BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28605.1 Length=870 Score E Sequences producing significant alignments: (Bits) Value Ahg481771 jgi|Araly1|481771|fgenesh2_kg.4__831__AT2G28605.1 1127 0.0 > Ahg481771 jgi|Araly1|481771|fgenesh2_kg.4__831__AT2G28605.1 Length=868 Score = 1127 bits (610), Expect = 0.0 Identities = 756/822 (92%), Gaps = 28/822 (3%) Strand=Plus/Plus Query 52 CTCCCAAATTATGTCTCTTCT---CATCTTC-TCTTC--CTCCTT-TCTCTCATCACAAG 104 |||||||||| | |||||||| |||| || ||||| || ||| | | |||||| ||| Sbjct 59 CTCCCAAATTGTCTCTCTTCTCACCATCATCATCTTCTTCTTCTTGT-TTTCATCAGAAG 117 Query 105 ATCCATAAA--T-TCTTCTGCTTTGCCCAAAATCCATCATCC---ACTGTTAGCATCAAT 158 ||||||||| | || |||||||| ||||||||||||||||| |||| || |||||| Sbjct 118 ATCCATAAACGTATCCTCTGCTTTACCCAAAATCCATCATCCAAAACTG--AG-ATCAAT 174 Query 159 CTCAGCAAAAGACATTTGAATCTCTCAATTCTCACACTCTTCTTCAATGGG---TTCTTG 215 |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| Sbjct 175 CTCAGCAAAAGACACTTAAATCTCTCAATTCTCACACTCTTCTTCAATGGGTTTTTCTTA 234 Query 216 TTGGATAATAAAGCCAAATCCATGGAAGAACTTCAAAGATACACTGATTCCAACAATGGC 275 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 235 TTGG---ATAAAGCCAAATCCATCGAAGAACTTCAAAGATACACTGATTCCAACAATGGC 291 Query 276 TTCACTCTTCTCATACCCTCTTCTTATACAAAGGTAGAGAAAGCAGGAGCTAATGCTCTG 335 ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| Sbjct 292 TTCACTCTTCTCATACCCTCTTCTTATACCAAGGTAGAGAAAGCTGGAGCCAATGCTCTG 351 Query 336 TTTGAAGAACTAAACAATGGAAGCAACAATATTGGTGTTGTTGTTAGTCCTGTCCGTATA 395 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 352 TTTGAAGAACCAAACAATGGAAGCAACAATATTGGTGTTGTGGTTAGTCCTGTCCGTATA 411 Query 396 AAGAGCCTTGACCAATTTGGTTCTCCTCAATTTGTTGCTGATAAGCTTATCAACGCAGAG 455 || || ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 412 AAAAGTCTTGACCAATTTGGTACTCCTCAATTTGTTGCTGATAAGCTCATCAACGCAGAG 471 Query 456 AAACGAAAGGAAAGCACAAAGGAAGCAGAAGTTGTATCAGTGGGAGAGAGAGCAGGATTA 515 |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 472 AAACGAAAGGAAAGTACAAAGGAAGCAGAAGTTGTGTCAGTGGGAGAGAGACCAGGATTA 531 Query 516 GGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACAAGAGGAGGAATCAAGAGG 575 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 532 GGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACGAGAGGAGGAATTAAGAGG 591 Query 576 GTTTTCTCAGCTGCGTTTGTGAGTTCTAACAAGCTTTATCTATTGAATGTTGTTCATTCA 635 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 592 GTTTTCTCAGCTGCGTTTGTGAGTTCTAATAAGCTTTATCTATTGAACGTTGTTCATTCA 651 Query 636 GATAAACCAGAGAATCCATTGGATTCAAGTACGAGAATGTCGTTGGAACAAGTTCTTCAC 695 ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| Sbjct 652 GATAAACCAGAGAATCCGTTAGATTCAAGTACGAGAATGTTGTTGGAACAAGTTCTTCAC 711 Query 696 TCCTTTGATGCTCTGCCTCTTACATGACCACCAAACCCAATAATCTGTTTCCTTGTTGAG 755 || ||||||||||||||||||||||||||| | |||||||| |||||| ||||||||| Sbjct 712 TCTTTTGATGCTCTGCCTCTTACATGACCA--A--CCCAATAAACTGTTTTCTTGTTGAG 767 Query 756 CTTGTTTGATGGGCTTATTCTTGAGTTAATGGGCTTTTGTAGTCATTTATTGAGCCCAAT 815 ||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||| Sbjct 768 CTTGTTTGATGGGCTTATTCTTGAGTTAATGGGCTTT-GTAGTAAATTGTTGAGCCCAAT 826 Query 816 AAATCTGAGATTTCTTTTGTTACAAATACTGTTGCCTAGTTA 857 |||||||||||||||||||||||||||| ||||||||||||| Sbjct 827 AAATCTGAGATTTCTTTTGTTACAAATAATGTTGCCTAGTTA 868 Score = 67.6 bits (36), Expect = 1e-10 Identities = 40/42 (95%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 9 GGAGAAAGAAGCAAAATGTGGTCGCAAAGCTTCTTAGGTTCT 50 |||||| |||||||||||||||||||||||||||||| |||| Sbjct 1 GGAGAAGGAAGCAAAATGTGGTCGCAAAGCTTCTTAGCTTCT 42 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32213864865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5