BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27680.1 Length=1373 Score E Sequences producing significant alignments: (Bits) Value Ahg933276 jgi|Araly1|933276|scaffold_401264.1 1808 0.0 Ahg900573 jgi|Araly1|900573|Al_scaffold_0004_1223 1580 0.0 > Ahg933276 jgi|Araly1|933276|scaffold_401264.1 Length=1201 Score = 1808 bits (979), Expect = 0.0 Identities = 1130/1203 (94%), Gaps = 10/1203 (1%) Strand=Plus/Plus Query 29 AGAAGCGACAGAGTGAGGCCATGCCTGTGTCCGTACATTCCGTTATCGCCACGAACCTAG 88 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAAGCGAGAGAGTGAGGCCATGCCTGTGTCCGTACATTCCGTTATCGCCACGAACCTAG 60 Query 89 CCACTACACTATCATCGAA-----TT-ACCGGAATGTTTCTCGCCGTAGAACT-ATCTCC 141 | |||||| |||||||||| || |||||||||||||||||||| || | | ||| Sbjct 61 CGACTACAGTATCATCGAATCGGTTTCACCGGAATGTTTCTCGCCGTCTAA-TCAGCTCA 119 Query 142 ACCTCTGTGAATTGTTCGGTGGAGATTACGGAGGCTGATCGGTCGGTGAAACTGAAGAAC 201 | ||| ||||| || |||||||||| | ||| |||||||||| |||||| ||||||||| Sbjct 120 AGCTCCGTGAAATGCTCGGTGGAGACGAAGGAAGCTGATCGGTGGGTGAAGCTGAAGAAC 179 Query 202 GGGAACGATTCACTGGAGATATGCAGAGTTCTCAACGGGATGTGGCAAACGAGCGGAGGA 261 || ||||||||||||||||||||||||||||| || || |||||||||||||| |||||| Sbjct 180 GGTAACGATTCACTGGAGATATGCAGAGTTCTTAATGGAATGTGGCAAACGAGTGGAGGA 239 Query 262 TGGGGGAAGATTGATCGAAACGACGCCGTTGATTCAATGCTTCGTTACGCCGATGCTGGT 321 ||||||| |||||| |||||||||||||||||| |||||||||| |||| ||||||||| Sbjct 240 TGGGGGAGGATTGACCGAAACGACGCCGTTGATGCAATGCTTCGACACGCTGATGCTGGT 299 Query 322 CTCTCTACTTTCGATATGGCTGATCACTATGGTCCTGCTGAAGATCTTTACGGTATTTTT 381 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 300 CTCTCTACTTTCGATATGGCTGATCATTATGGTCCTGCTGAAGATCTTTACGGCATTTTT 359 Query 382 ATCAATAGAGTTCGTCGAGAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACA 441 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 360 ATCAATAGAGTTCGTCGAGAGCGTCCACCGGAGTATTTGGAGAAGATTAAAGGTTTGACA 419 Query 442 AAATGGGTGCCTCCTCCAATAAAGATGACAAGTAGCTATGTTCGTCAGAACATCGATATA 501 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 420 AAATGGGTGCCTCCTCCAATAAAGATGACAAGTAGCTATGTTCGTCAGAACATTGATATA 479 Query 502 TCGAGGAAGAGAATGGATGTGGCTGCTCTTGATATGCTTCAGTTTCACTGGTGGGATTAT 561 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 480 TCGCGGAAGAGAATGGATGTGGCTGCTCTTGATATGCTTCAGTTTCATTGGTGGGATTAT 539 Query 562 GCGAATGACGGCTATCTTGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGGGAAA 621 |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| Sbjct 540 GCGAATGACGGCTATCTTGATGCACTGAAACATCTCACTGACCTGAAAGAAGAAGGGAAA 599 Query 622 ATCAAGACTGTTGCTTTGACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAAT 681 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 600 ATCAAGACTGTTGCTTTGACAAATTTTGATACAGAGAGACTTCAAAAAATCTTAGAGAAT 659 Query 682 GGAATCCCTGTCGTTAGCAATCAGGTGCAACACTCCATCGTAGACATGCGTCCTCAACAG 741 |||||||| || || |||||||| ||||||||||| || ||||| ||||||||||||||| Sbjct 660 GGAATCCCGGTTGTCAGCAATCAAGTGCAACACTCTATTGTAGATATGCGTCCTCAACAG 719 Query 742 AGAATGGCTCAGCTTTGCGAGCTTACAGGGGTCAAACTTATAACATATGGGACAGTTATG 801 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 720 AGAATGGCTCAGCTTTGCGAGCTTACAGGCGTCAAACTTATAACATATGGGACAGTAATG 779 Query 802 GGTGGTCTCTTGTCAGAGAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCT 861 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GGTGGTCTCCTGTCAGAGAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCT 839 Query 862 CGCTTGAATACTCCATCTCTCCAAAAATACAAAAGGATGGTTGATGCATGGGGAGGGTGG 921 |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 840 CGCTTGAATACTCCTTCTCTGCAAAAGTACAAAAGGATGGTTGATGCATGGGGAGGGTGG 899 Query 922 AATCTATTTCAAGGTTTACTTCGAACAATGAAGACCATATCCACAAAACATGGAGTCTCT 981 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 900 AATCTATTTCAAGGTCTACTTCGAACAATGAAGAGCATATCCACAAAACATGGAGTCTCT 959 Query 982 ATACCAACAGTGGCTGTGAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATT 1041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 ATACCAACAGTGGCTGTGAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATT 1019 Query 1042 GGAGTGAGACTCGGGTTAGCGGAACACATACAAGACGCAAATGCTATATTCTCATTGGTA 1101 || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1020 GGGGTGAGGCTCGGGTTAGCGGAACACATACAAGACGCAAACGCTATATTCTCATTGGTA 1079 Query 1102 TTGGATGAAGAAGATGTTAATAGCATACAAGAGGTTACCAAGAAAGGTAAAGATCTTCTC 1161 ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct 1080 TTGGATGAAGAAGATGTGAATAGCATTCAAGAGGTTACCAAGAAAGGTAAAAATCTTCTC 1139 Query 1162 CAAGTGATTGGTGACTGCGGAGACGAATACCGACGTATATGATGTG-TAGCTATGTACTC 1220 |||||||||||||| || |||||||||||||||||||||||||||| ||| ||| ||||| Sbjct 1140 CAAGTGATTGGTGATTGTGGAGACGAATACCGACGTATATGATGTGGTAG-TATATACTC 1198 Query 1221 TAT 1223 ||| Sbjct 1199 TAT 1201 > Ahg900573 jgi|Araly1|900573|Al_scaffold_0004_1223 Length=1161 Score = 1580 bits (855), Expect = 0.0 Identities = 1064/1165 (91%), Gaps = 14/1165 (1%) Strand=Plus/Plus Query 49 ATGCCTG-TGTCCGTACATTCCGTTATCGCCACGAACCTAGCCACTACACTATCATCGAA 107 ||||| | |||||||||||||||| ||||||||||||||||| |||||| ||||||| || Sbjct 1 ATGCC-GATGTCCGTACATTCCGTCATCGCCACGAACCTAGCGACTACAGTATCATCCAA 59 Query 108 ----TT--ACCGGAATGTTTCTCGCCGTAGAACT-ATCTCCACCTCTGTGAATTGTTCGG 160 || ||||| ||||||||||||| ||| | ||||| ||| ||||| || ||| Sbjct 60 TTGGTTAAACCGGCGTGTTTCTCGCCGTCGAA-TCGGCTCCAGCTCCGTGAAATGCTCGA 118 Query 161 TGGAGATTACGGAGGCTGATCGGTCGGTGAAACTGAAGAACGGGAACGATTCACTGGAGA 220 ||||| ||||| ||||| |||| |||||| |||||||||||||||||||||||||||| Sbjct 119 CGGAGACGACGGAAGCTGACCGGTGGGTGAAGCTGAAGAACGGGAACGATTCACTGGAGA 178 Query 221 TATGCAGAGTTCTCAACGGGATGTGGCAAACGAGCGGAGGATGGGGGAAGATTGATCGAA 280 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 179 TATGCAGAGTTCTTAACGGAATGTGGCAAACGAGTGGAGGATGGGGGAAGATTGACCGAA 238 Query 281 ACGACGCCGTTGATTCAATGCTTCGTTACGCCGATGCTGGTCTCTCTACTTTCGATATGG 340 |||||||||| ||| | ||||| || ||||||||||||||||||||||| |||||||||| Sbjct 239 ACGACGCCGTAGATGCTATGCTCCGATACGCCGATGCTGGTCTCTCTACCTTCGATATGG 298 Query 341 CTGATCA-CTATGGTCCTGCTGAAGATCTTTACGGTATTTTTATCAATAGAGTTCGTCGA 399 |||| || ||||||||| |||||||||||||||| |||||| ||||||||||||||||| Sbjct 299 CTGA-CATTTATGGTCCTTCTGAAGATCTTTACGGCATTTTTGTCAATAGAGTTCGTCGA 357 Query 400 GAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACAAAATGGGTGCCTCCTCCA 459 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 358 GAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACAAAATGGGTTCCTCCTCCA 417 Query 460 AT-AAAGATGACAAGTAGCTATGTTCGTCAGAACATCGATATATCGAGGAAGAGAATGGA 518 | ||| ||||| |||||||||||||| | |||||||| | |||| ||||||||||||| Sbjct 418 GTGAAA-ATGACTCGTAGCTATGTTCGTGAAAACATCGAAAAATCGCGGAAGAGAATGGA 476 Query 519 TGTGGCTGCTCTTGATATGCTTCAGTTTCACTGGTGGGATTATGCGAATGACGGCTATCT 578 ||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 477 TGTGGCTTCTCTTGATATGCTTCAGTTTCATTGGTGGGATTATGCAAATGACGGTTATCT 536 Query 579 TGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGGGAAAATCAAGACTGTTGCTTT 638 ||||||||||||||||||||| ||| | || |||||||| ||||||||||| ||||| || Sbjct 537 TGATGCACTGAAACATCTCACTGACCTAAAAGAAGAAGGTAAAATCAAGACCGTTGCATT 596 Query 639 GACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAG 698 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GACAAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAG 656 Query 699 CAATCAGGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTTTG 758 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 657 CAATCAGGTGCAACACTCTATTGTAGACATGCGTCCTCAACAAAGAATGGCTCAGCTTTG 716 Query 759 CGAGCTTACAGGGGTCAAACTTATAACATATGGGACAGTTATGGGTGGTCTCTTGTCAGA 818 |||||| |||| || |||||||||||||||||||| || |||||||||||| ||||||| Sbjct 717 TGAGCTTTCAGGCGTTAAACTTATAACATATGGGACTGTAATGGGTGGTCTCCTGTCAGA 776 Query 819 GAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCTCGCTTGAATACTCCATC 878 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 777 GAAGTTTCTTGATGCTAATCTAACAATCCCTTTTGCTGGCCCTCGCTTGAATACTCCTTC 836 Query 879 TCTCCAAAAATACAAAAGGATGGTTGATGCATGGGGAGGGTGGAATCTATTTCAAGGTTT 938 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 837 TCTCCAAAAGTACAAAAGGATGGTTGATGCATGGGGAGGGTGGAATCTATTCCAAGGTTT 896 Query 939 ACTTCGAACAATGAAGACCATATCCACAAAACATGGAGTCTCTATACCAACAGTGGCTGT 998 ||||||||| ||||||| ||| ||||||||||||||||||| || |||||||||||||| Sbjct 897 ACTTCGAACGATGAAGAGTATAGCCACAAAACATGGAGTCTCGATTCCAACAGTGGCTGT 956 Query 999 GAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATTGGAGTGAGACTCGGGTT 1058 |||||||||||||||||||| || |||| ||||||||||||||| |||||||||||||| Sbjct 957 GAGATATGTACTAGATCAGCCTGGGGTTGCTGGATCAATGATTGGGGTGAGACTCGGGTT 1016 Query 1059 AGCGGAACACATACAAGACGCAAATGCTATATTCTCATTGGTATTGGATGAAGAAGATGT 1118 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1017 AGCGGAACACATACAAGACGCAAACGCTATATTCTCATTGGTATTGGATGAAGAAGATGT 1076 Query 1119 TAATAGCATACAAGAGGTTACCAAGAAAGGTAAAGATCTTCTCCAAGTGATTGGTGACTG 1178 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1077 TAATAGCATACAAGAGGTTACCAAGAAAGGAAAAGATCTTCTCCAAGTGATTGGTGATTG 1136 Query 1179 CGGAGACGAATACCGACGTATATGA 1203 ||||||||||||||| |||||||| Sbjct 1137 TGGAGACGAATACCGAAGTATATGA 1161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51389692116 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5