BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27420.1 Length=1309 Score E Sequences producing significant alignments: (Bits) Value Ahg481640 jgi|Araly1|481640|fgenesh2_kg.4__700__AT2G27420.1 1901 0.0 Ahg348033 jgi|Araly1|348033|fgenesh1_pg.C_scaffold_5001425 761 0.0 Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1 75.0 1e-12 > Ahg481640 jgi|Araly1|481640|fgenesh2_kg.4__700__AT2G27420.1 Length=1259 Score = 1901 bits (1029), Expect = 0.0 Identities = 1176/1245 (94%), Gaps = 17/1245 (1%) Strand=Plus/Plus Query 18 AACCAAAACATTTGTATTATAAGAGTATTTTTATTGATACTATTTTTAAATTGTGCCCA- 76 ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1 AACCAAAACATTTGTATTAAAAGAGTATTTTTATTGATACTATATTTAAATTGTGCCCAT 60 Query 77 T-A----C--A-TATTACCTATAGGGAATGGCGTCAACTATCATCTTCATTCTAACTAtt 128 | | | | |||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct 61 TCATTTCCATACTATTACCTCTA-GGAATGTCGTCAACTATCATCTTCATTCTAACTATT 119 Query 129 tttttAAGTTACAGAACTTCGCTAGCTACATCTCGTGGTAGCCTTTTTGAAGCTTCTGCC 188 ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 120 TTTTTGAGTTACAGAACTTCGCTAGTTACATCTCGTGGTGGCCTTTTTGAAGCTTCTGCC 179 Query 189 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAAACCGAG 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAATCCGAG 239 Query 249 AAAAGAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAACTTCAACATG 308 |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 240 AAAAGAAATCGGTTCGATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAGCTTCAACATG 299 Query 309 AATAATAAAATCACGTACAAGGTT-GATATCAACGAGTTCTCTGATCTTACGGACGAAGA 367 ||||| || ||||||||||| ||| ||| ||||||||||||||||||| || |||||||| Sbjct 300 AATAAGAACATCACGTACAA-GTTGGATGTCAACGAGTTCTCTGATCTCACTGACGAAGA 358 Query 368 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGCTATAACCA-GAATTTCAACTC 426 |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| Sbjct 359 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGAAATAA-CAGGAATTTCAACTC 417 Query 427 TGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAATGTTAGTGATAATGGCGAGA 486 ||||||| || | ||| |||||||||||||||||| ||||||||||||||| |||||| | Sbjct 418 TGTCTTC-GG-ATAAA-ACGGTGCCGTTTAGATATCGTAATGTTAGTGATACTGGCGAAA 474 Query 487 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 534 Query 547 GATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCATTACAAAGATTACTAAAGGCG 606 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 535 GATGCTGGGCGTTTTCTGCGGTGGCGGCGGTGGAAGGCATTACAAAGATTACTAAAGGCG 594 Query 607 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGCGACAGAGACTACAATCAAGGAT 666 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 595 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGTGACAGAGACTACAATCAAGGAT 654 Query 667 GTCGTGGAGGGATAATGTCGAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 726 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 655 GTCATGGAGGGATAATGTCTAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 714 Query 727 CTGAGGATAACTATCCATACCAAGAATCACAACAAACTTGTAGTTCATCAACTACCCTAT 786 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 715 CTGAGGATAACTATCCATATCAAGAATCACAACAAACTTGTAGTTCTTCAACTACCCTAT 774 Query 787 CATCGTCTTTTCGTGCAGCCACAATCAGCGGATATGAGACCGTTCCAATGAATAATGAGG 846 |||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 775 CATCGTCTTTCCGTGCTGCTACAATCAGCGGATATGAGACAGTTCCAATGAATAATGAGG 834 Query 847 AAGCGTTGCTACAAGCAGTGTCTCAACAGCCTGTTTCTGTGGGGATAGAAGGGACAGGGG 906 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 835 AAGCGTTGCTACAAGCGGTGTCTCAACAGCCTGTTTCCGTGGGGATAGAAGGGACAGGAG 894 Query 907 CCGCGTTTAGGCACTACTCGGGAGGGGTATTCAACGGAGAATGTGGGACGGATTTGCATC 966 |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| Sbjct 895 CCGCGTTTAGGCACTACTCGGGCGGGATATTCAATGGAGAATGTGGGACGGATTTGCATC 954 Query 967 ATGCGGTTACAATTGTTGGTTATGGAATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1026 ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 955 ATGCGGTCACGATTGTTGGTTATGGTATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1014 Query 1027 AGAATTCTTGGGGGGAAACTTGGGGAGAAAATGGTTACATGAGGATCAAGAGAGACGTGG 1086 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 1015 AGAATTCTTGGGGGGAAACTTGGGGAGAGGATGGTTTCATGAGGATCAAGAGAGACGTGG 1074 Query 1087 ATGCACCCCAAGGAATGTGTGGTTTGGCCATTCTTGCTTTCTATCCACTTGCTTGAATAC 1146 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1075 ATGCACCCCAAGGAATGTGTGGTTTGGCCATGCTTGCTTTCTATCCACTTGCTTGAATAC 1134 Query 1147 ATGAAGATTGATTGGGTGGGCTTGAAGTAGTTGAAAGTATTCTGATCAAAATGTTATTTT 1206 ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| Sbjct 1135 ATGAAGATTGATTGGGTGGGCTTGAAGTAATTGAAAATACGCTGATCAAAATGTTATTTT 1194 Query 1207 GAGAAACATTATGGTCCCCATGTTTTCGTGCAAATGGATTGATAT 1251 ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1195 AAGAAACATTATGGTCCCCATGTTTTTGTGCAAATGGATTGATAT 1239 > Ahg348033 jgi|Araly1|348033|fgenesh1_pg.C_scaffold_5001425 Length=1026 Score = 761 bits (412), Expect = 0.0 Identities = 842/1044 (81%), Gaps = 52/1044 (5%) Strand=Plus/Plus Query 114 TTCATTCTAACTAtttttttAAGTTACAGAACTTC-GCTAGCTACATCTCGTGGTAGCCT 172 ||| ||||| | ||| |||| |||| ||||||||| | ||| ||||||||||| | || Sbjct 20 TTC-TTCTAGCCATTATTTTGAGTTCCAGAACTTCAG-GAGCCACATCTCGTGGGGGGCT 77 Query 173 TTTTGAAGCTTCTGCCATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTA 232 |||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||| Sbjct 78 CTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATGGATGTCTCGATTCCATCGCGTTTA 137 Query 233 CTCTGACGAAACCGAGAAAA-GAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCG 291 ||| ||||| | ||||||| | | | ||||| | ||||| |||||||| || |||||| Sbjct 138 CTCAGACGATTCTGAGAAAACG-AGTAGGTTTGAGATCTTTAAGAAGAACTTAAAGTTCG 196 Query 292 TCCAGAACTTCAACATGAATAATAA-AATCACGTACAAGGTT-GATATCAACGAGTTCTC 349 || ||| |||||||||||||| || || |||||| | ||| ||| | ||||||||||| Sbjct 197 TCGAGAGCTTCAACATGAATACGAACAA-AACGTAC-ACGTTGGATGTTAACGAGTTCTC 254 Query 350 TGATCTTACGGACGAAGAATTTCGGGCGACACACACTGGACTAGTTGTGCCCG-AGGCTA 408 |||||| || ||||| |||||| ||||| |||| || || || ||||||| ||| || Sbjct 255 TGATCTAACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTGGTGCCCGAAGG-TA 313 Query 409 TAACCAGAATTTCAAC-TCTGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAAT 467 | |||||||| ||||| | | ||| || || ||||| |||||||||||| ||| Sbjct 314 TGACCAGAATGTCAACAAC-GGATTC--TCATGAA-ACGGTATCGTTTAGATATGAAAAT 369 Query 468 GTTAGTGATAA-TGGCGAGAGCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAA 526 ||| |||| || || |||||||||||||||||| | || |||||||||||| ||||||| Sbjct 370 GTTGGTGA-AACCGGTGAGAGCATGGATTGGAGAGAGGAAGGGGCTGTTACATCCGTTAA 428 Query 527 GTATCAAGGCCGATGTGGAGGATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCAT 586 | | ||| | |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 429 GCACCAACAACAATGTGGAGGATGTTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCAT 488 Query 587 TACAAAGATTACTAAAGGCGAGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGC-G 645 |||||||||| ||||||||||||| || ||||| || ||||| ||||| || || || | Sbjct 489 TACAAAGATTGCTAAAGGCGAGCTCGTGTCGCTGTCTGAGCAGCAACTGTTGGATTGTAG 548 Query 646 -ACAGAGACTACAATCAAGGATGTCGT-GGAGGGATAATGTCGAAAGCTTTCGAGTACAT 703 || || | || || |||||| | ||||||||||||| |||||||||||| ||||| Sbjct 549 TACGGAAA--ACGAT---GGATGT-GACGGAGGGATAATGTGGAAAGCTTTCGACTACAT 602 Query 704 AATCA-AAAACCAAGGCATCACTACTGAGGATAACTATCCATACCAAGAATCACAACAAA 762 | | |||||||||| ||||| | |||||||| ||||| ||||||| | ||||||||| Sbjct 603 TGT-AGAAAACCAAGGAATCACCGCAGAGGATAATTATCCCTACCAAGGAGCACAACAAA 661 Query 763 CTTGT-AGTTCATCAACTACCCTATCATCGTCTTTTCGTGC-AGCCACAATCAGCGGATA 820 | ||| ||| || || | | | | | | || | ||| | ||| |||||||||| Sbjct 662 CCTGTGAGT-CA--AA-T-CA-TGT-A--G-CTG--C-TGCTA-CCA---TCAGCGGATA 704 Query 821 TGAGACCGTTCC--AATGAATAATGAGGAAGCGTTGCTACAAGCAGTGTCTCAACAGCCT 878 || || ||||| || ||| | |||||||| |||||| |||| ||||||||||||||| Sbjct 705 CGAAACGGTTCCCCAA--AATGACGAGGAAGCATTGCTAAAAGCGGTGTCTCAACAGCCT 762 Query 879 GTTTCTGTGGGGATAGAAGGGACAGGGGCCGCGTTTAGGCACTACTCGGGAGGGGTATTC 938 ||||| |||| |||||||||| |||| | ||||| |||||||| || ||| |||| Sbjct 763 GTTTCCGTGGCGATAGAAGGGTCAGGATATGAGTTTATACACTACTCAGGCGGGATATTT 822 Query 939 AACGGAGAATGTGGGACGGATTTGCATCATGCGGTTACAATTGTTGGTTATGGAATGAGT 998 |||||||| ||||||||| ||||| ||||||||||||| |||||||||||||| |||| Sbjct 823 AACGGAGAGTGTGGGACGCATTTGAATCATGCGGTTACGATTGTTGGTTATGGGGTGAGC 882 Query 999 GAAGAAGGGACTAAGTATTGGGTGGTGAAGAATTCTTGGGGGGAAACTTGGGGAGAAAAT 1058 |||||||||| |||||||||| || ||||||| || ||||| ||| ||||||||||| || Sbjct 883 GAAGAAGGGATTAAGTATTGGTTGTTGAAGAACTCGTGGGGAGAATCTTGGGGAGAAGAT 942 Query 1059 GGTTACATGAGGATCAAGAGAGACGTGGATGCACCCCAAGGAATGTGTGGTTTGGCCATT 1118 ||||| ||||| |||| ||||||||| |||||||| |||||||||||||||||||||| Sbjct 943 GGTTATATGAGAATCATGAGAGACGTAGATGCACCTCAAGGAATGTGTGGTTTGGCCAGC 1002 Query 1119 CTTGCTTTCTATCCACTTGCTTGA 1142 ||||||| ||||||| | |||||| Sbjct 1003 CTTGCTTACTATCCAGTAGCTTGA 1026 > Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1 Length=969 Score = 75.0 bits (40), Expect = 1e-12 Identities = 58/66 (88%), Gaps = 4/66 (6%) Strand=Plus/Plus Query 1046 TTGGGGAGAAAATGGTTACATGAGGATCAAG-AGAGACGTGGA-TGCACCCCAAGGAATG 1103 |||||||||||||||||||||||||||| | ||||| ||||| || || ||||||||| Sbjct 873 TTGGGGAGAAAATGGTTACATGAGGATCC-GTAGAGATGTGGAGTGG-CCTCAAGGAATG 930 Query 1104 TGTGGT 1109 |||||| Sbjct 931 TGTGGT 936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48949825428 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5