BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26920.1
Length=2260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933013 jgi|Araly1|933013|scaffold_401001.1 2946 0.0
> Ahg933013 jgi|Araly1|933013|scaffold_401001.1
Length=1967
Score = 2946 bits (1595), Expect = 0.0
Identities = 1853/1976 (94%), Gaps = 23/1976 (1%)
Strand=Plus/Plus
Query 147 AGGTGTATTGATGTTCTTTGCAGAGATGTCTCCAGCAACAAAGTCAAAGTCTAAGGATaa 206
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 AGGGGTATTGATGTTCTTTGCAGAGATGTCTCCAGCAACAAAGTCAAAGTCTAAGGATAA 70
Query 207 aaaaaCTGGTAAAGAAGCTCAAAAGGCATCACCAAAGCCTTCACTTTCGGTTAATGGGAA 266
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 71 AAAAACTGGAAAAGAAGCTCAAAAGGCATCACCAAAGCCTACACTTTCGGTTAATGGGAA 130
Query 267 TAGCAGCTTGGCAGCTAGTGGTTATAATCCTCTTTTAGGAACATTTCAAGCTCTTGATTC 326
||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 131 TAGCAGCTTAGCAGCTAGTGCTTATAATCCTCTTCTAGGAACATTTCAAGCTCTCGATTC 190
Query 327 AGTGTCGATAGCTTCTATCTCACCATTACAGTATAGTCGTTTCCGGAGTATAGATGAGGC 386
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 191 AGTCTCGATAGCTTCTATCTCACCGCTACAGTATGGTCGTTTCCGGAGTATAGATGAAGC 250
Query 387 AGATGTAAATGGGATTGAGTCTGATTCAGTTTCGAATAATGGTAGCTGTTCTGGTGAGTC 446
||||||||||||||||||||||||||| ||||| || ||||||||||| || || |||||
Sbjct 251 AGATGTAAATGGGATTGAGTCTGATTCTGTTTCAAACAATGGTAGCTGCTCGGGCGAGTC 310
Query 447 AGAAGATCACAAGGAGAAAACAACTAATCTGCCCCTT-AAGCAGGAGGTGATACCAGGTG 505
||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 311 GGAAGATCACAAGGAGAAAACAACTAGTCTG-CCCTTCAAGCAGGAGGTGATACCAGGTG 369
Query 506 CAGATAATGACAAGCGAGAAAAAGTTCGTCAAAAGAATGAGAGAAAACATCAACGCCAGA 565
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CAGACAATGACAAGCGAGAAAAAGTTCGTCAAAAGAATGAGAGAAAACATCAACGCCAGA 429
Query 566 AGGAGAGGAGGGCTCAGGAGTTGAATGAGAAGTGTAGCACATATCTTATTTCCAGAAAGC 625
| ||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||
Sbjct 430 AAGAGAGGAGGGCTCAGGAGTTGTATGAGAAGTGTAGTACATATCTCATTTCTAGAAAGC 489
Query 626 TTGAAGCCCGTACACAGCAAATTGTGGCAATGGGAATATCTCAAGAGCATGCGACAACGG 685
|||||||||||| ||||||| |||| |||||||| ||||||||||||||||| ||||| |
Sbjct 490 TTGAAGCCCGTATACAGCAACTTGTAGCAATGGGGATATCTCAAGAGCATGCAACAACAG 549
Query 686 CATTAATGATGAATGATGGTAAAGTAGAGGAATCTGTTCATTGGTTGTTTGATAGGCTTG 745
|||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||
Sbjct 550 CATTGATGATGAATGATGGCAAAGTAGAGCAATCTGTTCATTGGTTGTTTGACAGGGGTG 609
Query 746 AGGAAGAAATAGAGAAGCAAAGCATTCAGAGTCCTGGGAATTTGAAAATAGACATAACAG 805
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 610 AGGAAGAAATAGAGAAGCAAAGCGTTCAGAGTCCTGGGAATTTGAAAATAGATATAACAG 669
Query 806 AAGAGCTAGCTAGGATTACAAAAATGGAGTTGCAACTTAAGTGTACAAGGCAGGAAATAG 865
|||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 670 AAGAACTAGCTAGGATTACACAAATGGAGCTACAACTTAAGTGTACAAGGCAGGAAATAG 729
Query 866 AGCGTGCGGTTGTTCAAGCAGAGGGTGATTTGGACAGAGCAGAAGAAGTCTTGAAAGGCA 925
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 730 AGCGTGCGGTTGTTCAAGCAGAGGGTGATTTGGACAGAGCAGAAGAAGTCGTGAAAGGCA 789
Query 926 CAAAGTATGAAGAGTTTTCTGTGCCAGTGAAACAAGAGGAATGTGGTGATCCTCTTACAC 985
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 790 CAAAGTATGAAGAGTTTTCTGTGCCAGTGAAACAAGAAGAATCTAGTGATCCTCTTACAC 849
Query 986 CCAGTAATGGAAAACTTATAGTAGGAATAGGTTATCAGAATTCGGATGTAGAAAGGTCAG 1045
|||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 850 CCAGTAATGGTAAACTTTTAGTAGGAATAGGTTATCAGAATTCAGATGCAGAAAGGCCAG 909
Query 1046 AAATTCCGTCACCTGGCTTACATCCAACAAGAGATGACAAGAACTTTAACTATACAAAAT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AAATTCCGTCACCTGGCTTACATCCAACAAGAGATGACAAGAACTTTAACTATACAAAAT 969
Query 1106 CACCCTCCACAACTGAATCCGTGAACAAAATGTTGGCTCAGCCTATGAAACGACCCGAAC 1165
||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 970 CACCCTCCACAACGGAATCCGTGAACAAAATGATGGCTCAGCCAATGAAACGATCCGAAC 1029
Query 1166 TGAAGTTAGATTGGCCAAAACCTCAGCAATCTGCTGCTTTGGCTGATAAAAGGTGGCCAC 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TGAAGTTAGATTGGCCAAAACCTCAGCAATCTGCTGCTTTGGCTGATAAAAGGTGGCCA- 1088
Query 1226 CAACCACAGGACAGGTTCCTTCGGCTTCTTACTCTTTGCCATCATCGCCATCACCGTCAC 1285
||| || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1089 -AAC-ACGGGACAGGTTCCTTCTGCTTCTTACTCCTTGCCATCATCGCCATCGCCGTCAC 1146
Query 1286 CTCAGCCTGCTGTGAGGGTCGAAGCTCGCTATTTAGCTAGTGGAAATGAATTTAAGAACT 1345
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1147 CTCAGCCTGCTGTGAGGGTTGAAGCTCGATATTTAGCTAGTGGAAATGAATTTAAGAACC 1206
Query 1346 TCcagcagcagcagcagcagcCTGCAAATAGAGAATCAGTCATGGTGATGAGGCAGCGGC 1405
|| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1207 -CC--CAGCAGCAGCAGCAGCCAGCAAATAGAGAATCAATCATGGTGATGAGGCAGCGGC 1263
Query 1406 CACAGGTTGTAATCACAAATCCCGTTCCAACCTCAAGCATGAGTGCACCCCCTACCAGTT 1465
|||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1264 CACAAGTTGTAAGCACAAATCCTGTTCCAACCTCAAGCATGAGCGCACCCCCTACCAGTT 1323
Query 1466 GGCATCCTGCAGC-GAGCATAGAGATAATGAAGTCAAATGGGTTCATGCAAACACATAAT 1524
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GGCATCCTACAGCTG-GCATAGAGATAATGAAGTCAAATGGGTTCATGCAAACACATAAT 1382
Query 1525 ATCCCTAGTGCGCGAAGCCCAAGTCCAAACCATCTGAATCCAAATCAGGTCTACCAGCAA 1584
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1383 ATCCCTAGTGCGCGAAGCCCGAGTCCAAACCATCTGAATCCAAATCAGATCTACCAGCAA 1442
Query 1585 CTTCAGTATCAAAACCAGAAGCGATTCACTAACAACAACCAAGTGGATCCACATGGTAGT 1644
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 CTTCAGTTTCAAAACCAGAAGCGATTCACTAACAACAACCAAGTGGATCCACATGGTAGT 1502
Query 1645 ATGGCCAGAGGGAATGGCGGG-CAATGGACTAGAAATACAGCATCATCTCCACCCATATC 1703
||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 1503 ATGGCCAGAGGGAATGGCGGGTCA-TGGACCAGAAACACAGCATCATCTCCACCCATATC 1561
Query 1704 TGCTGCGTCTTCGCTGGGATTATTCTCTGCGGTTGGTTCAGCTGGAACATCGGGTGCATC 1763
|||||||||||| ||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct 1562 TGCTGCGTCTTCACTGGGATTATTTTCTGTGGTTGGTTCAGCCGGAACATCAGGTGCATC 1621
Query 1764 TTCACCTATAGATTGGATCTCTGGCGGTTCAGTGGACTACACAAACATAGACTGGAGTCT 1823
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1622 CTCACCAATAGATTGGATCTCTGGCGGTTCAGTGGACTACACAAGCATAGACTGGAGTCT 1681
Query 1824 AGATCAAAGTTTATCACAAAATAGTAGAGTCAATGGAAACTGGTCCGGGTTAAAGAGCAG 1883
||||||| ||||||| |||||||||||| || |||||| ||||||||||||||
Sbjct 1682 AGATCAAGGTTTATCCCAAAATAGTAGA---AA------CTGGTCAGGGTTAAAGAGCAG 1732
Query 1884 CAGCCAAATATATGATG-AGAACATGAACCGGTACAGTCTAAATGGTTCCATGGGAGGTA 1942
|||||| |||||||||| | ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1733 CAGCCACATATATGATGCA-AACATGAACAGGTACAGTCCAAATGGTTCCATGGGAGGTA 1791
Query 1943 GACTCAACAACAGCAACGGTGTATCTATGGAGAATTCAGGTGCTGGTGTTATCGTGGAAA 2002
|| |||||||||||||||||||||||||||||||| | |||| | ||||| |||||||||
Sbjct 1792 GAGTCAACAACAGCAACGGTGTATCTATGGAGAATGCGGGTGTTAGTGTTGTCGTGGAAA 1851
Query 2003 CACAACAAGCAGCTACCTCTCCAGATTGGACTTCACCATTTGAAGGAAAAGATATCTTTA 2062
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1852 CACAACAAGCAGCTACCTCTCAAGATTGGACTTCACCATTTGAAGGAAAAGATATATTTA 1911
Query 2063 GCTTGTCTAGACAATATGTGTCTCCTTCTCTGTAAGAGCATAGGAGTTTCATATGG 2118
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1912 GCTTGTCTAGACAATATGTGTCTCCTTCTCTGTAAGAGCAGAGGAGTTACATATGG 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85093607330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5