BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28120.1 Length=2052 Score E Sequences producing significant alignments: (Bits) Value Ahg481697 jgi|Araly1|481697|fgenesh2_kg.4__757__AT2G28120.1 3090 0.0 > Ahg481697 jgi|Araly1|481697|fgenesh2_kg.4__757__AT2G28120.1 Length=2016 Score = 3090 bits (1673), Expect = 0.0 Identities = 1914/2029 (94%), Gaps = 21/2029 (1%) Strand=Plus/Plus Query 32 TTACATATAAACAAATTCCCCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT 91 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTACATATAAACAAATTCCTCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT 60 Query 92 CTGTACTCTAATCATTTATCTAGCTCTCTCA-----TTCTCTTATTCTGGATCAGCCAAG 146 ||||||||||||||||||||| |||||| | |||||||||||||||||||||||| Sbjct 61 CTGTACTCTAATCATTTATCTCTCTCTCTTAGTTTGTTCTCTTATTCTGGATCAGCCAAG 120 Query 147 TTTCTCCATTTCTCAATCAAGAAAATCTTG-AA-ATACTCAAATCTTTTCAAGATTCACT 204 |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 121 TTTCTCCATTTCTCAATCAAGAAAATCTTGAAAGAGACTCAAATCTTTTCAAGATTCACT 180 Query 205 TTCAAAGATATCTTGATAATAGCCTCAAACTCTGGTTTCAAAGATGGGAAACGACGAGAC 264 |||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| Sbjct 181 TTCAAAGATATCTTGATATTAGCCTCACACTCGGGTTTCCAAGATGGGAAACGACGAGAC 240 Query 265 CGTACGATTCTTGATTCACTTCTTCAATGGAAGATGGTTCATGGTGTTTGCTTCGTTTCT 324 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 241 CGTACGATTCTTGATTCACTTCTTTAATGGAAGATGGTTCATGGTGTTTGCTTCGTTCCT 300 Query 325 CATCATGGCTTGCGCTGGAGCCACCTACCTTTTTGGTACTTACTCTAAAGATATCAAATC 384 |||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct 301 CATCATGGCTTGCGCTGGAGCCACTTATCTTTTCGGGACTTACTCTAAAGATATCAAATC 360 Query 385 TACACTTGGTTACGATCAGACCACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC 444 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 361 TACACTTGGTTACGACCAGACAACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC 420 Query 445 AAACGTTGGTGTCTTGTCCGGTCTAATAGCTGAGGTCACACCGACTTGGTTCGTCCTCAC 504 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 421 TAACGTTGGAGTCTTGTCCGGACTCATAGCAGAGGTCACACCGACTTGGTTCGTCCTCAC 480 Query 505 CATTGGCTCGGCGATGAACTTCGTCGGTTACTTTATGATCTGGCTTACCGTAACCGGCAA 564 ||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||| Sbjct 481 CATTGGCTCGGCGATGAACTTCGTCGGTTACTTCATGATTTGGCTTACCGTCACAGGCAA 540 Query 565 AGTCGCTAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGTATAGGAGCCAACTCGCA 624 ||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 541 AGTTGCGAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGCATAGGAGCTAACTCGCA 600 Query 625 GAACTTTGCAAACACAGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG 684 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GAACTTTGCAAACACCGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG 660 Query 685 AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGTGCAATCTTCACGCAGCT 744 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 661 AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGCGCAATCTTGACGCAGCT 720 Query 745 TTATTTTGCGATCTATGGACACGATTCCAAGTCTTTGATCTTGTTGATAGCATGGTTGCC 804 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 721 TTATTTTGCGATCTATGGACACGATTCAAAGTCTTTGATTTTGTTGATAGCATGGTTGCC 780 Query 805 TGCTGCGGTTTCTCTTGTGTTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG 864 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TGCTGCGGTTTCTCTCGTATTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG 840 Query 865 GAATGAGCTTAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT 924 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GAATGAGCTCAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT 900 Query 925 TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCAAAAGCCGCTTATGCGGCTAG 984 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 901 TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCGAAAGCCGCTTATGCGGCAAG 960 Query 985 CGCTACGATATGTTGTGCTTTGCTTTTTGTGCCTCTTACGGTTTCCGTTAAGCAAGAGCT 1044 ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| | Sbjct 961 CGCTACGATATGTTGTGTTTTGCTTTTTGTGCCTCTTACGGTTTCGGTTAAACAAGAGAT 1020 Query 1045 TGAAGTTTGGAACATGATGAAGTTACCTATCGAAGAGCCAAGCGAGGTCAAGGTTGAGAA 1104 |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1021 GGAAGTTTGGAACATGAAGAAGTTACCTATCGAAGAGCCGAGCGAGGTCAAGGTTGAGAA 1080 Query 1105 ACCAAAGAAAGAACTTGATCTTGATCAGGACAAAGCCGCCAAGGTGAATGGAGAAGAGAA 1164 ||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| Sbjct 1081 ACCTAAGAAAGAACTTGATCTTGTTCAGGACAAAACCGCCAAGGTGGATGGAGAAGAGAA 1140 Query 1165 GGAGACAAAATCTTGTTTCTCGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC 1224 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGAGACGAAATCTTGTTTCTTGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC 1200 Query 1225 AATATTACAAGCATTGTTAAGCACCGACATGATAATCCTATTTGTCGCGACATTCTGTGG 1284 |||||| ||||||||| | || |||||||||||||| |||||||| |||||||||||||| Sbjct 1201 AATATTGCAAGCATTGCTCAGTACCGACATGATAATACTATTTGTGGCGACATTCTGTGG 1260 Query 1285 TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAGATAGGAGAATCCCTCGGCTA 1344 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1261 TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAAATAGGAGAATCTCTCGGCTA 1320 Query 1345 CCCGAACCACACGGTTAGTTCCTTTGTGTCTCTAGTCAGCATATGGAACTACTTCGGTCG 1404 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1321 CCCGAACCACACGGTTAGCTCCTTTGTGTCTCTAGTCAGCATATGGAATTACTTTGGTCG 1380 Query 1405 AGTGTTCTCTGGCT-TTGTCTCGGAATACTTACTTGCAAAGTATAAATTACCCCGGCCGC 1463 |||||||| || | ||||||| |||||||| ||||| |||||||| ||||||||||||| Sbjct 1381 TGTGTTCTCAGG-TGTTGTCTCAGAATACTTGCTTGCCAAGTATAAGTTACCCCGGCCGC 1439 Query 1464 TTATGATGACATTAGTCCTCTTATTGAGTTGTGCTGGCCACCTTCTCATCGCGTTCCCGG 1523 |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct 1440 TTATGATGACATTAGTCCTCTTATTGAGTTGTGCGGGTCACCTTCTCATCGCCTTCCCGG 1499 Query 1524 TACCAGGCTCGGTATATATAGCGTCAATTCTAATGGGATTCTCTTTCGGTGCACAACTTC 1583 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1500 TACCAGGCTCGGTATATATAGCGTCGATTCTAATGGGATTCTCTTTTGGTGCACAACTTC 1559 Query 1584 CTCTGCTCTTTGCCATCATCTCAGAACTTTTTGGACTCAAGTACTACTCTACATTGTTCA 1643 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1560 CTCTGCTCTTTGCCATCATCTCAGAACACTTTGGACTCAAGTACTACTCTACATTGTTCA 1619 Query 1644 ATTGTGGACAACTTGCTAGCCCGCTCGGGTCTTACATCCTGAACGTTCGTGTCACGGGAA 1703 ||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||| Sbjct 1620 ATTGTGGACAACTTGCTAGCCCGCTCGGGTCATACATCCTAAACGTCCGCGTCACGGGAA 1679 Query 1704 TGCTTTACGATAAAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACCCGAAAAGACG 1763 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1680 TGCTTTACGATAGAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACTCGAAAAGACG 1739 Query 1764 TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTGCCGTTTCTGATTTTGGCAG 1823 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1740 TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTACCGTTTGTGATTTTGGCAG 1799 Query 1824 CAGTAACGTTTTTTGGAGCACTTGTATCTTTGGGGCTAGCGATAAGGACGAGAGAGTTTT 1883 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1800 CAGTAACGTTCTTTGGAGCACTTGTGTCTTTGGGTCTAGCGATAAGGACGAGAGAGTTTT 1859 Query 1884 ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTCCTGAGTCCGAGTCTGAATTAGTTC 1943 ||||||||||||||||||||||||||||||||||| |||| ||||||||||| || | Sbjct 1860 ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTACTGAATCCGAGTCTGA-TT----C 1914 Query 1944 CTGATTCAAGAAAAGCTGTTGAATTTGTTGGTAAATAATTATCACACAAATTGTTTTTGT 2003 | | ||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 1915 ---A---A-GAAAAGCTGTTGAATTTGTTGGTAAATAATTATCATACAAATTGTATTTGT 1967 Query 2004 TACTTGAATCATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC 2052 |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1968 AACTTGAATTATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC 2016 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77170836370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5