BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28000.1
Length=2120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481708 jgi|Araly1|481708|fgenesh2_kg.4__768__AT2G28000.1 3267 0.0
Ahg335160 jgi|Araly1|335160|fgenesh1_pg.C_scaffold_1001725 176 6e-43
> Ahg481708 jgi|Araly1|481708|fgenesh2_kg.4__768__AT2G28000.1
Length=2019
Score = 3267 bits (1769), Expect = 0.0
Identities = 1951/2036 (96%), Gaps = 24/2036 (1%)
Strand=Plus/Plus
Query 1 AAAGAATCTTCTGGATCCTTTTTCTCTCAGCTACTCTCTCCATTTATCTAATAAACCCTA 60
|||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||
Sbjct 1 AAAGAATCTTCTGGATCC--TTTCT-TCAGCTA----CTCCATTTATC---TAAACCCTA 50
Query 61 ACCCCTCCTCCCACACTATTCGTTTACACTAACCACTTCCTTATCCACACCAATCCAGAA 120
| |||| || |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 51 A-CCCT-CT----CACTATTCGTTTTCACTAACCACTTCCTTATCCACACCAATCGAGAA 104
Query 121 CGTTCCTCAAAAAGCTCCCTCCTTTTCTCTCAAAATGGCGTCTGCAAACGCTCTCTCTTC 180
| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 105 CATTCCTCAAAAAGCTCGCTGCTTTTCTCTCAAAATGGCGTCCGCAAACGCTCTCTCTTC 164
Query 181 CGCCTCCGTCCTCTGTTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGG 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CGCCTCCGTCCTCTGCTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGG 224
Query 241 TCAGAGAGTTAGCTACAACAAGAGGACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAA 300
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 225 TCAGAGAGTTAGCTACAACAAGAGGACAAACAGACGTTTTAGCGTTAGAGCAAATGTAAA 284
Query 301 GGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGC 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 285 GGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTTCAAGCTGGTATTGATAAGCTTGC 344
Query 361 TGATTGTGTTGGTCTCACTCTTGGCCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGG 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 345 TGATTGTGTTGGTCTCACTCTTGGTCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGG 404
Query 421 AAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAATGC 480
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 405 AAGTCCTAAGGTGGTGAATGATGGTGTCACCATTGCTAGGGCTATTGAGTTACCTAATGC 464
Query 481 CATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCTGC 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 465 CATGGAAAATGCTGGTGCTGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCGGC 524
Query 541 TGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTT 584
Query 601 GAGCGTCACTTCTGGTGCGAATCCCGTTTCACTCAAGAGGGGAATTGATAAGACTGTTCA 660
||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 585 GAGTGTCACTTCTGGTGCAAATCCCGTTTCTCTCAAGAGGGGAATTGATAAGACCGTGCA 644
Query 661 AGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAAGGTCGTGATGACATCAG 720
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 645 AGGTCTGATTGAAGAGCTTCAGAAGAAAGCTAGGCCTGTGAAAGGTCGTGATGACATCAG 704
Query 721 AGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGC 764
Query 781 CATCGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCATCTTCTTTTGAGAC 840
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 765 CATTGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCGTCCTCTTTTGAGAC 824
Query 841 CACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGT 884
Query 901 TACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTATTGATCACTGATCA 960
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 885 TACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTTTTGATCACTGATCA 944
Query 961 GAAGATCACTGCGATCAAAGACATCATCCCTATTTTGGAGAAGACCACTCAGCTTCGTGC 1020
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 GAAGATCACTGCAATCAAAGACATCATTCCTATTTTGGAGAAGACCACTCAGCTTCGTGC 1004
Query 1021 TCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAA 1064
Query 1081 CAAGCTTCGTGGTGTCCTCAATGTTGTTGCCGTTAAAGCGCCAGGATTTGGAGAAAGAAG 1140
|||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1065 CAAGCTCCGTGGTGTCCTCAATGTCGTTGCAGTTAAAGCTCCAGGATTTGGAGAAAGAAG 1124
Query 1141 AAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACAT 1184
Query 1201 GAGCTTACTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGAT 1260
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAGCTTGCTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGAT 1244
Query 1261 TAGCAAAGATTCGACTACCCTCATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCG 1320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TAGCAAAGATTCGACTACCCTTATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCG 1304
Query 1321 GATTGCTCAGCTGAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCAGAGAAGCT 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1305 GATTGCTCAGCTAAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCTGAGAAGCT 1364
Query 1381 CGCTGAGAGAATTGCGAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAAC 1440
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TGCTGAGAGAATCGCTAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAAC 1424
Query 1441 TGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAGAACGCAACATTTGC 1500
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1425 TGAAACGGAGCTTGAGGACCGTAAGCTCCGTATCGAGGATGCAAAGAATGCAACATTTGC 1484
Query 1501 TGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGT 1544
Query 1561 TATTCCCGCCATTAAGGAGACTTTTGAGGATGCTGATGAACGTTTGGGAGCTGACATAGT 1620
|||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1545 TATTCCCGCCATCAAGGAGACGTTCGAGGATGCTGATGAACGTTTGGGAGCTGATATAGT 1604
Query 1621 ACAAAAGGCATTGCTGTCACCAGCTGCTCTTATTGCTCAGAACGCTGGAGTTGAAGGAGA 1680
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1605 ACAAAAGGCATTGCTGTCACCAGCTGCACTTATTGCCCAGAACGCTGGAGTTGAAGGAGA 1664
Query 1681 AGTTGTTGTGGAAAAGATTATGTTCAGCGATTGGGAG-AATGGGTACAACGCAATGACTG 1739
|||||||||||||||||||||||||||||| |||||| || ||||||||||| |||||||
Sbjct 1665 AGTTGTTGTGGAAAAGATTATGTTCAGCGAATGGGAGCAA-GGGTACAACGCGATGACTG 1723
Query 1740 ATACATATGAGAATCTGTTCGAAGCTGGAGTGATTGATCCGGCTAAAGTGACAAGATGTG 1799
|||| |||||||||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 1724 ATACGTATGAGAATCTGTTTGAAGCTGGAGTGATTGATCCCGCAAAAGTGACGAGATGTG 1783
Query 1800 CGCTACAGAACGCTGCTTCCGTAGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTTG 1859
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1784 CGCTACAGAACGCTGCTTCCGTTGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTCG 1843
Query 1860 ACAAACCGAAACCCAAGGCTCCTGCTGCTGCTGCT-C-C-TGAGGGTCTCATGGTGTAAT 1916
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1844 ACAAACCGAAACCCAAGGCTCCTGCTGCTGCTGCTGCTCCTGAGGGTCTCATGGTGTAAT 1903
Query 1917 CAAAACACAACATCTTATCATCACAATGGCATCTTT-GTCTTTTTGCACATTTGTCATCC 1975
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 1904 CAAAACACAACATCTTATCATCACAATGGCATATTTTGTCTTTTTGCACATTTGTTATCC 1963
Query 1976 CC-ATTT-ATCTGCAATGtttttcttttttGGGGGAATATGAGTAGTTTGTTAACA 2029
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964 CCCATTTTATCTGCAATGTTTTTCTTTTTTGGGGGAATATGAGTAGTTTGTTAACA 2019
> Ahg335160 jgi|Araly1|335160|fgenesh1_pg.C_scaffold_1001725
Length=612
Score = 176 bits (95), Expect = 6e-43
Identities = 137/157 (87%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1427 GTCGGAGCAGCAACTGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAG 1486
|||||||||||||||||||| ||||||||||||||| |||| | ||| || |||||| |
Sbjct 160 GTCGGAGCAGCAACTGAAACGGAGCTTGAGGACCGTGAGCTCCCTATAGATGATGCAGA- 218
Query 1487 AACGCA--ACATTTGCTGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGG 1544
||| || || |||||||||||||| || || |||||||||||||| ||||| ||| ||
Sbjct 219 AAC-CATGACTTTTGCTGCTATCGAAGACGGGATAGTTCCAGGTGGGGGTGCAACTTGGG 277
Query 1545 TGCATCTCTCCACTGTTATTCCCGCCATTAAGGAGAC 1581
|||||||||||||||||||||||||||| ||||||||
Sbjct 278 TGCATCTCTCCACTGTTATTCCCGCCATCAAGGAGAC 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79760973030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5