BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28200.1 Length=1158 Score E Sequences producing significant alignments: (Bits) Value Ahg481690 jgi|Araly1|481690|fgenesh2_kg.4__750__AT2G28200.1 1650 0.0 > Ahg481690 jgi|Araly1|481690|fgenesh2_kg.4__750__AT2G28200.1 Length=1120 Score = 1650 bits (893), Expect = 0.0 Identities = 1069/1149 (93%), Gaps = 31/1149 (3%) Strand=Plus/Plus Query 1 ACTGCctctcttctctcttctcttctgtctctctctTGTTAGTTCACTCCACATAATAAA 60 |||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||| | Sbjct 1 ACTGCCTCTCTTCTCTCTGCTC-TC--TCTCTTTCTTGTTAGTTCACTCCACATAATATA 57 Query 61 CACCAAAGATTTCATTCTCTTCTCCATAATTTCGAAgtttcttgaattgggtttgtttct 120 |||||| ||||||||||| ||||||| | |||||||||||||| |||||||||||||||| Sbjct 58 CACCAACGATTTCATTCTTTTCTCCACAGTTTCGAAGTTTCTTCAATTGGGTTTGTTTCT 117 Query 121 tgatttgtttcttgaattgggttttggtcttcttttcttACTATATTTGGATATGATGAT 180 ||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct 118 TGATTGGTTTCTTGAATTGGGTTTTAGTCTTCTTTTTTTACTATTTTTGGATATGATGAT 177 Query 181 GGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCG 240 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 178 GGGTCAAGATGAGGTTGGCAGTGATCAGACGCAAATCATAAAAGGGAAGCGTACGAAGCG 237 Query 241 ACAAAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACTTCAACAAGTTC 300 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 238 ACAGAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACCTCAACAAGTTC 297 Query 301 ATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAGATGAATACAACTCGGCGGTTTC 360 ||| ||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||| Sbjct 298 ATCAGCCGGTGGAAGCGGTGGAGGAAGAGCGGTTTCTGATGAATACAACTCGGCGGTTTC 357 Query 361 GTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCAT 417 Query 421 GTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAAATTCATCA 480 ||| |||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 418 GTTGGCTCGTGGAACGGTTCTTCCATCACCGGATCTCAAGAACTCGAGAAAAACTCATCA 477 Query 481 GAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGAC 540 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 478 GAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTATGAGTGTAAAACATGTAACCGGAC 537 Query 541 GTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCGAGCCACAAGAAGCCGAGGACGTC 600 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 538 GTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCAAGCCACAAGAAGCCGAGGACGTC 597 Query 601 GACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGG 660 ||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| Sbjct 598 GACAGAGGAAAAGACTAGATTACCCCTGATGCAACCCAAGTCTAGTTTGTCAGAAGAAGG 657 Query 661 GCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCAT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCAT 717 Query 721 CAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACTTCCGGGCA 780 ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 718 CAACAAGGCCAATAAAGTACACGAGTGTTCCATCTGTGGTTCTGAGTTCACTTCCGGTCA 777 Query 781 AGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGC 840 ||| || |||||||||||||||||||||||||||||| | |||| | | | Sbjct 778 AGCGCTTGGTGGTCACATGAGGCGGCACAGGACAGCC--A-CCAC------C---G---C 822 Query 841 AGCCACCGCAGAAGTAAGCAGAAACAGTACAGAGGAAGAGATTGAGATCAATATAGGCCG 900 | | | | || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 823 -G-----G-A-A-GTTAGCAGAAACAGTACAGAGGAAGAGATTGAGATAAATATAGGCCG 873 Query 901 TTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGA 960 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 874 TTCGATGGAACAGCAGAGGAAATATCTACCCTTGGATCTTAATCTACCAGCACCAGAAGA 933 Query 961 TGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 TGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGA 993 Query 1021 TTGTCATTACTAGTTGtttttttt--ACTACATAATATGATGAAATATTTGTGAATTCTT 1078 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 994 CTGTCATTACTAGTTGTTTTTTTTTTACTACATAATATGATGAA-TATTTGTGAATTCTT 1052 Query 1079 CTTACTTACTACTATATTGTTGATCATTGGAATTAttttttttttAAATTGAATCAAATA 1138 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1053 CTTACTTACTACTATATTGTTGATCATTGGAATTATTTTTTAAA-AAATTGAATCAAATA 1111 Query 1139 TTATCATTT 1147 ||||||||| Sbjct 1112 TTATCATTT 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43193264961 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5