BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27228.1
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481620 jgi|Araly1|481620|fgenesh2_kg.4__680__AT2G27230.2 3731 0.0
> Ahg481620 jgi|Araly1|481620|fgenesh2_kg.4__680__AT2G27230.2
Length=2646
Score = 3731 bits (2020), Expect = 0.0
Identities = 2442/2632 (93%), Gaps = 84/2632 (3%)
Strand=Plus/Plus
Query 99 TTTTATCAATGGCTGGTGTTACTGGAATCTTAAAGCTTGAAGCTTGGAGCATCTTGTGAA 158
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTTTATCGATGGCTGGTATTACTGGAATCTTAAAGCTTGAAGCTTGGAGCATCTTGTGAA 115
Query 159 GAAGATTAACTAGTTTCTTGT-Atttttcttttctggggttttgag-tttttttttCTCT 216
|||| ||| |||||||| | |||||||||||| || ||||||| |||||||||||||
Sbjct 116 CAAGA--AAC-AGTTTCTT-TCGTTTTTCTTTTCT-GGTTTTTGAGTTTTTTTTTTCTCT 170
Query 217 TCCTTATTACCGGAAGTAATGGCATGTCGGAGTATGATCGCTTTTAGTTTAGATCCTGAA 276
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCTTTATTACCGGAAGTAATGGCATGTCGGAGTATGATCGCTTTTAGTTTAGATCCTGAA 230
Query 277 AGAAAACAAAGTGGAGGACTTAGGACAAAACAAGCTGGAAGAGGATCTTGCCGTGGAAGT 336
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 231 AGAAAACAAAGTGGAGGACTTAGAACAAAACAAGCTGGAAGAGGATCTTGCCGTGGAAGT 290
Query 337 TAGTCTTTGTTCAAATCCA--TT--T-TC---C-TCTTAAAGAATTTTGAAATTGCACTG 387
||||||||||||||||||| || | || | ||||||||||||||||||||||||||
Sbjct 291 TAGTCTTTGTTCAAATCCATTTTCCTCTCAATCTTCTTAAAGAATTTTGAAATTGCACTG 350
Query 388 TTGCAAGTGAAAAAGTTTGTTCTTGTTGGAGCTTaaagaagagagaagagaaagagaaaa 447
||||||||||||||| |||||||||||||||||| || || |||||||||
Sbjct 351 TTGCAAGTGAAAAAGATTGTTCTTGTTGGAGCTT-----------AA-AG-AAGAGAAAA 397
Query 448 gCTATGGGAGTTTTACTAAGAGAAGCTTTAAGGTCTATGTGTGTTAATAATCAATGGTCT 507
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 398 GCTATGGGAGTTTTACTAAGAGAAGCTTTGAGGTCTATGTGTGTTAATAATCAATGGTCT 457
Query 508 TATGCTGTTTTCTGGAAAATTGGCTGTCAAAATTCTAGCTTGTTGATTTGGGAGGAATGT 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TATGCTGTTTTCTGGAAAATTGGCTGTCAAAATTCTAGCTTGTTGATTTGGGAGGAATGC 517
Query 568 TACAATGAAACCGAATCGAGCTCGAATCCTAGAAGACTTTGTGGACTTGGTGTTGATACA 627
|| |||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 518 TATAATGAAACTGCATCGAGCTCGAATCCTCGAAGACTTTGTGGACTCGGTGTTGATACA 577
Query 628 CAAGGGAATGAGAAAGTTCAGTTGCTTACAAACCGAATGATGTTGAACAATCGAATCATT 687
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 578 CAAGGGAATGAGAAAGTTCAGTTGCTTACGAACCGAATGATGTTGAACAATCGAATCATT 637
Query 688 TTGGTAGGTGAAGGTCTAGTTGGCCGAGCTGCATTTACTGGACATCATCAATGGATTCTA 747
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTGGTTGGTGAAGGACTAGTTGGCCGAGCTGCATTTACTGGACATCATCAATGGATTCTA 697
Query 748 GCTAACAGTTTTAACCGCGATGTTCATCCACCCGAGGTTATTAATGAGATGCTTCTCCAA 807
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 698 GCTAATAGTTTCAACCGCGACGTTCATCCACCCGAGGTTATTAATGAGATGCTTCTCCAA 757
Query 808 TTCTCTGCTGGTATTCAGACTGTTGCAGTTTTTCCGGTTGTTCCTCACGGTGTTGTTCAG 867
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 758 TTCTCTGCTGGTATTCAGACTGTTGCAGTTTTCCCGGTTGTTCCTCACGGTGTTGTTCAA 817
Query 868 CTCGGTTCCTCTCTGCCTATTATGGAGAACTTGGGGTTTGTGAATGACGTGAAGGGTCTT 927
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 818 CTCGGTTCCTCTCTGCCTATTATGGAGAATTTGGGGTTTGTGAATGACGTGAAGGGTCTT 877
Query 928 ATCCTGCAGCTCGGATGTGTTCCGGGGGCTCTCTTATCTGAAAACTACAGAACATATGAA 987
|||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 878 ATCCTGCAACTCGGATGTGTTCCCGGAGCGCTCTTATCTGAAAACTACAGAACATATGAA 937
Query 988 CCTGCTGCTGATTTTATTGGAGTGCCAGTGTCTCGGATAATACCTTCTCAAGGACATAAG 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 938 CCTGCTGCTGATTTTATTGGAGTGCCAGTGTCTCGGATAATACCTTCTCAAGGACACAAG 997
Query 1048 ATCCTCCAATCTTCGGCTTTCGTAGCTGAAACTAGCAAACAACATTTCAACTCCACTGGA 1107
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 998 ATCCTCCAATCTTCGGCTTTCGTAGCTGAAACTAGCAAACAACACTTCAACTCTACTGGA 1057
Query 1108 TCATCAG---ATC------ATCAAATGGTTGAAGAATCTCCCTGTAATCTTGTGGATGAA 1158
||||||| ||| ||||||||||||||||| |||| |||||||| |||||||||
Sbjct 1058 TCATCAGATCATCAAAATGATCAAATGGTTGAAGAAGCTCCGTGTAATCTCGTGGATGAA 1117
Query 1159 C--AT---G-AAGGAGGATGGCAAAGCACAACAGGATTTCTAACAGCTGGAGAAGTTGCA 1212
| || | ||||||||||||||| |||||| || |||||||||||||| |||||||||
Sbjct 1118 CAGATCAAGCAAGGAGGATGGCAAAACACAACGGGTTTTCTAACAGCTGGGGAAGTTGCA 1177
Query 1213 GTACCTTCAAATCCAGATGCGTGGCTGAATCAAAACTTCTCTTGTATGTCTAATGTGGAT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GTACCTTCAAATCCAGATGCGTGGCTGAATCAAAACTTCTCTTGTATGTCTAATGTGGAT 1237
Query 1273 GCAGCAGAGCAGCAACAAATCCCATGTGAAGACATCAGTTCGAAACGCTCGCTTGGAAGC 1332
| ||| || |||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 1238 GGAGC--AG-AGCAACAAATCCCATGCGAAGACATCAGTTCCAAACACTCGCTTGGAAGC 1294
Query 1333 GACGACTTGTTTGATATGTTGGGTTTGGATGATAAGAACAAAGGTTGTGACAACAGTTGG 1392
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 GATGACTTGTTTGATATGTTGGGTTTGGATGATAAGAACAAAGGTTGTGACAACAGTTGG 1354
Query 1393 GGAGTTTCACAGATGAGAACAGAAGTACTCACTAGAGAGTTATCCGACTTTCGGATCATT 1452
|| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1355 GGTGTTTCGCAGATGAGAACGGAAGTACTCACTAGGGAGTTATCCGACTTTCGGATCATT 1414
Query 1453 CAAGAAATGGACCCTGAGTTCGGTTCTTCGGGGTATGAACTTTCAGGAACAGATCATCTG 1512
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CAAGATATGGACCCTGAGTTTGGTTCTTCGGGGTATGAACTTTCAGGAACAGATCATCTG 1474
Query 1513 TTAGATGCCGTGGTCTCGGGTGCTTGCTCCTCCACAAAGCAGATCTCAGACGAAACTTCC 1572
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1475 TTAGATGCCGTGGTCTCGGGTGCTTGCTCCTCCACAAAGCAGATCTCGGACGAAACATCT 1534
Query 1573 GAGTCCTGCAAAACCACCTTGACTAAAGTTAGTAATTCTTCGGTTACCACGCCGTCTCAC 1632
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1535 GAGTCCTGCAAAACCACTTTGACTAAAGTTAGTAATTCTTCGGTTACCACGCCATCTCAC 1594
Query 1633 AGTAGCCCTCAAGGTAGCCAGTTATTTGAGAAGA-AACATGGGCAACCATTGGGGCCATC 1691
|||||||||||||||| ||||||||||||||| | |||| ||||||||| ||||||||||
Sbjct 1595 AGTAGCCCTCAAGGTAACCAGTTATTTGAGAA-ACAACACGGGCAACCAGTGGGGCCATC 1653
Query 1692 ATCGGTCTACGGGTCTCAGATAAGTTCTTGGGTTGAACAAGCGCACAGCTTGAAGCGTGA 1751
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1654 ATCGGTCTACGGGTCTCAGATCAGTTCTTGGGTTGAACAAGCACACAGCTTGAAGCGCGA 1713
Query 1752 GGGCAGTCCAAGGATGGTG---AAC---AAGAATGAAACTGCAAAACCGGCTAATAACCG 1805
|||||||||||||||| || ||| ||||| ||||||||||||||||||||||| ||
Sbjct 1714 GGGCAGTCCAAGGATGATGAATAACAATAAGAACGAAACTGCAAAACCGGCTAATAATCG 1773
Query 1806 GAAAAGGCTTAAACCAGGAGAGAACCCAAGACCAAGGCCTAAAGATCGCCAAATGATCCA 1865
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1774 TAAAAGACTTAAACCAGGAGAGAACCCAAGACCAAGGCCTAAAGATCGCCAGATGATCCA 1833
Query 1866 AGATCGTGTCAAAGAGCTGCGTGAAATAATACCAAACGGTGCAAAATGTAGCATTGATGC 1925
|||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1834 AGATCGTGTCAAGGAGTTGCGTGAAATCATACCAAACGGAGCAAAATGTAGCATTGATGC 1893
Query 1926 ACTCCTTGAACGTACAATCAAGCACATGCTCTTCTTGCAAAATGTCTCCAAGCATTCTGA 1985
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1894 ACTCCTGGAACGTACAATCAAGCACATGCTCTTCTTGCAAAATGTCTCGAAGCACTCTGA 1953
Query 1986 TAAGCTGAAGCAAACCGGGGAATCCAAGATTATGAAAGAGGACGGTGGAGGAGCAACATG 2045
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 TAAGCTGAAGCAAACTGGGGAATCCAAGATTATGAAAGAGGACGGTGGAGGAGCAACATG 2013
Query 2046 GGCTTTCGAAGTAGGGTCAAAGTCTATGGTGTGTCCAATTGTCGTAGAAGATATAAACCC 2105
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2014 GGCTTTCGAAGTAGGGTCAAAGTCTATGGTGTGTCCAATTGTCGTAGAGGATATAAACCC 2073
Query 2106 GCCTCGCATTTTCCAAGTCGAGATGTTATGCGAGCAACGAGGATTCTTTCTAGAAATCGC 2165
|||||||||||||||||| |||||||| || || |||||||||||||| |||||||||||
Sbjct 2074 GCCTCGCATTTTCCAAGTTGAGATGTTGTGTGAACAACGAGGATTCTTCCTAGAAATCGC 2133
Query 2166 AGATTGGATCAGAAGCTTAGGGTTAACGATCTTGAAGGGAGTCATCGAAACTCGAGTAGA 2225
||||||||||| |||||||| | ||||| |||||||| ||||||||||||||| | ||
Sbjct 2134 GGATTGGATCAGGAGCTTAGGAATGACGATATTGAAGGGTGTCATCGAAACTCGACTTGA 2193
Query 2226 CAAGATTTGGGCTCGCTTCACTGTTGAGGCGAGTCGCGACGTGACGAGGATGGAAATATT 2285
|||||| ||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||
Sbjct 2194 CAAGATATGGGCTCGCTTCACTGTTGAGGCGAATCGAGACATGACGAGAATGGAAATATT 2253
Query 2286 CATGCAACTAGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTAT 2345
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2254 CATGCAACTGGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTAT 2313
Query 2346 TTTGGATGGTATCAAAGCTACAATGCCTTTACCGGTTACTGGTGGCTGTTCAATGTAATG 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2314 TTTGGATGGTATCAAAGCTACAATGCCTTTACCGGTTACTGGTGGCTGTTCAATGTAATG 2373
Query 2406 ACACAAATTATTGACCGTACCGGATTGCTCCGGTTT-AATAAACCGGGCTGGTTAAAAGC 2464
||||||||| || ||||||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 2374 ACACAAATTGTTAACCGTACCGGATTGCTCCGGTTTTAATAAACCGGTATCATTAAA-GC 2432
Query 2465 TTGATTCATATAGAGGTTACGAGCGGACCGCTCTCAAGGATTTTAGGCTCGCTATGACTA 2524
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2433 TTGATTCATATAGAGGTTACGAGCGGACCGCTCTCAAGGATTT-AGGCTCGCTATGACTA 2491
Query 2525 ACT-AAAAAGTCAGTCTAAACCAGAGATGATGATTTTTAAGTGTGtttttttttCTCAAC 2583
||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 2492 ACTTAAAAAGTCAGTCTAAAACAGAGATGATGATTTTTAAGTGT-TTTTTTTTT-T---- 2545
Query 2584 TTTAtgttttgtacattagttgcgaattttcatttgtgtggaattttt--t----aa-tt 2636
| || |||||| | ||||||||||||||||||||||||||| | || ||
Sbjct 2546 T----GT-----ACATTA-T-GCGAATTTTCATTTGTGTGGAATTTTTACTTTTTAAATT 2594
Query 2637 ttaattcagttttggagtt-gtaaaaaatttagttaaattgtttaaaattat 2687
|||||||||||||||| || |||||| |||||||||||||| |||||||||
Sbjct 2595 TTAATTCAGTTTTGGACTTTGTAAAATTTTTAGTTAAATTGTCTAAAATTAT 2646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102081856600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5