BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28500.1 Length=765 Score E Sequences producing significant alignments: (Bits) Value Ahg481760 jgi|Araly1|481760|fgenesh2_kg.4__820__AT2G28500.1 1131 0.0 Ahg311843 jgi|Araly1|311843|fgenesh1_pm.C_scaffold_1000623 313 1e-84 > Ahg481760 jgi|Araly1|481760|fgenesh2_kg.4__820__AT2G28500.1 Length=764 Score = 1131 bits (612), Expect = 0.0 Identities = 717/767 (93%), Gaps = 9/767 (1%) Strand=Plus/Plus Query 1 ATCAAATAAGCCCCCAAAATATTTTGAGAATCATGCTAAAGATGGAGATTAACGGTGGGG 60 |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATCAGATAAGTCCCCAAAATATTTTGAGAATCATGCTAAAGATGGAGATTACCGGTGGGG 60 Query 61 TCGCTACACCTACTGC-T---TC--CGCCGTCGCCAAGGTGACAGAAACCACCACTCCCG 114 | |||||||||||||| | || ||||||||||| ||| ||||||||| ||||| | Sbjct 61 TTGCTACACCTACTGCTTCCGTCGTCGCCGTCGCCACCGTGGCAGAAACCAAAACTCCTG 120 Query 115 TTAACTCTCCTTCTCCCACTTCTTCACCTCCGCCGCCTCCTTCGCCGCAACAGCCGCCAC 174 ||| |||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct 121 TTACCTCTCCTTCTCCTACCTCTTCACCTCCACCGCCACCTTCCCCGCAGCAGCCAACAC 180 Query 175 AACCACCGGTTGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGCGGCGGCGGTGCGCCG 234 ||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 181 CACCGCCGGTGGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGAGGCGCCGGTGCGCCG 240 Query 235 ATAAATGTGTTTTGGCACCGTACTTTCCTCCTACGGACCCGGCGAAGTTCACAATCGCTC 294 | ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 241 AGAAATGTGTTTTGGCACCGTACTTTCCTCCGACGGATCCGGCGAAGTTCACTATCGCTC 300 Query 295 ACCGTGTCTTTGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTTCCAGAATCGCAAA 354 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 301 ACCGTGTCTTCGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTCCCGGAATCGCAAA 360 Query 355 GAACAGATGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTT 414 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAACTGATGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTT 420 Query 415 ACGGATGTGCGGGTGCAATTTATCATTTGCAGAGACAAGTGAGTGAGCTTCAAGCACAAC 474 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 421 ACGGATGTGCGGGTGCAATTTACCATTTGCAGAGACAAGTGAGCGAGCTTCAAGCACAAC 480 Query 475 TTGCAAAAACTCAAGTAGAGTTAGTAGGCATGCAACTCCAAAGATCAAGTCTACTAGAAT 534 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTGCGAAAACTCAAGTAGAGTTAGTAGGCATGCAACTCCAAAGATCAAGTCTACTAGAAT 540 Query 535 TGATATATAATATGGAGCAAACAAAGTTGTCAGTACAAGAGCAAGGACAACAGAAGATGT 594 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 TGATATATAATATGGAGCAAACAAAGTTGTCAGCACAAGAGCAAGGACAACAGAAGATGT 600 Query 595 CCTTTGAGAGTTCATTTGAAAGCGGCGATGAGTTCATTAGTAGCCCGGACGAAGAGAGCA 654 |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 601 CCTTCGAGAGTTCGTTTGAAAGCGGCGATGAGTTCATTAGTAGCCCCGACGAAGAGAGCA 660 Query 655 ATGATTTGGGGTTCCTTGAGGACAACAACAACAACAATAATTCATCAATGTCGTGGTGGG 714 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 661 ATGATTTGGGATTCCTTGAGGACAACAACAACAA---TAATTCATCAATGTCGTGGTGGG 717 Query 715 ATCCTCTTTGGACATGATCATAACTTATGGTATTATTAGCTCACTTT 761 |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 718 ATCCTCTTTGGACATGATCATAACTTATGGTATTATTAGCTCGCTTT 764 > Ahg311843 jgi|Araly1|311843|fgenesh1_pm.C_scaffold_1000623 Length=573 Score = 313 bits (169), Expect = 1e-84 Identities = 308/376 (82%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 182 GGTTGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGCGGCGGCGGTGCGCCGATAAATG 241 ||| ||||| ||||| || || |||||||| || ||| ||||||| ||||| || | ||| Sbjct 84 GGTGGTACTCAGCCCATGCGCTGCTTGCAAAATCTTGAGGCGGCGTTGCGCAGAGAGATG 143 Query 242 TGTTTTGGCACCGTACTTTCCTCCTACGGACCCGGCGAAGTTCACAATCGCTCACCGTGT 301 ||||||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 144 CGTTTTGGCACCGTACTTCCCTCCAACGGATCCAGCCAAATTCACTATCGCCCACCGCGT 203 Query 302 CTTTGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTTCCAGAATCGCAAAGAACAGA 361 |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 204 TTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAACTTCCAGAATCACAAAGAACTGA 263 Query 362 TGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTTACGGATG 421 ||| || || || ||||| |||||||||| |||| | || |||||||| || || ||||| Sbjct 264 TGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTCGAATTAGAGATCCAGTGTATGGATG 323 Query 422 TGCGGGTGCAATTTATCATTTGCAGA-GACAAGTGAGTGAGCTTCAAGCACAACTTGCAA 480 ||| ||| | || || ||| | || | ||||||||||||| || |||||||||||||||| Sbjct 324 TGCAGGTTCTATATACCATCTACA-ACGACAAGTGAGTGAACTCCAAGCACAACTTGCAA 382 Query 481 AAACTCAAGTAGAGTTAGT-AGGCATGCAACTCCAAAGATCAAGTCTACTAGAATTGA-T 538 || ||||||| ||| | || | |||||| | |||||||||| | ||||||| || | | Sbjct 383 AATCTCAAGTGGAGATGGTGAAT-ATGCAATTTCAAAGATCAAATTTACTAGAGTT-ACT 440 Query 539 ATATAATATGGAGCAA 554 ||||| ||||| ||| Sbjct 441 TTATAAAATGGACCAA 456 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28210958580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5