BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28305.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481677 jgi|Araly1|481677|fgenesh2_kg.4__737__AT2G28305.1 1602 0.0
> Ahg481677 jgi|Araly1|481677|fgenesh2_kg.4__737__AT2G28305.1
Length=1051
Score = 1602 bits (867), Expect = 0.0
Identities = 964/1007 (96%), Gaps = 21/1007 (2%)
Strand=Plus/Plus
Query 3 CACAACGAGAAAGATAGATTCATCTTTCAATCtttttttAT-CTTAAAACAAAACTTTGT 61
|||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1 CACAACGAGAAAAATAGATTCATCTTTCAATCTTTTTTT-TCCTAAAAACAAAACTTTGT 59
Query 62 GTGAAGAGAAAGATGGAGATAGAATCAAAGTTCAAGAGAATATGTGTGTTTTGTGGAAGT 121
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 60 GTGAAGAGAGAGATGGAGATAGAACCAAAATTCAAGAGAATATGTGTGTTTTGTGGAAGT 119
Query 122 AGTGCTGGTAATAAAGT-CAGTTACAAAGATGCTGCTATCGAACTCGGAACCGAACTGGT 180
||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 120 AGTGCTGGTAATAAA-TCCAGTTACAAAGATGCTGCTATCGAGCTCGGAACTGAACTGGT 178
Query 181 ATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTC 238
Query 241 TCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCC 298
Query 301 AAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAG 358
Query 361 GAAAGCTGAAATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGAC 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAAGCTGAGATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGAC 418
Query 421 ACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGT 478
Query 481 GGGACTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGT 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGGATTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGT 538
Query 541 GGAAGAAGGTTTCATTTCACCAACTGCTCGTCATATCATTGTATCTGCTCCTTCTGCTAA 600
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 GGAAGAAGGTTTCATATCACCAACTGCTCGTCATATCATTGTCTCTGCTCCTTCTGCTAA 598
Query 601 AGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAA 658
Query 661 AAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATCTCAAGATGAAAAAG 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 AAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATTTCAAGATGAAAAAG 718
Query 721 GACTAATTAA-TTTCCTTAATTAGGACAACCCAATTGAATGAT-CTCTCCAAA-TTGGGA 777
|||||||||| |||| ||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 719 GACTAATTAAATTTCTTTAATTAGGACAACCCAATTGAATGTTTCTCTCCAAAATTGGGA 778
Query 778 CCCTCTTTATTGATTGTAAAACTTAGTCCAAGCAAACCGGGGAAAAAACAGATTGACTTT 837
||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 779 TCCTCTTTATTGATTGTAAAACGTAGTCCAAGCAAACCGG--AAAA--CAGATTGACTTT 834
Query 838 CTTCTTTTTGTGTAGTTGATTCTGTTGTTTAATGTAttttttttAGATTTTTAT-TCGGG 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 835 CTTCTTTTTGTGTAGTTGATTCTGTTGTTTAATGTATTTTTTTTAGATTTTTATCT-GGG 893
Query 897 aaaaaaaaaGAAAAGACAGAAAATATGTTGGtttt-tttAGTTTGGATTTT-GTAATATG 954
||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 894 AAAAA----GAAAAGACAGAAAATATGTTGGTTTTGTTTAGTTTGTATTTTTGTAATATG 949
Query 955 TCCCCCAACAAACAACTCAATTTTATAG--tttttctttctttcttt 999
||||| ||| ||||||||||| ||| | |||||||||||||||||
Sbjct 950 TCCCCTAACGAACAACTCAATCTTAGGGGGTTTTTCTTTCTTTCTTT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5