BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28370.1 Length=1121 Score E Sequences producing significant alignments: (Bits) Value Ahg481668 jgi|Araly1|481668|fgenesh2_kg.4__728__AT2G28370.1 1389 0.0 > Ahg481668 jgi|Araly1|481668|fgenesh2_kg.4__728__AT2G28370.1 Length=957 Score = 1389 bits (752), Expect = 0.0 Identities = 906/977 (93%), Gaps = 24/977 (2%) Strand=Plus/Plus Query 84 aaaaccatttccacgatcttcttcttcttcttcCCTCAAATATAGCTTAGGATTTTCTTA 143 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 AAAACCATTTCCACGATCTTCTTCTTCTTCTTCCCTCAAATATAGCTTAGG-GTTTCTTA 59 Query 144 ATTTCCTCTACCCAAG--CTCCATGGCTGCTTTCAATTTCTTCCTCTCTTCTTAATTCTC 201 |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct 60 ATTTCCTCTACCCAAGCTCTCCATGGCTGCTCGCAATTTCTTCCTCTCTTCTTGATTCTC 119 Query 202 TCAGGTAGGGGAGATTTGAGTAGTAGTAGATTGTTAGATTTGTAATTCAGCTATTGGTGA 261 |||||||||||||||||||||| || |||||| || |||||| | ||||||||||||| | Sbjct 120 TCAGGTAGGGGAGATTTGAGTACTACTAGATTATTGGATTTGGATTTCAGCTATTGGT-A 178 Query 262 AGAGGAAGGGAGAGAGAGATGTGTTGAATTGGTTGAGTTTGGTGGAGGAAAGAAGAAGAA 321 | | | | || |||||||||||||||||||||||| |||||||||| | | | ||||| Sbjct 179 A-A-G-A-GG-GAGAGAGATGTGTTGAATTGGTTGTGTTTGGTGGA-G---G-A-AAGAA 227 Query 322 GAAATGAATGTGAGCCATGCATCGGTACATCCAGTGGAAGATCCTCCTGCAGCTGCGACG 381 |||||||||||||||||||||||||| ||||| || ||||| ||| || |||| ||| Sbjct 228 GAAATGAATGTGAGCCATGCATCGGTTCATCCGGTTGAAGA---TCC-GC--CTGCTACG 281 Query 382 GAAGTAGAGAATCCGCCTCGGGTGAGGATGGATGATATGGAAGGAATGCCTGGAACATTG 441 ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 282 GAAGTTGATAATCCGCCACGGGTGAGGATGGATGATATGGAAGGCATGCCTGGAACTTTG 341 Query 442 CTTGGTCTTGCATTGCGtttttttCAGTTCTTGTTTGCTGCTGCTGCTCTTTGTGTCATG 501 ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 342 CTTGGGCTTGCATTGCGTTTTTTTCAGTTCTTGTTTGCAGCTGCTGCGCTTTGTGTCATG 401 Query 502 GCTTCTACTAGTGATTTTCCTTCCGTTACCGCCTTCTGCTACCTAGTTGCAGCTACTGGT 561 ||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct 402 GCTACTACTAGTGATTTCCCTTCCGTTACCGCCTTCTGTTACCTAGTTGCAGCCACTGGC 461 Query 562 CTGCAGAGCTTGTGGAGTCTTGCACTAGCCATGGTTGACGTCTATGCCATTATGGTCAAA 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 CTGCAGAGCTTGTGGAGTCTTGCACTAGCCATGGTTGACGTCTATGCCATTATGGTCAAA 521 Query 622 CGCTCTCTACAGAACCGTCGACTTGTGAGCTTGTTTGCAATTGGTGATGGGGTGACATCG 681 || || |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 522 CGTTCCCTACAGAACCGTCGACTTGTGAGCTTGTTTGCGATTGGTGATGGGGTGACATCA 581 Query 682 ACGCTGACTTTTGCAGCAGCTTGTGCATCGGCAGGCATAACGGTTCTAATAGACAACGAT 741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 ACGCTGACTTTTGCAGCAGCTTGTGCATCGGCAGGCATAACGGTTCTAATAGACAACGAT 641 Query 742 CTGAATAGCTGCGCACAAAACCACTGTGTTCAGTTTGAAACATCAACGGCATTAGCTTTC 801 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 642 CTGAATAGCTGCGCACAAAACCATTGTGTTCAGTTTGAAACATCAACAGCATTAGCTTTC 701 Query 802 ATAAGCTGGTTCGCTGCTTTGCCTTCGTTTCTCTTCAATTTCTGGTCTCTTGCATCCCGT 861 ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 702 ATAAGCTGGTTTGCTGCTTTGCCCTCTTTTCTCTTCAACTTCTGGTCTCTTGCATCCCGT 761 Query 862 TGACACGATACTGCTCAGCAAGATGTGTTTTCATGGTGTGT-TTTTCGGTGTATAGTGAC 920 ||||| || |||| || |||||||||||||||||||||| | |||||||||||||||||| Sbjct 762 TGACATGACACTGTTCCGCAAGATGTGTTTTCATGGTGTTTATTTTCGGTGTATAGTGAC 821 Query 921 TGATTTTTCTTCTTCTTTCTTGTTTTGGGTTTGGAACCAACTTTCTTCAAACCCAATACT 980 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 TGATTTATCTTCTTCTTTCTTGTTTTGGGTTTGGAACCAACTTTCTTCAAACCCAATACT 881 Query 981 TGGAAACTGGGAATTGTTTTGTAGACGACGACCTTATTCATTTTGTTGTACAATGA-AAC 1039 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 882 GGGAAACTGGGAATTGTTTTGTAGACGACGACCTTATTCATTTTGTTGTACAATGACAAG 941 Query 1040 TATCTGGTCGGCTTTGT 1056 || ||||||||||||| Sbjct 942 -ATTTGGTCGGCTTTGT 957 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41782717032 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5