTCATGGACATTCAAGCGGTCCCAACCCCTCAGCTGAATTAGAGGCTGCAAAGC 465
Query 501 TTGAATGGGGAAATAGTGATCAGCTTGGTCAAATTTTAAAGAAACACAATGATGGCTTTG 560
| || ||||||||||||||||| || | | |||||||| |||||||||||||||||||||
Sbjct 466 TAGAGTGGGGAAATAGTGATCATCTAGATGAAATTTTACAGAAACACAATGATGGCTTTG 525
Query 561 ATCTTATTCTTGGAGCTG------ATAT-C---TG--C------TT-TC-A---G----C 593
|||||||||||||||||| |||| | || | || || | | |
Sbjct 526 ATCTTATTCTTGGAGCTGATATCTATATCCTTATGAACGATTTTTTATCTATCCGCTTAC 585
Query 594 AATCAAGTGTGCCATTGCTATTTGACAGTGTTGAGCAGCTTCTGCGGATCAGGGGACAAG 653
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AATCAAGTGTGCCATTTTTATTTGACAGTGTTGAGCAGCTTCTGCGGATCAGGGGACAAG 645
Query 654 GAAACTGCAAATTCATACTAGCATACGTATCACGGGCTAGACAGATGGATTCTGCAATCT 713
|||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 646 GAAACTGCAAGTTCATACTAGCATACGTCTCCCGGGCTAGACAGATGGATTCAGCGATCT 705
Query 714 TGAGAGAAGGCGCTCAGCACGGGATGCTGATGAATGAAGTTTCTGGGACTCGGTGTACCG 773
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 706 TGAGAGAAGGCGATCAGCACGGGATGCTGATGAATGAAGTTTCTGGGACTCGGTGTACGG 765
Query 774 TAGGAAACTTGGAAGGGGTCATATATGAAATCACACTTCAAAAGAAGA-GA--GGAATTG 830
|||||||||||||||||||||||||||||||||| |||||| |||||| || |||||||
Sbjct 766 TAGGAAACTTGGAAGGGGTCATATATGAAATCACTCTTCAATAGAAGAAGAAAGGAATTG 825
Query 831 TGTTCGAGTAACTTAGTTCCTTTGATACCTCAGAATTTTGTAACATTATTTTTATGTTAT 890
|||| || ||| ||| |||| |||| |||| ||||||||||| |||||||||||||||||
Sbjct 826 TGTTTGAATAATTTATTTCCCTTGAGACCTGAGAATTTTGTACCATTATTTTTATGTTAT 885
Query 891 TT-AGATGCATACATTTTTGGTGAAACGTTTACTAAAGTTACAGTTCAAAAAGTATACAA 949
|| |||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||
Sbjct 886 TTTAGATGCATACATTT--GGTGAATCCTTTACTAAAATTACAGTTCAAAAAGTATACAA 943
Query 950 TGACATTTGT-----G-G-ATGCTTTGAAGTGAATCCA-CATTGTTAGCTGAAAAACTGT 1001
|||||||||| | | ||||||||||||||| | | |||||||||||||||||||||
Sbjct 944 TGACATTTGTCATTTGTGGATGCTTTGAAGTGAAACTAACATTGTTAGCTGAAAAACTGT 1003
Query 1002 TGCAACT 1008
|||||||
Sbjct 1004 TGCAACT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5