BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27020.1 Length=1035 Score E Sequences producing significant alignments: (Bits) Value Ahg481580 jgi|Araly1|481580|fgenesh2_kg.4__640__AT2G27020.1 1659 0.0 > Ahg481580 jgi|Araly1|481580|fgenesh2_kg.4__640__AT2G27020.1 Length=1017 Score = 1659 bits (898), Expect = 0.0 Identities = 979/1018 (96%), Gaps = 6/1018 (1%) Strand=Plus/Plus Query 17 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCAGCTTAAATCACTCGACGAAG 76 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCTGCTTAAATCACTCGAAGAAG 60 Query 77 AAGAAATCAGAAAAGAGTCAGAGaaaaaaaaa-aTCAAGGAAGATGAGTAGCATTGGAAC 135 ||||||||| |||||||| | ||||||||| ||| | ||||||||||||||||||||| Sbjct 61 AAGAAATCA-CTAAGAGTCACAAAAAAAAAAAGATCGACGAAGATGAGTAGCATTGGAAC 119 Query 136 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 179 Query 196 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGATGGGAT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGACGGGAT 239 Query 256 TGTTATGGGAGTTGAGAAACTTATTGCATCAAAGATGATGCTACCAGGTTCCAACAGGAG 315 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 240 TGTTATGGGAGTGGAGAAACTTATTGCATCAAAGATGATGTTACCAGGTTCCAACCGGAG 299 Query 316 AATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 375 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 359 Query 376 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 419 Query 436 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATCTGTGTACCCTGTA 495 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 420 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATTTATGTACCCTGTA 479 Query 496 TTGGTGGCTCAGGCCTTTTGGCTGTGGGGTTATTCTTGGAGGTTATGATAGAGATGGACC 555 |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| Sbjct 480 TTGGTGGCTCAGGCCTTTCGGCTGTGGAGTCATTCTTGGAGGTTATGATAGAGATGGACC 539 Query 556 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATACTTTGGTGCGGCCATTGG 615 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATATTTTGGTGCGGCCATTGG 599 Query 616 CAAAGGAAAGCAAGCTGCCAAAACGGAAATTGAGAAATTAAATTTATCTGAGATGACATG 675 ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| Sbjct 600 CAAAGGAAAGCAAGCGGCTAAAACGGAAATTGAGAAATTGAATTTATCTGAGATGACATG 659 Query 676 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAGGA 735 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 660 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAAGA 719 Query 736 CAAGGCTTTTGAATTGGAGATGAGCTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 795 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 720 CAAGGCCTTTGAATTGGAGATGAGTTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 779 Query 796 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 839 Query 856 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCCGTCTTATTGCGTCGTTT-G 914 |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| | Sbjct 840 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCTGTTTTAATGCGTCGTTTTG 899 Query 915 ATGTTTCTTATGTACTCTGAATTGAATTTTGTCT-GGAGGGACAGTTGTTGCAGTTTCGC 973 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 900 -TGTTTCTTATGTACTCTGAATTGAATTTTGTCTTGGAGGGACAGTTGTTGCAGTGTCTT 958 Query 974 ATGAACCATTGGAGTCTTTTATCTT-ATTGCTATCAACAGTTGCTACGATGACTCCTT 1030 ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct 959 ATGAACCATTGGAGTCTTTTATCTTTATTGCTATCAACAGTTGCTACGATAATTCCTT 1016 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38504146170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5