BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27200.1 Length=1876 Score E Sequences producing significant alignments: (Bits) Value Ahg481615 jgi|Araly1|481615|fgenesh2_kg.4__675__AT2G27200.1 2630 0.0 Ahg919585 jgi|Araly1|919585|scaffold_100866.1 1314 0.0 > Ahg481615 jgi|Araly1|481615|fgenesh2_kg.4__675__AT2G27200.1 Length=1808 Score = 2630 bits (1424), Expect = 0.0 Identities = 1643/1745 (94%), Gaps = 30/1745 (2%) Strand=Plus/Plus Query 12 AAGGTTTCA-CCGGAGAAGAAAATGGGGAAGAACGAGAAAACATCTCTAGGTCGAGCCTT 70 ||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 AAGGTCTCAGCC-GAGAAGAAAATGGGGAAGAACGAGAAAACATCTCTAGGTCGAGCTTT 59 Query 71 AGTGAAGCACCATAACCATATGATCCAGGAAACCAAGGAAAAAGGCAAATCCTACAAAGA 130 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 60 AGTGAAGCACCATAACCATATGATCCAAGAAACCAAGGAAAAAGGCAAATCCTACAAAGA 119 Query 131 TCAACACAAGAAGGTTCTAGAATCCGTGACCGAAGTCAGCGACATCGATGCCATCATCGA 190 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 120 TCAACACAAGAAGGTTCTAGAATCTGTAACCGAAGTCAGCGACATCGATGCCATCATCGA 179 Query 191 ACAAGCCGAAGAAGCTGAACGTCTTTTCGCGATTCATCACGATTCCGCAACTCCTGTTCC 250 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 180 ACAAGCCGAGGAAGCTGAACGGCTTTTCGCGATTCATCACGATTCCGCAACGCCTGTTCC 239 Query 251 TATCAATATGGATACAGGTTCGAGTTCGAGTGGCATAACAGCTAAAGAATGGAAAGAGCA 310 |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 240 TATCAATATGGACACAGGTTCGAGTTCAAGTGGTATAACAGCTAAAGAATGGAAAGACCA 299 Query 311 AAGGATGAGAGAAGAGGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGTAGACCTCATTG 370 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 AAGGATGAGAGAAGAGGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGAAGACCTCATTG 359 Query 371 GACACCTAAAATGAATGTGGAGA-AACTTGATGCTAATGAAAAACAAGCTTTTCTCACTT 429 ||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||| Sbjct 360 GACACCTAAAATGAATGTGGA-ACAACTTGATGCTAATGAAAGACAAGCTTTTCTTACTT 418 Query 430 GGCGACGGAAACTTGCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGA 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGCGACGGAAACTTGCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGA 478 Query 490 AGAACCTTGATATCTGGAGACAACTTTGGCGAGTGCTTGAACGTAGTGATTTGATTGTTA 549 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 479 AGAACCTTGACATCTGGAGACAACTTTGGCGAGTGCTTGAACGAAGTGATTTGATTGTTA 538 Query 550 TGGTTGTTGATGCTAGAGATCCTCTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCAC 609 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 539 TGGTTGTTGATGCTAGAGATCCTCTGTTTTACCGTTGTCCTGATCTTGAGGCATATGCAC 598 Query 610 AAGAAATTGATGAGCATaaaaaaaCAATGCTTCTGGTCAACAAGGCAGATCTGTTACCTT 669 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 599 AAGAAATTGATGAGCATAAAAAAACAATGCTTCTGGTCAACAAGGCGGATTTGTTACCTT 658 Query 670 CTTATGTCAGGGAGAAATGGGCGGAATACTTCTCCCGCAACAATATTCTGTTTGTCTTCT 729 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 659 CTTATGTCAGGGAGAAATGGGCGGAATACTTCTCCCGCAACAATATTCTGTTCGTCTTCT 718 Query 730 GGTCAGCCAAAGCTGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAG 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GGTCAGCCAAAGCTGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAG 778 Query 790 CACCTGATACCACACAGAAGACAGATAACCCAGCTGTGAAAGTATATGGAAGGGACGACC 849 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 779 CACCTGATACCTCTCAGAAGACAGATAACCCAGCTGTGAAAGTATATGGAAGGGATGAGC 838 Query 850 TTTTGGATCGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAG 909 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTTTGGCTCGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAG 898 Query 910 TTTCCGCAACTTCTACTGAATCACACTGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACC 969 ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 899 TTTCCGCAACTGCTGCTGAATCACACCGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACC 958 Query 970 CGAATGTGGGGAAGAGTTCGACAATCAACGCATTGGTAGGTCAGAAGCGAACTGGTGTCA 1029 |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 959 CGAATGTGGGAAAGAGTTCGACAATCAACGCGTTGGTAGGTCAGAAGCGAACAGGTGTCA 1018 Query 1030 CATCTACCCCCGGGAAAACAAAGCATTTCCAGACATTGATAATCTCTGAGGATCTAATGC 1089 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1019 CATCTACCCCCGGGAAAACGAAGCATTTCCAGACATTGATAATCTCCGAGGATCTAATGC 1078 Query 1090 TCTGCGATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGGTTG 1149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1079 TCTGCGATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGATTG 1138 Query 1150 CTTCTGGAGTTCTTCCAATAGACCGGATGACCGAGCACCTTGAAGCTATTAAGGTTGTGG 1209 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1139 CTTCTGGAGTTCTTCCAATAGACCGGATGACCGAGCACCGTGAAGCTATTAAGGTTGTGG 1198 Query 1210 CTGAACTTGTTCCTCGACATGCCATTGAGGATGTGTACAACATCTCTCTACCTAAACCCA 1269 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CTGAACGTGTTCCTCGGCATGCCATTGAGGATGTGTACAACATCTCTCTACCTAAACCCA 1258 Query 1270 AATCCTATGAACCTCAGTCCCGCCCACCTCTTGCCTCAGAGCTTCTAAGAACTTACTGCC 1329 || |||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1259 AAAGCTATGAGCCTCAGTCACGCCCACCACTTGCATCAGAGCTTCTAAGAACTTACTGCC 1318 Query 1330 TCTCTCGTGGTTATGTTGCCTCTAGTGGACTACCTGATGAGACTAGAGCAGCTAGGCAGA 1389 | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1319 TTTCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAGACAAGAGCAGCTAGGCAGA 1378 Query 1390 TTCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGATAACCC 1449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1379 TTCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGATAACAC 1438 Query 1450 GAGATGATGAAAACGAGACAGCGGATGACACTTTGGGAGCCGAAACAAGAGAAGGTTCAC 1509 |||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||| Sbjct 1439 GAGATGATGAAAACGAGACAGCGGATGATAATATGGGAGCCGAAACACGAGAAGGTTCAC 1498 Query 1510 AGACTGAGAAGAAAGGTGAAGAAGCT-C---C-TAG-TCTTGGTCTTGATCAAGTTCTAG 1563 || ||||| || |||| |||||||| | | | | ||||||||||||||||||||||| Sbjct 1499 AGCCTGAGGAGGAAGGCAAAGAAGCTACTGGCCTTGGTCTTGGTCTTGATCAAGTTCTAG 1558 Query 1564 ATGATCTTAGCTCGTTTGATCTTGCAAATGGACTTGTGTCTTCCAAAACGAAACAGCACA 1623 ||||||| |||||||||||||||||||||||| ||| |||| ||||| ||||||||||| Sbjct 1559 ATGATCTGAGCTCGTTTGATCTTGCAAATGGAATTGGGTCTAACAAAAAGAAACAGCACA 1618 Query 1624 AGAAGTCACATAGGAAACAATGATTCGGTCTTGATGGAACGCCAATTCTGAGAGTTTTCC 1683 ||||||||||||| |||| ||||||||||| | | | | | ||||||| ||||| Sbjct 1619 AGAAGTCACATAGAAAACCATGATTCGGTC--G------C-C-AGTGCTGAGAGGTTTCC 1668 Query 1684 TGAAA-C-C---G-AT----CAACAAATGCTCGAATATATGATACAGTTGTGGATTTTTC 1733 |||| | | | || ||||||||||| |||||||||||||||||||||||||||| Sbjct 1669 AGAAATCACAATGCATTGAACAACAAATGCTGGAATATATGATACAGTTGTGGATTTTTC 1728 Query 1734 TTATT 1738 ||||| Sbjct 1729 TTATT 1733 > Ahg919585 jgi|Araly1|919585|scaffold_100866.1 Length=1794 Score = 1314 bits (711), Expect = 0.0 Identities = 1213/1451 (84%), Gaps = 52/1451 (4%) Strand=Plus/Plus Query 33 ATGGGGAAGAACGAGAAA-ACATC-TCTAGGTCGAGC-CTTAGTGAAGCACCATAACCAT 89 |||||||||| ||| ||| || || | |||| ||| | | | ||||||||||| |||||| Sbjct 23 ATGGGGAAGAGCGA-AAAGACGTCGT-TAGGGCGATCAC-TGGTGAAGCACCACAACCAT 79 Query 90 ATGATCCAGGAAACCAAGGAAAAAGGCAAATCCTACAAAG-ATCAACACAAGAAGGTTCT 148 ||||| || ||| |||| || |||||||| | |||| ||| ||| || ||||| ||||| Sbjct 80 ATGATTCAAGAATCCAAAGACAAAGGCAAGTACTAC-AAGAATCTTCAGAAGAAAGTTCT 138 Query 149 AGAATCCGTGACCGAAGTCAGCGACATCGATGCCATCATCGAACAAGCCGAAGAAGCTGA 208 |||||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| Sbjct 139 CGAATCCGTGACCGAGGTCAGCGACATCGACGCCATCATTGAGCAAGCCGAGGAGGCTGA 198 Query 209 ACGTCTTTTCGCGATTCATCACGA-TTCCGCAACTCCTGT-TCCTATCAATATGGATACA 266 ||||||| | | ||| ||||| | ||| | || ||| | ||| |||||| | || ||| Sbjct 199 GCGTCTTTACACCATTAATCAC-AGCTCCTCCACACCTTTGTCC-ATCAATCTAGACACA 256 Query 267 GGTTCGAGTTCGAGTGGCATAACAGCTAAAGAATGGAAAGAGCAA-AGGATGAGAGAAGA 325 ||| || || |||| ||| ||||| |||| |||| ||||||| | || || ||| || Sbjct 257 AATTCCAGCTCAAGTGTTATAGCAGCTGAAGAGTGGAGAGAGCAACA-GAAGATAGAGGA 315 Query 326 GGCTTTACATGCTAGTAGTCTTCAAGTTCCTCGTAGACCTCATTGGACACCTAAAATG-A 384 ||||||||| || |||||||||||||| ||||| ||||||| |||||||| ||||| Sbjct 316 GGCTTTACACGCCAGTAGTCTTCAAGTGCCTCGAAGACCTCCGTGGACACCCGAAATGTC 375 Query 385 ATGT-GGAGAAACTTGATGCTAATGAAAAACAAGCTTTTCTCACTTGGCGACGGAAACTT 443 | || | || |||| |||||||||||||||||||||||||| | |||||| |||| ||| Sbjct 376 A-GTAGAAG-AACTAGATGCTAATGAAAAACAAGCTTTTCTAAATTGGCGCCGGATGCTT 433 Query 444 GCGAGCCTCGAGGAAAATGAAAAGCTTGTGTTGACACCATTCGAGAAGAACCTTGATATC 503 | |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 434 GTGAGCCTTGAGGAAAATGAAAAGCTTGTGTTGACTCCATTCGAAAAGAACCTTGACATC 493 Query 504 TGGAGACAACTTTGGCGAGTGCTTGAACGTAGTGATTTGATTGTTATGGTTGTTGATGCT 563 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 494 TGGAGACAGCTTTGGCGAGTGCTTGAACGCAGTGATTTGATTGTTATGGTTGTTGATGCT 553 Query 564 AGAGATCCTCTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCACAAGAAATTGATGAG 623 |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 554 AGAGATCCACTGTTTTACCGCTGCCCTGATCTTGAGGCATATGCTCGAGAAATTGATGAA 613 Query 624 CATaaaaaaaCAATGCTTCTGGTCAACAAGGCAGATCTGTTACCTTCTTATGTCAGGGAG 683 ||||| |||| ||||||||| || |||||||| ||||| |||||| || ||||||||||| Sbjct 614 CATAAGAAAATAATGCTTCTAGTTAACAAGGCGGATCTTTTACCTACTGATGTCAGGGAG 673 Query 684 AAATGGGCGGAATACTTCTC-CCGCAACAATATTCTGTTTGTCTTCTGGTCAGCCAAAGC 742 |||||||| || || ||| | || ||||| ||||||||||| ||||||||||||| ||| Sbjct 674 AAATGGGCAGAGTATTTC-CGCCTTAACAACATTCTGTTTGTTTTCTGGTCAGCCATAGC 732 Query 743 TGCTACGGCTACCCTAGAAGGTAAACCCCTGAAAGAACAGTGGAGAGCA-CCTGATACCA 801 |||||| |||||||||||||||||| | ||||||| || |||||| || || |||| | Sbjct 733 TGCTACAGCTACCCTAGAAGGTAAAGTCTTGAAAGAGCAATGGAGA-CAACCCGATAACT 791 Query 802 CACAGAAGACAGATAACCCAG-C-TG-TGAAAGTATATGGAAGGGACGACCTTTTG-GAT 857 |||||||||||| | |||| | | ||| ||||||| ||||||| || || | | Sbjct 792 TTCAGAAGACAGATGATCCAGACATTATGA---TATATGGCCGGGACGAGCTGCTGAG-T 847 Query 858 CGATTAAAACTTGAGGCTCTAGAGATAGTAAAAATGAGGAAATCTAGAGGAGTTTCCGCA 917 || ||| || |||||||||||||||| || ||| | ||||| ||||||| || || | | Sbjct 848 CGTTTAGAATTTGAGGCTCTAGAGATTGTCAAAGTAAGGAATTCTAGAGCAGCATC-G-A 905 Query 918 ACTTCTACTGAATCA-CA-CTGCGAACAAGTTGTGGTTGGCTTTGTTGGGTACCCGAATG 975 || | ||||| | || | | || |||| |||||||| |||||||||||||| |||| Sbjct 906 -CTG-T--TGAAT-ATCAAC-GTGATCAAGCCGTGGTTGGATTTGTTGGGTACCCAAATG 959 Query 976 TGGGGAAGAGTTCGACAATCAACGCATTGGTAGGTCAGAAGCGAACTGGTGTCACATCTA 1035 | || |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||| Sbjct 960 TTGGAAAGAGTTCAACAATCAACGCATTGGTGGGTCAGAAGCGAACAGGTGTCACCTCTA 1019 Query 1036 CCCCCGGGAAAACAAAGCATTTCCAGACAT-TGATAATCTCTGAGGATCTAATGCTCTGC 1094 |||| || |||||||||||||||||||| | |||||||||||||||| || ||||| ||| Sbjct 1020 CCCCAGGAAAAACAAAGCATTTCCAGAC-TCTGATAATCTCTGAGGAGCTTATGCTATGC 1078 Query 1095 GATTGCCCTGGTTTAGTCTTCCCTTCATTCTCAAGCTCAAGATATGAAATGGTTGCTTCT 1154 |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| Sbjct 1079 GATTGCCCTGGTTTAGTCTTCCCTTCGTTCTCAAGCTCGAGATATGAAATGATTGCTTCT 1138 Query 1155 GGAGTTCTTCCAATAGACCGGATGACCGAGCACCTTGAAGCTATTAAGGTTGTGGCTGAA 1214 || || ||||| || ||| ||||||| ||||||| |||||||||| |||| |||||||| Sbjct 1139 GGTGTCCTTCCGATTGACAGGATGACGGAGCACCGTGAAGCTATTCAGGTGGTGGCTGA- 1197 Query 1215 CTTG-TTCCTCGACATGCCATTGAG-GATGTGTACAACATCTCTCTACCTAAACCCAAAT 1272 | | ||||||||| || ||||||| | ||| |||||||| ||||| |||||||||||| Sbjct 1198 CAAGGTTCCTCGACGTGTCATTGAGAG-TGTATACAACATTTCTCTTCCTAAACCCAAAA 1256 Query 1273 CCTATGAACCTCAGTCCCGCCCACCTCTTGCCT-CAGAGCTTCTAAGAACTTACTGC-CT 1330 ||||||| | |||||||||||| |||| ||| | |||| ||| |||||| |||||| || Sbjct 1257 CCTATGAGCGTCAGTCCCGCCCGCCTCATGC-TGCAGAACTTTTAAGAAGTTACTGTGCT 1315 Query 1331 CTCTCGTGGTTATGTTGCCTCTAGTGGACTACCTGATGAGACTAGAGCAGCTAGGCAGAT 1390 |||||||| ||||||||||||||||||||||||||||| || | ||| ||||||| ||| Sbjct 1316 -TCTCGTGGCTATGTTGCCTCTAGTGGACTACCTGATGAAACGAAAGCTGCTAGGCTGAT 1374 Query 1391 TCTGAAAGATTACATTGAAGGTAAGCTTCCACATTTTGCAATGCCTCCAGAGA-TAACCC 1449 ||||||||||||||||| ||||||||| || |||| ||||||||| || | || | || | Sbjct 1375 TCTGAAAGATTACATTGGAGGTAAGCTGCCGCATTATGCAATGCCACCTG-GAATGACAC 1433 Query 1450 GAGATGATGAA 1460 || ||||||| Sbjct 1434 AAGGTGATGAA 1444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70466953250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5