BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27820.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481721 jgi|Araly1|481721|fgenesh2_kg.4__781__AT2G27820.1 1786 0.0
> Ahg481721 jgi|Araly1|481721|fgenesh2_kg.4__781__AT2G27820.1
Length=1415
Score = 1786 bits (967), Expect = 0.0
Identities = 1161/1249 (93%), Gaps = 35/1249 (3%)
Strand=Plus/Plus
Query 276 GTC-ACAACAACGGCGCCGGAGTCTCAGATTTGAATCTAGTTCCATTCAACAACAAC--C 332
||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 196 GTCAACAACAACGGCGCCGGAATCTCAGATTTGAATCTAGTTCCATTCAATAACAACAGC 255
Query 333 -AATCGATTCAATCGAAGAAGCCT-TTAAGTATTTCAGATCTATCTCCAGCTCCGATGCA 390
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 256 AAATCGATTCAATCGAAGAAGCCTCTT-AGTATTTCAGATCTATCTCCAGCTCCGATGCA 314
Query 391 TGGATCTAACCTCCGTGTAGCTTATCAAGGTGTTCCCGGAGCTTACTCCGAAGCCGCCGC 450
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 315 TGGATCTAACCTCCGCGTCGCCTATCAAGGTGTTCCCGGAGCTTACTCCGAAGCCGCCGC 374
Query 451 TGGTAAAGCTTATCCTAACTGTCAAGCGATTCCTTGCGATCAATTCGAAGTTGCGTTTCA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TGGTAAAGCTTATCCTAACTGTCAAGCGATTCCTTGCGATCAATTCGAAGTTGCGTTTCA 434
Query 511 AGCGGTTGAGCTTTGGATCGCCGATCGCGCTGTTTTACCCGTCGAAAACTCACTCGGCGG 570
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 AGCGGTTGAGCTTTGGATCGCCGATCGCGCTGTTTTACCTGTCGAAAACTCACTCGGCGG 494
Query 571 TTCGATTCATCGTAATTACGATCTTCTCCTCCGTCACCGTCTTCACATCGTCGGCGAAGT 630
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 495 TTCGATTCATCGGAATTACGATCTTCTTCTCCGTCACCGTCTTCATATCGTCGGTGAAGT 554
Query 631 TCAGCTTCCGGTTCATCATTGTCTCATTGCTCTTCCCGGTGTACGGAAAGAGTTTCTCAC 690
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 555 TCAACTTCCGGTACATCATTGTCTCATGGCTCTTCCCGGTGTACGGAAAGAGTTTCTCAC 614
Query 691 TCGTGTGATCTCTCATCCTCAAGGACTAGCTCAATGCGAACACACGTTGACTAAACTCGG 750
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TCGCGTTATCTCTCATCCTCAAGGACTAGCTCAATGCGAACACACGTTGACTAAACTCGG 674
Query 751 TCTCAACGTAGCTCGTGAAGCTGTTGATGATACCGCCGGTGCGGCGGAGTTTATCGCTGC 810
||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 675 TCTCAACGTCGCTCGTGAAGCGGTTGATGATACCGCCGGAGCAGCGGAGTTTATCGCTGC 734
Query 811 GAATAATATCCGTGACACCGCCGCGATTGCGAGTGCACGCGCGGCGGAGATCTACGGATT 870
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GAACAATATCCGTGATACCGCCGCGATTGCGAGTGCACGCGCGGCGGAGATCTACGGATT 794
Query 871 GGAGATTTTGGAAGATGGGATACAAGATGACGCGAGTAACGTCACGCGCTTTGTGATGTT 930
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 795 GGAGATTTTGGAAGATGGGATTCAAGATGACGCGAGTAACGTCACGCGCTTTGTGATGTT 854
Query 931 GGCGCGTGAACCGATTATACCGAGAACTGATCGGCCGTTTAAGACGAGTATAGTGTTTGC 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGCGCGTGAACCGATTATACCGAGAACTGATCGGCCGTTTAAGACGAGTATAGTGTTTGC 914
Query 991 TCACGAGAAAGGCACGTGCGTTTTGTTTAAGGTTCTCTCTGCTTTTGCGTTTAGGAACAT 1050
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 915 TCACGAGAAAGGCACGTGCGTTTTGTTTAAGGTTCTCTCGGCTTTTGCGTTTAGGAACAT 974
Query 1051 TAGTTTGACTAAGATTGAGTCTAGGCCGAACCATAATGTTCCTATTAGGCTAGTCGATGA 1110
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 975 TAGTTTGACTAAGATTGAGTCTAGGCCCAACCATAATGTTCCCATTAGGCTAGTCGATGA 1034
Query 1111 GGCTAATGTGGGCACGGCTAAGCATTTTGAGTATATGTTTTATATCGACTTCGAGGCTTC 1170
||| |||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1035 GGCCAATGTGGGAACGGCCAAGCATTTCGAGTACATGTTTTATATCGATTTCGAGGCTTC 1094
Query 1171 CATGGCCGAGTCACGTGCTCAGAATGCGCTTTCTGAGGTTCAAGAGTTTACGTCGTTTTT 1230
||||||||| | |||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 1095 GATGGCCGAGGCGCGTGCTCAAAATGCGCTTGCTGAGGTTCAGGAGTTTACGTCGTTTTT 1154
Query 1231 ACGGGTTTTGGGGAGTTATCCGATGGATATGACTTCTTGGTCACCATCGTCTTCGTCCTC 1290
||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1155 ACGGGTTTTGGGGAGTTATCCCATGGATATGACTTCTTGGTCTCCATCGTCT-------- 1206
Query 1291 TTCGTCATCAACATTTTCATTGTGACAACACTAAGATCATAACCAACGTG-TGAAGTCAA 1349
| || ||||||||||||||| |||||||||| |||||| ||| | || ||||
Sbjct 1207 ------A-CA---TTTTCATTGTGACAATACTAAGATCAAAACCAAAGTGAT-AATTCAA 1255
Query 1350 TTGTGTATGTAAATTGGAGAAGAAAGTTGTAAACATAATTTTGGTGAAAATAAATTACTT 1409
||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1256 TTGGGAAAGTAAATTGGAGAAGAAAGTTGTAAACATAATTTTGATGAAAATAAATTATTT 1315
Query 1410 ATTTCTCCAAAGATCAATCTTTTGTATTTTGCTGTTTACATTATTATACTTTGGAGTTTC 1469
|||||||||| ||||| ||||||||||||| ||||||||||||| | ||||| ||||||
Sbjct 1316 ATTTCTCCAA-GATCAGTCTTTTGTATTTT-CTGTTTACATTAT-A--CTTTG-AGTTTC 1369
Query 1470 GTTTGATCGTAGTTTTATTATGAAATTGCAAGTTTTGAGTTGATTTATT 1518
||||||| ||| || | || ||||||| ||||||||||| |||||||||
Sbjct 1370 GTTTGATTGTA-TTAT-TT-TGAAATTACAAGTTTTGAGCTGATTTATT 1415
Score = 255 bits (138), Expect = 5e-67
Identities = 173/190 (91%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 41 ATGAGAACTCTCTTACCTTCCCATACTCCGGCAACGGTAACAACGGCGGCGAGAAGAAGA 100
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGAACTCTCTTACCTTCCCATACTCCGGCGACGGTAACAACGGCGGCGAGAAGAAGA 60
Query 101 CACGTCATACATTGCGCCGGTAAGAGATCTGACTCTTTCTCCATTAATTCCAGTAGCTCC 160
||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||
Sbjct 61 CACGTCATACATTGCGCCGGTAAGAGATCTGACTCGTTCTCAATTGGTTCCAGTATCTCC 120
Query 161 GATTGGCAAAGCTCCTGCGCCATTCTCTCAAGCAAAGTTAACTCACAAGAACAATCTGAA 220
|||||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 121 GATTGGCAAAGCTCATGCGCTATTCTCTCTAGCAAAGTCGTTTCACAAGAACAATCCGAT 180
Query 221 TCCTTA-TCT 229
||| || |||
Sbjct 181 TCCCTAATCT 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5