BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27830.1 Length=1258 Score E Sequences producing significant alignments: (Bits) Value Ahg481720 jgi|Araly1|481720|fgenesh2_kg.4__780__AT2G27830.1 1033 0.0 > Ahg481720 jgi|Araly1|481720|fgenesh2_kg.4__780__AT2G27830.1 Length=947 Score = 1033 bits (559), Expect = 0.0 Identities = 823/939 (88%), Gaps = 64/939 (7%) Strand=Plus/Plus Query 351 CTCTTAACATTCCATTACTC-TTATCCTTT-TACCCTCATCATCCTCCACTATTTACAGT 408 ||||| |||||||||||||| |||| |||| |||||||| ||||||||| |||||||| | Sbjct 42 CTCTT-ACATTCCATTACTCTTTAT-CTTTATACCCTCACCATCCTCCATTATTTACATT 99 Query 409 TTTGCCACTCTGACTTTATG---CTAGCTTCTTCCGGTGACTGGCGATAACACGAGAGAG 465 |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 100 TTTGCCACTCTGACTTTATGTTATTAGCTTCTTCCGGTGACCGGCGACAACAC--GAGAG 157 Query 466 CCTTCGCCTTCTCCAAGCTTCATACTCTTCCGACGATAAAGATTAGA-AGACATGAAGAA 524 || || | | | || || | | | ||| || | | |||||||||| Sbjct 158 ----CG------CC-A-C--CGTA-TC-T-C--C----AAGCTT-CATACACATGAAGAA 193 Query 525 CGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAGTTATCAGAGAA 584 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 194 CGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAATTATCGGAGAA 253 Query 585 AGCGATGTCGTTTCACGGCAGAGGAACAACGCCGTTATCAAATCCAGGCGAGCTTCGAAG 644 |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| Sbjct 254 AGCGATGTCGTTTCACGGCAGAGGAACAACGCCGGTATCGAATCCAGGTGAGCTTCGAAG 313 Query 645 ACCGAAAACGTTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGTACCGGAGACGGT 704 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 314 ACCGAAAACATTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGGACCGGTGACGGA 373 Query 705 TTCACTT-CCGCCACGTTTGACGAAACTTTTACTTAACGTGACGGTACAAGGAAGTTTAG 763 || || ||||| ||| | |||||||||||||| ||||| ||||| ||||||||||||| Sbjct 374 ATC-GTTCCCGCCGCGTCTAACGAAACTTTTACTCAACGTAACGGTGCAAGGAAGTTTAG 432 Query 764 GAGCCGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGATTTAATCGACGCCGCCG 823 |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| || Sbjct 433 GAGCTGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGGTCTAATCGACGCCG-CG 491 Query 824 -TTCGTCAGTACGTTAAAGAAGCTCGCCGGCCATTTTTACCGGAATCTGAACCGTCACGA 882 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 492 ATTCGTCAGTATGTTAAAGAAGCTCGCCGGCCATTTTTACCGAAATCTGAACCGTCAAGA 551 Query 883 TTTGATCTTCATTACTCGCAGTTTAGTCTTGAGAGTATTGTAAGAGACGAGAAGTTGATA 942 |||||||||||||| || ||||||||||| || ||||||| ||||||||||||| ||||| Sbjct 552 TTTGATCTTCATTATTCTCAGTTTAGTCTCGAAAGTATTGGAAGAGACGAGAAGCTGATA 611 Query 943 TCGCTAGGGTCGAGAAACTTTTTCTTATGTGGTCGGAAAGAGACCGGAGGGTTTATCGGC 1002 ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 612 TCGCTTGGATCGAGAAACTTTTTCTTATGTGGCCGGAAAGAGACCGGAGGCTTTATCGGC 671 Query 1003 TGTGGTTTATCGTCGGAATCTTGTTCTAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTT 1062 |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 672 GGTGGTTCATCGTCGGAATCTTGTTCGAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTT 731 Query 1063 CATTGGCTCAAATTTATGGGCTTCTAGAAGTTTTTA-TCATTTTGAATTATTGCTTTTT- 1120 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 732 CATTGGCTCAAATTTATGGGCTTCTAGAAGTTTTTAATCATTTTGGATTATTGCTTTTTT 791 Query 1121 CAAATTAGTTCCATTCTTTAGAAAAAGGATATAAAAAACA---------TCTG-T----- 1165 | ||||||||||||| ||||| ||||||||||| |||||| | || | Sbjct 792 CGAATTAGTTCCATT-TTTAGGAAAAGGATATATAAAACAAAAAAAAAATTTGGTAATCT 850 Query 1166 GTATATTATTT-CTATGTAGAAATGAAAATCATTAATTAGTGGTGTATAATGTATTTTAA 1224 |||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 851 GTATAT-ATTTTCTATGTAGAAATGAAAATCATTAATTTGTGGTGTATAATGTATTTTAA 909 Query 1225 TCAA-TTATATAC--C-AAGATGATTATATGAA-GTTCT 1258 |||| |||||||| | |||||||||||| ||| ||||| Sbjct 910 TCAAATTATATACTACCAAGATGATTATA-GAAAGTTCT 947 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47005556661 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5