BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28190.1
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933211 jgi|Araly1|933211|scaffold_401199.1 1020 0.0
> Ahg933211 jgi|Araly1|933211|scaffold_401199.1
Length=703
Score = 1020 bits (552), Expect = 0.0
Identities = 649/694 (94%), Gaps = 13/694 (2%)
Strand=Plus/Plus
Query 41 AGCAGCAGCCATGGCTGCCACCAACACAAtcctcgcattctcatctccttctcgtcttct 100
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 11 AGCAGCAGCCATGGCTGCCACCAACACCATCCTCGCATTCTCATCACCTTCTCGTCTCCT 70
Query 101 cattcctccttcctccaa----tc--c-t-tcaac-tctccgttcctctttccGCGGCGT 151
|||||||||||||||||| || | | || | ||||||||||||||||||||||||
Sbjct 71 CATTCCTCCTTCCTCCAATCCCTCTTCTTCTCCCCATCTCCGTTCCTCTTTCCGCGGCGT 130
Query 152 CTCTCT---CAACAACAACAATCTCCACCGTCTCCAATCTGTTTCCTTCGCCGTTAAAGC 208
|||||| |||||||||||| |||||||||| |||||| ||||||||| || | |||
Sbjct 131 CTCTCTCAACAACAACAACAACCTCCACCGTCCCCAATCCGTTTCCTTCTCCACCAGAGC 190
Query 209 TCCGTCGAAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGG 268
||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 191 TCCATCGAAAGCCTTGACAGTTGTTTCCGCCGCGAAGAAAGCTGTTGCAGTGCTCAAAGG 250
Query 269 TACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGGTCCTACAACTGT 328
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 251 TACTTCCGTTGTCGAAGGAGTTGTTACTTTGACCCAAGATGATTCAGGTCCTACAACTGT 310
Query 329 GAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTCCATGAGTTTGG 388
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 GAATGTTCGTATCACCGGTCTCACTCCAGGGCCTCATGGATTTCACCTCCATGAGTTTGG 370
Query 389 TGATACAACTAATGGATGTATCTCAACAGGACCACATTTCAACCCTAACAACATGACACA 448
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 371 TGATACAACTAATGGATGTATCTCAACAGGACCACATTTTAACCCTAATAACATGACACA 430
Query 449 CGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGC 508
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 431 CGGAGCTCCTGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAACTGCCAATGC 490
Query 509 CGATGGCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTC 568
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 491 CGATGGCGTGGCAGAAACAACACTAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTC 550
Query 569 TGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGGGTGGCCA 628
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 551 TGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTTGGAAAGGGTGGCCA 610
Query 629 TGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTT 670
Query 689 GACGCCGCTCTAAGTCAGAGGCTAAGCAAGTACT 722
|||||||||||||||| | ||||||| ||| |||
Sbjct 671 GACGCCGCTCTAAGTCTG-GGCTAAGTAAGCACT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5