BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28120.1

Length=2052
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481697 jgi|Araly1|481697|fgenesh2_kg.4__757__AT2G28120.1         3090    0.0  


> Ahg481697 jgi|Araly1|481697|fgenesh2_kg.4__757__AT2G28120.1
Length=2016

 Score = 3090 bits (1673),  Expect = 0.0
 Identities = 1914/2029 (94%), Gaps = 21/2029 (1%)
 Strand=Plus/Plus

Query  32    TTACATATAAACAAATTCCCCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT  91
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1     TTACATATAAACAAATTCCTCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT  60

Query  92    CTGTACTCTAATCATTTATCTAGCTCTCTCA-----TTCTCTTATTCTGGATCAGCCAAG  146
             |||||||||||||||||||||  |||||| |     ||||||||||||||||||||||||
Sbjct  61    CTGTACTCTAATCATTTATCTCTCTCTCTTAGTTTGTTCTCTTATTCTGGATCAGCCAAG  120

Query  147   TTTCTCCATTTCTCAATCAAGAAAATCTTG-AA-ATACTCAAATCTTTTCAAGATTCACT  204
             |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct  121   TTTCTCCATTTCTCAATCAAGAAAATCTTGAAAGAGACTCAAATCTTTTCAAGATTCACT  180

Query  205   TTCAAAGATATCTTGATAATAGCCTCAAACTCTGGTTTCAAAGATGGGAAACGACGAGAC  264
             |||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||
Sbjct  181   TTCAAAGATATCTTGATATTAGCCTCACACTCGGGTTTCCAAGATGGGAAACGACGAGAC  240

Query  265   CGTACGATTCTTGATTCACTTCTTCAATGGAAGATGGTTCATGGTGTTTGCTTCGTTTCT  324
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  241   CGTACGATTCTTGATTCACTTCTTTAATGGAAGATGGTTCATGGTGTTTGCTTCGTTCCT  300

Query  325   CATCATGGCTTGCGCTGGAGCCACCTACCTTTTTGGTACTTACTCTAAAGATATCAAATC  384
             |||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct  301   CATCATGGCTTGCGCTGGAGCCACTTATCTTTTCGGGACTTACTCTAAAGATATCAAATC  360

Query  385   TACACTTGGTTACGATCAGACCACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC  444
             ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  361   TACACTTGGTTACGACCAGACAACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC  420

Query  445   AAACGTTGGTGTCTTGTCCGGTCTAATAGCTGAGGTCACACCGACTTGGTTCGTCCTCAC  504
              |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct  421   TAACGTTGGAGTCTTGTCCGGACTCATAGCAGAGGTCACACCGACTTGGTTCGTCCTCAC  480

Query  505   CATTGGCTCGGCGATGAACTTCGTCGGTTACTTTATGATCTGGCTTACCGTAACCGGCAA  564
             ||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct  481   CATTGGCTCGGCGATGAACTTCGTCGGTTACTTCATGATTTGGCTTACCGTCACAGGCAA  540

Query  565   AGTCGCTAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGTATAGGAGCCAACTCGCA  624
             ||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  541   AGTTGCGAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGCATAGGAGCTAACTCGCA  600

Query  625   GAACTTTGCAAACACAGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG  684
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601   GAACTTTGCAAACACCGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG  660

Query  685   AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGTGCAATCTTCACGCAGCT  744
             |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  661   AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGCGCAATCTTGACGCAGCT  720

Query  745   TTATTTTGCGATCTATGGACACGATTCCAAGTCTTTGATCTTGTTGATAGCATGGTTGCC  804
             ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  721   TTATTTTGCGATCTATGGACACGATTCAAAGTCTTTGATTTTGTTGATAGCATGGTTGCC  780

Query  805   TGCTGCGGTTTCTCTTGTGTTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG  864
             ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  781   TGCTGCGGTTTCTCTCGTATTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG  840

Query  865   GAATGAGCTTAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT  924
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841   GAATGAGCTCAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT  900

Query  925   TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCAAAAGCCGCTTATGCGGCTAG  984
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  901   TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCGAAAGCCGCTTATGCGGCAAG  960

Query  985   CGCTACGATATGTTGTGCTTTGCTTTTTGTGCCTCTTACGGTTTCCGTTAAGCAAGAGCT  1044
             ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |
Sbjct  961   CGCTACGATATGTTGTGTTTTGCTTTTTGTGCCTCTTACGGTTTCGGTTAAACAAGAGAT  1020

Query  1045  TGAAGTTTGGAACATGATGAAGTTACCTATCGAAGAGCCAAGCGAGGTCAAGGTTGAGAA  1104
              |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1021  GGAAGTTTGGAACATGAAGAAGTTACCTATCGAAGAGCCGAGCGAGGTCAAGGTTGAGAA  1080

Query  1105  ACCAAAGAAAGAACTTGATCTTGATCAGGACAAAGCCGCCAAGGTGAATGGAGAAGAGAA  1164
             ||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct  1081  ACCTAAGAAAGAACTTGATCTTGTTCAGGACAAAACCGCCAAGGTGGATGGAGAAGAGAA  1140

Query  1165  GGAGACAAAATCTTGTTTCTCGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC  1224
             |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1141  GGAGACGAAATCTTGTTTCTTGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC  1200

Query  1225  AATATTACAAGCATTGTTAAGCACCGACATGATAATCCTATTTGTCGCGACATTCTGTGG  1284
             |||||| ||||||||| | || |||||||||||||| |||||||| ||||||||||||||
Sbjct  1201  AATATTGCAAGCATTGCTCAGTACCGACATGATAATACTATTTGTGGCGACATTCTGTGG  1260

Query  1285  TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAGATAGGAGAATCCCTCGGCTA  1344
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  1261  TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAAATAGGAGAATCTCTCGGCTA  1320

Query  1345  CCCGAACCACACGGTTAGTTCCTTTGTGTCTCTAGTCAGCATATGGAACTACTTCGGTCG  1404
             |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct  1321  CCCGAACCACACGGTTAGCTCCTTTGTGTCTCTAGTCAGCATATGGAATTACTTTGGTCG  1380

Query  1405  AGTGTTCTCTGGCT-TTGTCTCGGAATACTTACTTGCAAAGTATAAATTACCCCGGCCGC  1463
              |||||||| || | ||||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct  1381  TGTGTTCTCAGG-TGTTGTCTCAGAATACTTGCTTGCCAAGTATAAGTTACCCCGGCCGC  1439

Query  1464  TTATGATGACATTAGTCCTCTTATTGAGTTGTGCTGGCCACCTTCTCATCGCGTTCCCGG  1523
             |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct  1440  TTATGATGACATTAGTCCTCTTATTGAGTTGTGCGGGTCACCTTCTCATCGCCTTCCCGG  1499

Query  1524  TACCAGGCTCGGTATATATAGCGTCAATTCTAATGGGATTCTCTTTCGGTGCACAACTTC  1583
             ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  1500  TACCAGGCTCGGTATATATAGCGTCGATTCTAATGGGATTCTCTTTTGGTGCACAACTTC  1559

Query  1584  CTCTGCTCTTTGCCATCATCTCAGAACTTTTTGGACTCAAGTACTACTCTACATTGTTCA  1643
             |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct  1560  CTCTGCTCTTTGCCATCATCTCAGAACACTTTGGACTCAAGTACTACTCTACATTGTTCA  1619

Query  1644  ATTGTGGACAACTTGCTAGCCCGCTCGGGTCTTACATCCTGAACGTTCGTGTCACGGGAA  1703
             ||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||
Sbjct  1620  ATTGTGGACAACTTGCTAGCCCGCTCGGGTCATACATCCTAAACGTCCGCGTCACGGGAA  1679

Query  1704  TGCTTTACGATAAAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACCCGAAAAGACG  1763
             |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1680  TGCTTTACGATAGAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACTCGAAAAGACG  1739

Query  1764  TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTGCCGTTTCTGATTTTGGCAG  1823
             |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct  1740  TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTACCGTTTGTGATTTTGGCAG  1799

Query  1824  CAGTAACGTTTTTTGGAGCACTTGTATCTTTGGGGCTAGCGATAAGGACGAGAGAGTTTT  1883
             |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  1800  CAGTAACGTTCTTTGGAGCACTTGTGTCTTTGGGTCTAGCGATAAGGACGAGAGAGTTTT  1859

Query  1884  ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTCCTGAGTCCGAGTCTGAATTAGTTC  1943
             ||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||    |
Sbjct  1860  ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTACTGAATCCGAGTCTGA-TT----C  1914

Query  1944  CTGATTCAAGAAAAGCTGTTGAATTTGTTGGTAAATAATTATCACACAAATTGTTTTTGT  2003
                |   | ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  1915  ---A---A-GAAAAGCTGTTGAATTTGTTGGTAAATAATTATCATACAAATTGTATTTGT  1967

Query  2004  TACTTGAATCATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC  2052
              |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1968  AACTTGAATTATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC  2016



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77170836370


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5