BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28550.3
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481765 jgi|Araly1|481765|fgenesh2_kg.4__825__AT2G28550.1 1184 0.0
> Ahg481765 jgi|Araly1|481765|fgenesh2_kg.4__825__AT2G28550.1
Length=1686
Score = 1184 bits (641), Expect = 0.0
Identities = 825/907 (91%), Gaps = 39/907 (4%)
Strand=Plus/Plus
Query 199 TGATTATGTAATCGTTGTTGCT-GTAGAAGACGATCTCTAACAACTGATTCCTTCATCAT 257
|||||||||||||||||||| | || ||||||||||||| | ||||||| | ||||||
Sbjct 95 TGATTATGTAATCGTTGTTGTTAGTTGAAGACGATCTCTGA-TACTGATT-C--CATCAT 150
Query 258 CACCTTCGCTAGATTTGTAATTTTCAGAGCTTGAGATGTTGGATCTTAACCTCAACGCTG 317
||||||| || | | | || ||||||||||||||||||| ||| ||| ||
Sbjct 151 CACCTTCTCT--A---G--A--TT------TTGAGATGTTGGATCTTAATCTCGACGTTG 195
Query 318 ATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAGACATCAGACA 377
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 196 ATTCTCCCGAGTCGACTCAGTACGGTGGTGACTCATACTTAGATCGGCAAACATCAGACG 255
Query 378 ACTCCGCCGGGAATCGAGTGGAAGAGTCCGGTACATCGACGTCGTCAGTTATCAATGCCG 437
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 256 GCTCCGCCGGGAATCGAGTGGAAGAGTCCGGTACATCGACGTCGTCTGTTATCAATGCCG 315
Query 438 ATGGAGACGAAGACTCTTGCTCTACTCGAGCTTTCACTCTCAGTTTCGATATTTTAAAAG 497
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 316 ATGGTGACGAAGACTCTTGCTCCACTCGAGCTTTCACTCTCAGTTTCGATATACTAAAAG 375
Query 498 TCGGAAGTAGTAGCGGCGGAGACGAAAGCCCCGCCGCTTCAGCTTCCGTTACTAAAGAGT 557
|||||||||||||||||||||| |||| || ||| || || |||||||||||||
Sbjct 376 TCGGAAGTAGTAGCGGCGGAGATGAAA---CCTCCG--TC-GCCGGAGTTACTAAAGAGT 429
Query 558 TTTTTCCGGTGAGTGGAGACTGTGGACATCTACGAGATGTTGAAGGATCATCAAGCTCTA 617
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 430 TTTTTCCGGTGAGTGGAGACTGTGGACATCTACGAGATGTTGAAGG---ATCAAGCTCAA 486
Query 618 GAAACTGGATAGATCTTTCTTTTGACCGTATT-GGTGACGGAGAAACGAAATTGGTAACT 676
||| |||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 487 GAAGTTGGATAGATCTTTCTTTTGACCGT-TTCGGTGACGGTGAAACGAAATTGGTAACT 545
Query 677 CC-G-----GTTCCGACTCCGGCTCCGGTTCCGGCTCAGGTTAAAAAGAGTCGGAGAGGA 730
|| | |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||
Sbjct 546 CCGGTTCCAGTTCCGACTCCGGCGCCGGTTCCGACTCAGGTGAAAAAGAGTAGGAGAGGA 605
Query 731 CCAAGGTCTAGAAGTTCACAGTATAGAGGAGTTACTTTTTATAGAAGAACTGGTCGATGG 790
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 606 CCAAGATCAAGAAGTTCACAGTATAGAGGAGTTACCTTTTATAGAAGAACTGGTCGATGG 665
Query 791 GAGTCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTCGACACTGCTCAT 850
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 666 GAATCACATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGTTTTGACACTGCTCAT 725
Query 851 GCTGCAGCTAGAGCTTATGATCGAGCTGCTATTAAATTTAGAGGTGTTGATGCTGATATC 910
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 726 GCTGCAGCTAGAGCTTATGATCGAGCTGCTATAAAATTTAGAGGTGTTGATGCTGATATC 785
Query 911 AACTTTACTCTTGGTGATTATGAGGAAGATATGAAACAGGTACAAAACTTGAGTAAGGAA 970
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 786 AACTTTACTCTTGGCGATTACGAGGAAGATATGAAGCAGGTACAAAACTTGAGTAAGGAA 845
Query 971 GAGTTTGTGCATATACTGCGTAGACAGAGCACGGGGTTT-TCGCGGGGGAGTTCGAAGTA 1029
||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 846 GAGTTTGTGCATATACTTCGTCGACAGAGCAC-GGGTTTCTCGCGGGGGAGTTCGAAGTA 904
Query 1030 TCGAGGGGTTACGTTACACAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGG 1089
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TCGAGGGGTTACATTACATAAATGTGGTAGATGGGAAGCTAGGATGGGGCAGTTTCTTGG 964
Query 1090 TAAAAAG 1096
|||||||
Sbjct 965 TAAAAAG 971
Score = 878 bits (475), Expect = 0.0
Identities = 669/753 (89%), Gaps = 51/753 (7%)
Strand=Plus/Plus
Query 1141 GGCTTATGACAAGGCTGCAATCAACACTAATGGTAGAGAAGCAGTCACGAACTTCGAGAT 1200
|||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||
Sbjct 971 GGCTTATGACAAGGCTGCTATCAACACCAATGGTAGAGAAGCAGTCACCAACTTTGAGAT 1030
Query 1201 GAGTTCATACCAAAATGAGATTAACTCTGAGAGCAATAAC--------TC-TG--AGA-T 1248
|||||||||||||||||||||||||||||||| ||||||| || || | | |
Sbjct 1031 GAGTTCATACCAAAATGAGATTAACTCTGAGACCAATAACGAAGGTGGTCATGACAAACT 1090
Query 1249 TGACCTCAACTTGGGAATCTCTTTATCGACCGGTAATGCGCCAAAGCAAAATGGGAGGCT 1308
|| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1091 AGATCTCAACTTGGGAATCTCTTTATCGTCCGGTAATGCGCCAAAGCAAAACGGGAGGCT 1150
Query 1309 CTTTCACTTCCCTTCTAATACTTATGAAACTCAGCGTGGAGTTAGCTTGAGGATAGATAA 1368
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1151 CTTTCACTTCCCTTCTAATACTTATGAAACTCAACGTGGAGTGAGCTTGAGGATAGATAA 1210
Query 1369 CGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTATGGATCCTCGGATCATCGC-C 1427
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1211 TGAATACATGGGAAAGCCGGTGAATACACCTCTTCCTTACGGATCCTCGGATCATCGCGC 1270
Query 1428 TTTACTGGAACGGAGCATGCCCGAGTTATAATAATCCCGCCGAGGGAAGAGCAACAGAAA 1487
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1271 TTT-TTGGAACGGAGCATGCCCGAGTTATAATAATCCCATCGAGGGAAGAGCAACAGATA 1329
Query 1488 AGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCGGGGCAAACAA 1547
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1330 AGAGAAGTGAAGCTGAAGGGATGATGAGTAACTGGGGATGGCAGAGACCGCAGC---CA- 1385
Query 1548 GCGCCGTGAGACCGCAGCCACCGGGACCACAACCACCACCATTGTTCTCAGTTGCAGCAG 1607
| | | | ||||||||||||| |||| |||||||||||||||||||
Sbjct 1386 -C-C-G-G-GACCGCAGCCACC---ACCA------------TTGTTCTCAGTTGCAGCAG 1425
Query 1608 CATCATCAGGATTCTCACATTTCCGGCCACAACCTCCCAATGACAATGCAACACGTGGTT 1667
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1426 CATCATCAGGATTCTCACATTTCCGGCCACAACCTCCCAATGACAATGCGACACGTGGTT 1485
Query 1668 ACTTTTATCCACACCCTTAACTTGTAAGGGGACATATGAGAGtttttttACCAtctctct 1727
||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| |||||
Sbjct 1486 ACTTTTATCCACAACCTTAACTTATATGGGGACATATGAGAGTTTTTT-ACCATTTCTCT 1544
Query 1728 ctctctcAACACTCTAGTCCCCTTTCAAAAATGTCATTTGGGTTTTAGATTTTTCACATA 1787
||||||| |||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 1545 CTCTCTC-----TCTAGTCCCCTTTCAAAAATGTCACTTGGGTTT-AGTTTTTT-ACATA 1597
Query 1788 CAATGATCAA-TTTTTCCAAATTCAGATGAGAAAATGTGtttttttttACATCAAAATTT 1846
|||||||||| |||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 1598 CAATGATCAAATTTTTCCAAATTCAGATGAGAAAATGTGGGTATTT--ACATCAAA-TTT 1654
Query 1847 GGTTTGTTGAGAAAAAACTTTATCAACTAAATG 1879
|||| ||||||| ||| ||| ||||||||||||
Sbjct 1655 GGTTCGTTGAGAGAAA-CTTGATCAACTAAATG 1686
Score = 86.1 bits (46), Expect = 9e-16
Identities = 51/53 (96%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 1 AAATGTTCCCTCACACGTCTCCTTCTATCTTCTTCTCCACTTTaaaaaaaaaa 53
||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1 AAATGTTCCCTCACACGTCTCCTTCTATCTTCTTCTCCAATT-AAAAAAAAAA 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5