BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27580.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938658 jgi|Araly1|938658|scaffold_502849.1 614 5e-175
Ahg933291 jgi|Araly1|933291|scaffold_401279.1 614 5e-175
> Ahg938658 jgi|Araly1|938658|scaffold_502849.1
Length=536
Score = 614 bits (332), Expect = 5e-175
Identities = 466/527 (88%), Gaps = 23/527 (4%)
Strand=Plus/Plus
Query 279 GTTATGGCGGAAGAACACAGACTTCAAGAACCACGATTATGTGCTAACAATTGTGGCTTC 338
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 22 GTTATGGCGGAAGAACACAGGCTTCAAGAACCACGATTATGTGCTAAGAATTGTGGTTTC 81
Query 339 TTCGGAAGCACAGCTACACAAAATCTCTGTTCCAAATGTTTTC-GAGATCTTCAACATCA 397
|| |||||||| |||||||||||||| ||||| ||||| |||| ||||| ||||||||||
Sbjct 82 TTTGGAAGCACCGCTACACAAAATCTTTGTTCTAAATG-TTTCAGAGATGTTCAACATCA 140
Query 398 AGAACAAAACTCTTCCACCGCCAAACATGCTCTTACCCAATCCTTAGCCGCCG----T-- 451
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |
Sbjct 141 AGAACAAAACTCTTCCACCGCTAAACACGCTCTTAACCAAACCTTAGCCGCCGTTTCTAC 200
Query 452 ---TGGCGCTGCTGCGTCTTCCTCCGTGTCGCCACCGCCTCCGCCTCCAGCTGATTCGAA 508
||||| | | ||||| |||||||| | || || ||||||| ||||||||||||
Sbjct 201 AGGTGGCGGTACCGCGTCCTCCTCCGTAT---CA---CCACCGCCTCAAGCTGATTCGAA 254
Query 509 AGAAATCGTTGAAGCGAAATCAG-AGAAACGAGCGGCGGCTGAACCGGAGGAGGCGGATG 567
||||||||| |||||||| || | ||||||||||||||||||| |||||| ||||
Sbjct 255 AGAAATCGTCGAAGCGAATTC-GAAGAAACGAGCGGCGGCTGAGGAGGAGGAAGCGG--C 311
Query 568 GTCCGCCGCAAGATCCGAAGCGGTGTTTGACTTGTCGGCGGCGCGTGGGAATCACGGGGT 627
| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 312 G-CCGTCGCAAGATCCGAAGCGGTGTTTGACTTGTCGGCGGCGGGTGGGAATAACGGGGT 370
Query 628 TTCGGTGTAGGTGTGGTTTCGTTTTCTGCGGGACGCATAGGTACGCGGAGCAACATGAAT 687
|||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 371 TTCGGTGTAGGTGTGGCTTCGTTTTCTGTGGGACACATAGGTACGCGGAGCTGCATGAAT 430
Query 688 GTTCGTTTGATTTCAAGCGGATGGGGAAGGATAAGATCGCTAAAGCGAATCCGATTGTGA 747
||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||
Sbjct 431 GTTCGTTTGATTTCAAGAGGATTGGGAAGGATAAGATCGCTAAGGCGAATCCGATTGTGA 490
Query 748 AAGCTGATAAGCTTGAGAAGATTTGACtttgttgtttgttgtttgtt 794
|||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 491 AAGCTGATAAGCTTGAGAAGATTTGAGTTTGTTGTTTGTTGTT-GTT 536
> Ahg933291 jgi|Araly1|933291|scaffold_401279.1
Length=536
Score = 614 bits (332), Expect = 5e-175
Identities = 466/527 (88%), Gaps = 23/527 (4%)
Strand=Plus/Plus
Query 279 GTTATGGCGGAAGAACACAGACTTCAAGAACCACGATTATGTGCTAACAATTGTGGCTTC 338
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 22 GTTATGGCGGAAGAACACAGGCTTCAAGAACCACGATTATGTGCTAAGAATTGTGGTTTC 81
Query 339 TTCGGAAGCACAGCTACACAAAATCTCTGTTCCAAATGTTTTC-GAGATCTTCAACATCA 397
|| |||||||| |||||||||||||| ||||| ||||| |||| ||||| ||||||||||
Sbjct 82 TTTGGAAGCACCGCTACACAAAATCTTTGTTCTAAATG-TTTCAGAGATGTTCAACATCA 140
Query 398 AGAACAAAACTCTTCCACCGCCAAACATGCTCTTACCCAATCCTTAGCCGCCG----T-- 451
||||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |
Sbjct 141 AGAACAAAACTCTTCCACCGCTAAACACGCTCTTAACCAAACCTTAGCCGCCGTTTCTAC 200
Query 452 ---TGGCGCTGCTGCGTCTTCCTCCGTGTCGCCACCGCCTCCGCCTCCAGCTGATTCGAA 508
||||| | | ||||| |||||||| | || || ||||||| ||||||||||||
Sbjct 201 AGGTGGCGGTACCGCGTCCTCCTCCGTAT---CA---CCACCGCCTCAAGCTGATTCGAA 254
Query 509 AGAAATCGTTGAAGCGAAATCAG-AGAAACGAGCGGCGGCTGAACCGGAGGAGGCGGATG 567
||||||||| |||||||| || | ||||||||||||||||||| |||||| ||||
Sbjct 255 AGAAATCGTCGAAGCGAATTC-GAAGAAACGAGCGGCGGCTGAGGAGGAGGAAGCGG--C 311
Query 568 GTCCGCCGCAAGATCCGAAGCGGTGTTTGACTTGTCGGCGGCGCGTGGGAATCACGGGGT 627
| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 312 G-CCGTCGCAAGATCCGAAGCGGTGTTTGACTTGTCGGCGGCGGGTGGGAATAACGGGGT 370
Query 628 TTCGGTGTAGGTGTGGTTTCGTTTTCTGCGGGACGCATAGGTACGCGGAGCAACATGAAT 687
|||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 371 TTCGGTGTAGGTGTGGCTTCGTTTTCTGTGGGACACATAGGTACGCGGAGCTGCATGAAT 430
Query 688 GTTCGTTTGATTTCAAGCGGATGGGGAAGGATAAGATCGCTAAAGCGAATCCGATTGTGA 747
||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||
Sbjct 431 GTTCGTTTGATTTCAAGAGGATTGGGAAGGATAAGATCGCTAAGGCGAATCCGATTGTGA 490
Query 748 AAGCTGATAAGCTTGAGAAGATTTGACtttgttgtttgttgtttgtt 794
|||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 491 AAGCTGATAAGCTTGAGAAGATTTGAGTTTGTTGTTTGTTGTT-GTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5