BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27350.5 Length=2287 Score E Sequences producing significant alignments: (Bits) Value Ahg481634 jgi|Araly1|481634|fgenesh2_kg.4__694__AT2G27350.2 2806 0.0 Ahg359343 jgi|Araly1|359343|fgenesh1_pg.C_scaffold_128000002 597 1e-169 > Ahg481634 jgi|Araly1|481634|fgenesh2_kg.4__694__AT2G27350.2 Length=1883 Score = 2806 bits (1519), Expect = 0.0 Identities = 1723/1816 (95%), Gaps = 36/1816 (2%) Strand=Plus/Plus Query 372 GGGGAATGCAGAGAACGTTTTGCTGCGAGGTGGAGAACGGTTGGAAGGAATCCCTCTCTC 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 GGGGAATGCAGAGAACGTTTTGCTGCGAGGTGGAGAACGGTTGGAAGGAATCCCTCTCTC 130 Query 432 AAGGGATTGTTATCGTAGGTCCTAAAGCAAGAACTAGGGACAAACCTTGGGATATTCTCT 491 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| Sbjct 131 AAGGGATTGTTATCGTA-GTCCTAAAGCAAGAACCAGGGACAAACCTTGGGATAATCTCT 189 Query 492 AATCTTTCATC-TTTGATTAGGACAGCAAAGACTTAAGAAGCAGCATGACTCGGATTTTG 550 ||||||||| | ||||||||||| | ||| ||||||||||||||||||||||||||||| Sbjct 190 AATCTTTCA-CATTTGATTAGGA-A--AAATACTTAAGAAGCAGCATGACTCGGATTTTG 245 Query 551 GTTCAAAGAGGTTCATCAGGCAGTTCTTCCAACTCTAGCCGTCCTTCTTCCTCATCTAGT 610 |||||| ||||||||||||| |||||||||||||| ||||| | | | | Sbjct 246 GTTCAACGAGGTTCATCAGGAAGTTCTTCCAACTCGAGCCG---------C-C--C---T 290 Query 611 TCTTCCTCGGGATCAGAAACACAGATAAACAATAATATTCCGGTTCCTCCTGTTACTATA 670 |||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||| Sbjct 291 TCTTCCTCGGGAACAGAACCACAGATAAACAATACTATTCAGGTTCCTCCTGTTACTATA 350 Query 671 GATGAAGAAATTACGGATGAGAAACAAGAAGAGGTTACTGTAGTTGAAAAAGCAGAGTGT 730 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 351 GATGAAGAAATTACGGATGAGAAACAAGACGAGGTTACTGTAGTTGAAAAAGTAGAGTGT 410 Query 731 TCTGATGCTAAAG-ATGTAGCTGTGGACAGTGA-TGAACCTGCGGATAGAGAAGATGATG 788 ||||||||| ||| ||||||||||||||| | | |||||||| ||||||||||||||||| Sbjct 411 TCTGATGCT-AAGAATGTAGCTGTGGACA-TTAGTGAACCTGTGGATAGAGAAGATGATG 468 Query 789 AAGGGTTGGTAGTTGCAGAAAATGTTCATGTTCAAAGTGAAGGTATAGATTGTGATTCTC 848 |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 469 AAGGATTGGTAGTTTCAGAAAATGTTCATGTTGAAAGTGAAGGTATAGATTGTGATTCTC 528 Query 849 CAGTTAGCGGTGGCAGTAACTCTGATTCACCACCCGTACCAGCTCCACCACCAAAACCTT 908 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 529 CAGTTAGTGGTGGCAGTAACCCTGATTCACCACCCGTACCAGCTCCACCACCAAAACCTT 588 Query 909 CTTCCACTGTCAATCCTGGTAGTAACAGATCGGTTTTGGGAAGTTTTGGCGCTTTACGAA 968 |||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||| Sbjct 589 CTTCGACTGTCAATCCTGGGAATAACAGATCGGTCTTGGGAAGTTTTGGCGCTTTACGAA 648 Query 969 TTGGACCAACACGAAGAGCTGCTGGGCCTCGCTCTCTTGTTTCCAGTAGGAGTTCGCCAA 1028 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 649 TTGGACCAACACGAAGAGGTTCTGGGCCTCGCTCTCTTGTTTCCAGTAGGAGTTCGCCAA 708 Query 1029 CTGGATCACATCCTTCTTCTCCAAGATCACACAGTGAGAACGAGGGCTATAATAGTTCTG 1088 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 709 CTGGATCGCATCCTTCTTCTCCAAGATCACACAGTGAGAACGAGGGCTATAACAGTTCTG 768 Query 1089 ATGAGCATATGCCATGCTATGTGCCCTCTCATCCTGGCTCTGGCTTGGAAAGAGAACACC 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 ATGAGCATATGCCATGCTATGTGCCCTCTCATCCTGGCTCTGGCTTGGAAAGAGAACACC 828 Query 1149 AGTTTGAAGCAGAGATTAGATATTCAAAAGGATTTGAAATTAGGCGGATGTTGGAAGATG 1208 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 829 AGTTTGAAGCAGAGATTAGAGATTCAAAAGGCTTTGAAATTAGGCGGATGTTGGAAGATG 888 Query 1209 GAAATTGTCTTTTTCGAGCTGTTGCAGATCAAGTATATGGGGACTCAGAGGCATATGACT 1268 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 889 GAAATTGTCTTTTTCGGGCCGTTGCAGATCAAGTATATGGGGACTCAGAGGCATATGACT 948 Query 1269 TGGCTAGACAAATGTGCATGGATTACATGGAACAAGAGAGGGATCACTTTTCTCAGTTCA 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 TGGCTAGACAAATGTGCATGGATTACATGGAACAAGAGAGGGATCACTTTTCTCAGTTCA 1008 Query 1329 TAACCGAAGGTTTTACCTCTTACTTGAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACA 1388 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 TAACCGAAGGTTTTACTTCTTACTTGAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACA 1068 Query 1389 ACGTAGAGATCCAAGCTTTAGCAGAAATGTACAATAGGCCAATCCACATTTACTCATATA 1448 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1069 ACGTAGAGATCCAAGCTTTAGCAGAAATGTATAATAGGCCAATCCACATTTACTCATATA 1128 Query 1449 GCACAGAGCCTATCAACATATTTCAAGGAAACTACAGCACGGATACACCTCCCATAAGGC 1508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1129 GCACAGAGCCTATCAACATATTTCAAGGAAACTACAGCACGGATACACCTCCCATAAGAC 1188 Query 1509 TGAGTTACCACCACGGGAATCATTATAATTCTTTGGTGGATCCACATCGGTTGACAGTTG 1568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 TGAGTTACCACCACGGGAATCATTATAATTCTTTGGTGGATCCACATCGGTTGACAGTTG 1248 Query 1569 GTGCAGGACTTGGATTTAGTAGCCTTAGTGGGAGACACGTGGACAAGGAACAGGTGAAAG 1628 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 GTGCCGGACTTGGATTTAGTAGCCTTAGTGGGAGACACGTGGACAAGGAACAGGTGAAAG 1308 Query 1629 CTGCTATAAAGGCTCAGCAAGAACATCAAATTGATAATGCGCTGTTAGCAGAAGGGAGAT 1688 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1309 CTGCTATAAAGGCTCAGCAAGAACATCAGATTGATAATGCGCTCTTAGCAGAAGGGAGAT 1368 Query 1689 TTTACTCTGACCTTGAGCTTACGGAAAAGGAAATAGAGCGGTCGGTAATGGAAGCTTCTC 1748 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct 1369 TTTACTCTGACCTTGAGCTTACGGAAAAGGAAATAGAGCGGGCGGTAATGGATGCTTCCC 1428 Query 1749 GTGCTGAGTATCTTATGGAATGGTCTAAGCCACGAATTGGTCCAAAGGAATCATCCACCT 1808 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1429 GTGCTGAATATCTTATGGAATGGTCTAAGCCACGAATTGGTCCAAAGGAATCATCCACCT 1488 Query 1809 CGAATGCTGAGACATCATCTTCTGGAGCTACAGGACCTTCAGGCAGCGATTCGAAACCAG 1868 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| Sbjct 1489 CGAATGCTGAGACATCATCTTCTGGAGCTA--G-ACCTTCAGGCAGTGATTCGAAACCAG 1545 Query 1869 CAG-AGGCAGTAAAA---GAAAAGACGGTGCTGAGCAGCAGTATCGAGATGGTATTGTCG 1924 || ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| Sbjct 1546 -AGGAGGCAGTAAAAAAAGAAAAGACTGTGCTGAGTAGCAGCATCGAGATGGTATTGTCG 1604 Query 1925 ATGGGATTTAGCTACGCACAGGCCATGGAAGCTTATAGCATTTTTGGGGATGACGTTGAC 1984 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1605 ATGGGATTTAGCTACACACAGGCCATGGAAGCTTATAGCATTTTTGGGGATGACGTTGAC 1664 Query 1985 TCTATGGTCTGTTATGTACTGGAGACGAGCTGTGGCGGCAACAACCGACGCAAAGGCAAA 2044 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1665 TCTATGGTCTGCTATGTACTTGAGACAAGCTGTGGCGGCAACAACCGACGCAAAGGCAAA 1724 Query 2045 GCCACGGAATAGAGAATGTAACATGAATTGCTCTGTATTAATAGTATATGATATACCAAT 2104 |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| Sbjct 1725 GCCACGGAATAGAGAATGTAACATGAGTTGCTCTGTATTAGTAGTATATGAAATACCAAT 1784 Query 2105 TCGTATTCCT---ATCAATGGTGGGCGATTACCCTTATCAGAATAATGAAAAATAAACTT 2161 |||||||||| | ||| |||||||||||||||||| |||||||||||| ||||||||| Sbjct 1785 TCGTATTCCTCCGACCAACGGTGGGCGATTACCCTTACCAGAATAATGAAGAATAAACTT 1844 Query 2162 GTGCATCCATGACATG 2177 |||||| ||||||||| Sbjct 1845 GTGCATTCATGACATG 1860 > Ahg359343 jgi|Araly1|359343|fgenesh1_pg.C_scaffold_128000002 Length=436 Score = 597 bits (323), Expect = 1e-169 Identities = 412/452 (91%), Gaps = 17/452 (4%) Strand=Plus/Plus Query 536 ATGACTCGGATTTTGGTTCAAAGAGGTTCATCAGGCAGTTCTTCCAACTCTAGCCGTCCT 595 ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| Sbjct 1 ATGACTCGGATTTTGGTTCAACGAGGTTCATCAGGAAGTTCTTCCAACTCGAGCCG---- 56 Query 596 TCTTCCTCATCTAGTTCTTCCTCGGGATCAGAAACACAGATAAACAATAATATTCCGGTT 655 | | | ||||||||| ||| ||||| ||||||||||||||| ||||| |||| Sbjct 57 -----C-C--C---TTCTTCCTCAGGAACAGAACCACAGATAAACAATACTATTCAGGTT 105 Query 656 CCTCCTGTTACTATAGATGAAGAAATTACGGATGAGAAACAAGAAGAGGTTACTGTAGTT 715 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 106 CCTCCTGTTACTATAGATGAAGAAATTACGGATGAGAAACAAGACGAGGTTACTGTAGTT 165 Query 716 GAAAAAGCAGAGTGTTCTGATGCTAAAGA-TGTAGCTGTGGACAGTGATGAACCTGCGGA 774 ||||||| |||||||||||||||||| || |||||||||||||||| ||||||||| ||| Sbjct 166 GAAAAAGTAGAGTGTTCTGATGCTAA-GAATGTAGCTGTGGACAGTAATGAACCTGTGGA 224 Query 775 TAGAGAAGATGATGAAGGGTTGGTAGTTGCAGAAAATGTTCATGTTCAAAGTGAAGGTAT 834 |||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 225 TAGAGAAGATGATGAAGGATTGGTAGTTTCAGAAAATGTTCATGTTGAAAGTGAAGGTAT 284 Query 835 AGATTGTGATTCTCCAGTTAGCGGTGGCAGTAACTCTGATTCACCACCCGTACCAGCTCC 894 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 285 AGATTGTGATTCTCCAGTTAGTGGTGGCAGTAACCCTGATTCACCACCCGTACCAGCTCC 344 Query 895 ACCACCAAAACCTTCTTCCACTGTCAATCCTGGTAGTAACAGATCGGTTTTGGGAAGTTT 954 |||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||| Sbjct 345 ACCACCAAAACCTTCTTCGACTGTCAATCCTGGGAATAACAGATCGGTCTTGGGAAGTTT 404 Query 955 TGGCGCTTTACGAATTGGACCAACACGAAGAG 986 || ||||||||||| ||||||||||||||||| Sbjct 405 TGACGCTTTACGAACTGGACCAACACGAAGAG 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86122043945 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5