BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28400.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481665 jgi|Araly1|481665|fgenesh2_kg.4__725__AT2G28400.1 1088 0.0
> Ahg481665 jgi|Araly1|481665|fgenesh2_kg.4__725__AT2G28400.1
Length=763
Score = 1088 bits (589), Expect = 0.0
Identities = 688/733 (94%), Gaps = 17/733 (2%)
Strand=Plus/Plus
Query 30 TTCATTTCTTCTTCTTCTTGAAATGGCGACGAGCAAGTGCTACTATCCACGGCCAAGCCA 89
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 35 TTCATTTCTTCTCCTTCTTCAAATGGCGACGAGCAAGTGCTACTATCCACGGCCAAGCCA 94
Query 90 CCGTTTCTTCACCACTGACCAACACGTCACCGCCACTTCCGATTTCGAGCTAGACGAATG 149
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 95 CCGTTTCTTCACCACAGACCAACACGTCACCGCCGCTTCCGATTTCGAGCTAGACGAATG 154
Query 150 GGATCTTTTCAATACCGGTTCAGATTC-CTCTTCAAGTTTCAGCTTTAGTGACCTTACAA 208
||| |||| |||||||||||||||||| | |||||| ||||||||||||||| |||||||
Sbjct 155 GGAACTTTACAATACCGGTTCAGATTCAC-CTTCAAATTTCAGCTTTAGTGATCTTACAA 213
Query 209 TCACATCCGGTCGAACCGGAACTAACCGGCAAATTCACGGTGGTTCT-G--AC---TCCG 262
||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||
Sbjct 214 TCACATCCGGTCGAACCGGAACTAACCGGAAAATTCACGGTGGTTCTGGTTCCGGTTCCG 273
Query 263 GTAAAGCTGCGTCTTCTCTACCGGTTAACGTACCGGACTGGTCTAAGATTCTTGGAGACG 322
||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 274 GTACAGCTGCGTCTTCGCTTCCGGTTAACGTACCGGACTGGTCTAAGATTCTTGGAGATG 333
Query 323 AGAGTCGACGACAGAGGA-AGATTTCGAATGAGGAAGAAGTTGACGGAGATGAAATTTTA 381
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| |
Sbjct 334 AGAGTCGACGACAGA-GACAGATTTCGAATGAGGAAGAAGTCGACGGAGATGAAATTTCA 392
Query 382 TGCGGCGAAGGTACACGGCGAGTTCCACCGCATGAATTGCTTGCGAACCGGAGGATGGCT 441
||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 393 TGCGGCGGAGGAACACGGCGTGTTCCGCCGCATGAATTGCTTGCGAACCGGAGGATGGCT 452
Query 442 TCGTTTTCGGTTCATGAAGGTGCTGGGAGGACTTTGAAAGGAAGAGATCTGAGTAGGGTG 501
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 453 TCATTTTCGGTTCATGAAGGTGCTGGGAGGACATTGAAAGGAAGAGATCTGAGTAGGGTG 512
Query 502 CGAAATACTATTTTTAAAATTAGAGGGATCGAAGATTAATTATCTTTTGGGTACTTCTTT 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CGAAATACTATTTTTAAAATTAGAGGGATCGAAGATTAATTATCTTTTGGGTACTTCTTT 572
Query 562 TAAATCTTTGTTTAAATTGGGGGTTACATATAGAAATATGAGGAGCTTAAATCGAAATTT 621
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 573 TAA-TCTTTGTTTAAATTGGGGGTTACATATAGAAATATGAGGGGCTTAAATCGAAATTT 631
Query 622 GTAAGAGCTGtttttttt--GGAATTATTTTAGTTTCTGGATTCACATTAAGTGtttttt 679
|||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||
Sbjct 632 GTAAGAGCTGTTTTTTTTTTGGAATTATTTTAGTTTCTGGATTCGCATTTCGTCTTTTTT 691
Query 680 ttAACTTGA---GATTGTATTGAAATTTTGAGACACCAAATATGAAAATTGACTTGGTAT 736
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TTA-CTTAAAAAGATTGTATTGAAATTTTGAGACACCAAATATGAAAATTGACTTGGTAT 750
Query 737 TTCTTTTATAATT 749
|||||||||||||
Sbjct 751 TTCTTTTATAATT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5