BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28350.1 Length=2265 Score E Sequences producing significant alignments: (Bits) Value Ahg481671 jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1 3121 0.0 > Ahg481671 jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1 Length=2220 Score = 3121 bits (1690), Expect = 0.0 Identities = 1976/2109 (94%), Gaps = 40/2109 (2%) Strand=Plus/Plus Query 1 ATGGAGCAAGAGAAAAGCTTGGATCCACAACTATGGCATGCTTGTGCAGGATCAATGGTT 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGAGCAAGAGAAAAGCTTGGATCCACAACTATGGCATGCTTGTGCTGGATCAATGGTT 60 Query 61 CAAATCCCTTCACTGAATTCAACGGTTTTTTACTTCGCTCAAGGCCACACAGAGCACGCT 120 ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 61 CAAATCCCTTCTGTGAATTCAACGGTTTTTTACTTCGCCCAAGGTCACACAGAGCATGCT 120 Query 121 CACGCGCCTCCTGATTTTCACGCGCCGCGCGTTCCACCTCTTATCCTCTGTCGTGTCGTC 180 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 CACGCGCCTCCTGATTTCCACGCGCCGCGCGTTCCACCGCTTATCCTCTGTCGTGTCGTC 180 Query 181 TCCGTGAAGTTCCTCGCCGACGCTGAAACAGACGAAGTTTTTGCTAAAATTACGCTTTTG 240 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 TCTGTGAAGTTCCTCGCCGACGCTGAAACAGACGAAGTTTTCGCTAAAATTACGCTTTTG 240 Query 241 CCACTTCCGGGAAACGACTTGGATCTAGAAAACGACGCCGTTTTGGGTCTAACTCCTCCT 300 ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 241 CCACTACCGGGAAACGACTTGGATCTAGAGAACGACGCCGTTTTGGGTCTGACTCCTCCG 300 Query 301 TCTTCTGACG-----G-TAACGGTAACGGTAAAGAGAAACCGGCGTCTTTCGCTAAAACG 354 |||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 301 TCTTCTGACGTTAACGTTAACGGTAACGGTAACGAGAAACCGGCGTCTTTTGCTAAAACG 360 Query 355 TTAACGCAGTCTGACGCTAATAACGGCGGTGGTTTCTCCGTTCCACGTTATTGCGCCGAG 414 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 361 TTAACGCAGTCTGACGCTAATAACGGCGGTGGTTTCTCTGTTCCACGTTATTGCGCTGAG 420 Query 415 ACGATTTTCCCGCGGCTTGATTACTCGGCGGAGCCACCGGTTCAAACCGTGATTGCTAAA 474 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 421 ACGATTTTCCCGCGGCTTGATTACACGGCGGAGCCACCGGTTCAAACCGTGATTGCTAAA 480 Query 475 GACATCCACGGCGAGACTTGGAAATTCCGGCATATTTACAGAGGAACACCTCGCCGTCAT 534 || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 GATATTCACGGCGAGACTTGGAAATTCCGGCATATTTACAGAGGAACGCCTCGCCGTCAT 540 Query 535 CTCCTAACCACCGGTTGGAGCACTTTCGTTAACCAGAAGAAACTAATCGCCGGAGACTCA 594 ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| Sbjct 541 CTCTTAACCACCGGTTGGAGCACTTTCGTTAACCAAAAGAAACTAATCGCCGGGGATTCA 600 Query 595 ATCGTCTTCCTCCGTTCTGAATCCGGTGACCTCTGCGTCGGAATCCGCCGCGCTAAACGC 654 ||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 601 ATCGTTTTCCTCCGTTCTGAATCCGGTGACCTCTGCGTTGGAATCCGTCGTGCTAAACGC 660 Query 655 GGCGGTCTCGGATCTAAC--GC-AGGATCCGACAATCCTTACCCTGGATTCTCCGGTTTC 711 || ||||||||||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 661 GGTGGTCTCGGATCTACCGGGCTAGGATCCGACAATCCTTACCCTGGATTCTCCGGTTTC 720 Query 712 CTCCGTGACGACGAGTCAACAACAACAACATCGAAGCTAATGATGATGAAACGCAACGGA 771 ||||||||||| || |||| |||||||||||||||| |||||||||||||||||||| Sbjct 721 CTCCGTGACGATGA---AACATCAACAACATCGAAGCTTATGATGATGAAACGCAACGG- 776 Query 772 AACAACGACGGAAACGCCGCGGCTACAGGGAGGGTTAGAGTAGAAGCAGTAGCGGAAGCG 831 | |||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||| Sbjct 777 -A-AACGACGGAAACGCGGCGGCTGGAGGGAGGGTTAGAGTGGAAGCAGTGGCGGAAGCG 834 Query 832 GTGGCGCGTGCAGCGTGTGGACAAGCGTTTGAGGTTGTTTATTATCCACGCGCTAGTACA 891 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 GTGGCGCGTGCAGCGTGTGGACAAGCGTTTGAGGTTGTTTATTATCCACGCGCTAGTACA 894 Query 892 CCGGAGTTTTGCGTAAAAGCAGCTGATGTTAGATCAGCAATGAGGATAAGATGGTGTAGT 951 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 895 CCGGAGTTTTGCGTTAAAGCAGCTGATGTGAGATCAGCAATGAGGATAAGATGGTGTAGT 954 Query 952 GGTATGCGTTTTAAAATGGCGTTTGAAACAGAGGATTCTTCTAGAATCAGTTGGTTTATG 1011 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 955 GGTATGCGTTTTAAAATGGCGTTTGAAACAGAGGATTCTTCAAGAATCAGTTGGTTTATG 1014 Query 1012 GGTACTGTCTCCGCCGTTCAAGTCGCTGATCCAATTCGTTGGCCTAATTCACCATGGCGT 1071 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1015 GGTACTGTCTCCGCCGTTCAAGTCGCTGATCCTATTCGTTGGCCTAATTCACCATGGCGT 1074 Query 1072 CTCCTTCAGGTAGCTTGGGACGAACCGGATTTGTTACAAAACGTTAAGCGGGTTAGTCCG 1131 |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 1075 CTCCTTCAGGTAGCGTGGGACGAACCGGATTTGTTGCAAAATGTTAAGCGGGTAAGTCCG 1134 Query 1132 TGGTTAGTCGAATTGGTATCGAACATGCCTACAATACATTTATCTCCATTCTCTCCGAGG 1191 |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| Sbjct 1135 TGGTTAGTCGAATTGGTATCGAACATGCCTGCAATCCATTTATCTCCTTTCTCTCCGAGG 1194 Query 1192 AAGAAGATTAGGATTCCGCAGCCATTTGAGTTTCCATTCCACGGTACTAAATTCCCGATT 1251 ||||||||| | || |||||||| ||||| ||||| ||| ||||||| |||||||||||| Sbjct 1195 AAGAAGATTCGAATACCGCAGCCTTTTGAATTTCCTTTCGACGGTACCAAATTCCCGATT 1254 Query 1252 TTCTCCCCGGGATTCGCCAACAATGGCGGTGGCGAGTCCATGTGTTATCTGTCAAACGAC 1311 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1255 TTCTCCCCGGGATTCGCCAACAATGGCGGTGGCGAATCCATGTGTTATCTGTCAAACGAC 1314 Query 1312 AACAATAATGCTCCTGCAGGAATACAGGGAGCCAGGCAAGCTCAACAACTCTTCGGATCA 1371 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1315 AACAATAATGCTCCTGCAGGGATACAGGGAGCCAGGCAAGCTCAACAACTCTTCGGATCA 1374 Query 1372 CCATCTCCGTCTTTGTTGTCTGATCTCAATCTTAGTAGTTACACCGGTAACAACAAGTTA 1431 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1375 CCATCTCCGTCTTTGTTGTCTGATCTCAATCTTAGTAGTTACTCCGGTAACAA---GTTA 1431 Query 1432 CATTCTCCGGCGATGTTTCTATC-GAGTTTCAACCCGAGGCATCATCATTAT--CA--G- 1485 || ||||||||||||||||| || | |||| ||||||||||||||| || || || | Sbjct 1432 CAATCTCCGGCGATGTTTCTGTCCG-GTTTTAACCCGAGGCATCATTATGATAACATTGT 1490 Query 1486 G-CT----AG----GG-ATAGTGAGAATAGTAATAACATTTCGTGTTCTTTAACTATGGG 1535 | || || || ||| |||||||||||||||||||||||| |||||||| ||||| Sbjct 1491 GTCTCGTCAGACTAGGGATACTGAGAATAGTAATAACATTTCGTGCTCTTTAACGATGGG 1550 Query 1536 GAATCCTGCTATGGTTCAGGATAAGAAGAAGTCTGTTGGTTCGGTTAAGACTCATCAGTT 1595 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 1551 GAATCCTGCTATGGTTCAGGACAAGAAGAAGTCTGGTGGTTCGGTTAAGACTCATCAGTT 1610 Query 1596 CGTGTTGTTCGGTCAACCGATTTTAACCGAACAGCAAGTTATGAACCGAAAACGGTTTTT 1655 | |||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| Sbjct 1611 CTTGTTGTTCGGCCAACCTATTTTAACCGAACAACAAGTTATGAACCGAAAACGGTCTTT 1670 Query 1656 GGAAGAAGAGGCGGAAGCGGAGGAGGAGAAAGGTTTAGTGGCTCGTGGGTTAACATGGAA 1715 ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct 1671 GGAAGAAGAGGCGGAAGCGCAGGAGGAGAAAGGTTTAGCGGCTCGTGGATTAACATGGAA 1730 Query 1716 TTATAGTTTGCAAGGACTTGAGACGGGTCATTGTAAAGTTTTCATGGAATCTGAGGATGT 1775 ||| |||| || |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1731 TTACGGTTTTCAGGGACTTGAAACGGGTCATTGCAAAGTTTTCATGGAATCTGAGGATGT 1790 Query 1776 TGGACGCACACTCGATCTCTCGGTTATTGGCTCGTACCAAGAATTGTACCGGAAATTGGC 1835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1791 TGGACGCACACTCGATCTCTCGGTTATTGGCTCGTACCAAGAATTGTACCGGAAATTGGC 1850 Query 1836 TGAGATGTTTCATATAGAAGAGAGGTCGGATTTGTTGACTCATGTTGTGTACCGGGATGC 1895 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1851 TGAGATGTTTCATATAGAAGAGAGGTCGGATTTGTTGACTCATGTTGTGTACCGGGACGC 1910 Query 1896 AAATGGTGTTATCAAACGTATTGGAGACGAACCTTTCAGTGATTTCATGAAAGCAACTAA 1955 |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| || Sbjct 1911 AAATGGTGCTATCAAACGCATTGGAGACGAACCTTTCAGTGATTTCATGAAATCAAC-AA 1969 Query 1956 A-CGGCTAACAATCAAGATGGATATTGGTGGCGACAACGTGAGAAAGACGTGGATAACCG 2014 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1970 AGCGGCTAACAATCAAGATGGATATTGGTGGCGACAACGTGAGGAAGACGTGGATAACCG 2029 Query 2015 GAATCAGGACTGGTGAAAATGGTATAGACGCTTCTACGAAGACTGGTCCGCTCAGCATCT 2074 |||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||| Sbjct 2030 GAATCAGGACTGGTGAAAATGGTATAGACGCTAC-A--AAGACCGGTCCGCTCAGCATCT 2086 Query 2075 TCGCTTGAA 2083 ||||||||| Sbjct 2087 TCGCTTGAA 2095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85284058555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5