BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26900.1 Length=1508 Score E Sequences producing significant alignments: (Bits) Value Ahg933010 jgi|Araly1|933010|scaffold_400998.1 1991 0.0 > Ahg933010 jgi|Araly1|933010|scaffold_400998.1 Length=1274 Score = 1991 bits (1078), Expect = 0.0 Identities = 1206/1269 (95%), Gaps = 3/1269 (0%) Strand=Plus/Plus Query 53 CTAAAACCCTTTTGATCAAAACATGGCTTCCATTTCCAGAATCTTACCAACAGATGGCAG 112 |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 1 CTAAAACCCTTTCGATCACAA-ATGGCTTCCATTTCCAGAATCTTACCAACAGATGGAAG 59 Query 113 ATTAAGTCAATGCAGAATCAACACCTCGTGGGTTCCTTCTACAACCAGAACTCAAACTCA 172 |||||||||||||||||||||||| || ||||||||| |||| |||||| ||||||| || Sbjct 60 ATTAAGTCAATGCAGAATCAACACTTCTTGGGTTCCTACTACGACCAGACCTCAAACCCA 119 Query 173 CTTAGATTTTCCCAAGTTAGTTTCTGTTAGTAACTCTGGGATAAGTTTGAGGATTCAGAA 232 |||||||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||| Sbjct 120 CTTAGATTATCCCAAGTTGGTTTCTGTTAGTAAGTCTGGAATTAGTTTGAGGATTCAGAA 179 Query 233 TAGTAAACCTATTAGCCCTGTCTTTGCTCTTGAAGCAACTTCCTCCAGGAGGGTTGTTTG 292 ||||||||| ||||||||||||||||||||||||||||| | || |||||||||| ||| Sbjct 180 TAGTAAACCCATTAGCCCTGTCTTTGCTCTTGAAGCAACAACTTCGAGGAGGGTTGCTTG 239 Query 293 CAAAGCTGCTGCTGGTGTGTCAGGTGACT-TACCTGAGAGTACTCCTAAGGAACTTAGTC 351 ||||||||| | |||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct 240 TAAAGCTGCTACAGGTGTGTCTGGTGA-TGTACCTGAGAGTACTCCTAAGGAACTTAGTC 298 Query 352 AGTATGAGAAGATTATTGAGCTTTTGACAACCCTTTTTCCACTTTGGGTTATTTTGGGAA 411 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 299 AGTATGAGAAGATTATTGAACTTTTGACGACCCTTTTTCCTCTTTGGGTTATTTTGGGAA 358 Query 412 CACTTGTTGGCATCTTCAAGCCATCCTTGGTTACATGGTTGGAAACAGATCTCTTTACTC 471 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 359 CACTTGTTGGCATCTTCAAGCCCTCTTTAGTTACATGGTTGGAAACAGATCTCTTTACTC 418 Query 472 TAGGTCTTGGATTTCTTATGCTTTCCATGGGTTTGACTCTTACGTTTGAAGATTTCAGAA 531 |||||||||||||||| |||||||| ||||| || |||||||||||||||||||| |||| Sbjct 419 TAGGTCTTGGATTTCTCATGCTTTCTATGGGATTAACTCTTACGTTTGAAGATTTTAGAA 478 Query 532 GATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGC 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGC 538 Query 592 CAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGCC 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 539 CAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGTC 598 Query 652 TTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCGTCAAACGTTGCTACTTACATTTCCA 711 |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 599 TTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCATCTAACGTTGCTACCTACATTTCCA 658 Query 712 AGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 AGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAA 718 Query 772 TGACTCCTCTTCTTACTAAGCTTCTTGCTGGTCAGCTTGTTCCCGTTGACGCTGCTGGAC 831 ||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 719 TGACTCCACTTCTCACTAAGCTTCTTGCTGGCCAGCTTGTTCCCGTTGATGCTGCTGGAC 778 Query 832 TTGCTCTTAGTACGTTCCAAGTAGTGTTGGTTCCTACCATAATTGGAGTTCTGGCAAATG 891 | ||| ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |||| Sbjct 779 TCGCTATTAGTACTTTCCAAGTAGTGTTGGTGCCTACTATAGTTGGAGTTCTGGCTAATG 838 Query 892 AGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTC 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTC 898 Query 952 TGACTACTCTGCTCTGTGCCAGCCCTATTGGACAAGTTGCAGATGTTTTGAAAACCCAAG 1011 |||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 899 TGACCACTCTGCTGTGTGCCAGCCCTATTGGACAAGTTTCAGAGGTTTTGAAAACCCAAG 958 Query 1012 GAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATT 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATT 1018 Query 1072 GGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATTTCTATAGAATGTGGAA 1131 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1019 GGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATATCTATAGAATGTGGCA 1078 Query 1132 TGCAAAGTTCAGCGCTCGGGTTCTTGCTTGCACAAAAGCATTTCACAAACCCTCTAGTTG 1191 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1079 TGCAAAGTTCAGCGCTCGGGTTCTTACTTGCACAAAAGCATTTCACAAACCCTCTAGTTG 1138 Query 1192 CTGTTCCTTCTGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGT 1251 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 CTGTTCCTTCCGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGT 1198 Query 1252 TCTGGAGAAACCTACCGATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAAATGAAGT 1311 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1199 TCTGGAGAAACCTACCAATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAAATGACGT 1258 Query 1312 AGGAAAGGC 1320 ||||||||| Sbjct 1259 AGGAAAGGC 1267 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56449743090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5