BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28800.1 Length=1788 Score E Sequences producing significant alignments: (Bits) Value Ahg933344 jgi|Araly1|933344|scaffold_401332.1 2211 0.0 > Ahg933344 jgi|Araly1|933344|scaffold_401332.1 Length=1421 Score = 2211 bits (1197), Expect = 0.0 Identities = 1335/1401 (95%), Gaps = 12/1401 (1%) Strand=Plus/Plus Query 90 CTCCAATGGCGAGAGTTCTAGTCTCGTCTCCATCTTCATTCTTCGGTTCACCGTTGATTA 149 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 20 CTCCAATGGCGAGAGTTCTAGTCTCGTCTCCCTCTTCATTCTTCGGTTCACCGTTGATTA 79 Query 150 AACCGTCGTCATCTCTCCGTCACAGTGGAGTAGGAGGAGGAGGAACCGCTCAATTTCTTC 209 |||||||||| |||||||||||| ||| |||||||| | ||||||||||| | Sbjct 80 AACCGTCGTCGTCTCTCCGTCAC-----AGT----GGAGGAGG-A--GCTCAATTTCTAC 127 Query 210 CATACCGGAGTAATAATAACAAACTCTTCACTACTTCAACCACCGTACGATTCAGCTTAA 269 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 128 CATACCGGAGTAATAATAACAAGCTTTTCACTACTTCAACCACCGTACGATTCAGCTTAA 187 Query 270 ACGAGATTCCTCCTTTCCATGGCTTGGATTCATCTGTAGACATCGGAGCGATTTTCACCA 329 |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 188 ACGAGATTCCTCCTTTCCATGGATTGGATTCATCGGTAGACATCGGAGCGATTCTCACCA 247 Query 330 GAGCTGAATCTCTTCTCTATACAATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCG 389 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 248 GAGCTGAGTCTCTTCTTTATACTATAGCTGACGCCGCCGTTGTTGGTGCTGATTCCGTCG 307 Query 390 TAACTACTGATTCATCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATG 449 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 TTTCTACTGATTCCTCCGCCGTGCAGAAGAGTGGTGGTTGGTTTGGTTTTATCTCCGATG 367 Query 450 CTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCTTATG 509 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 368 CTATGGAATTGGTTCTTAAGATTTTGAAGGATGGATTATCAGCGGTTCATGTACCGTATG 427 Query 510 CTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACGTATCCTTTGA 569 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 428 CTTATGGATTTGCGATTATCTTGCTTACGATTATCGTCAAAGCAGCGACTTATCCTTTGA 487 Query 570 CTAAGCAACAGGTTGAATCAACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGA 629 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 488 CTAAGCAACAGGTTGAATCGACACTAGCGATGCAAAATCTTCAACCGAAAATCAAAGCGA 547 Query 630 TTCAACAACGTTACGCAGGAAATCAGGAGAGGATACAACTAGAGACATCGCGATTGTATA 689 ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 548 TTCAACAACGTTACGCAGGGAATCAGGAGAGAATACAACTAGAGACATCGCGCTTGTATA 607 Query 690 AACAAGCTGGTGTTAATCCGTTGGCAGGTTGCTTACCAACTTTAGCAACCATACCAGTTT 749 ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 608 AACAAGCTGGTGTAAATCCATTGGCAGGTTGCTTACCAACTTTAGCTACCATACCAGTTT 667 Query 750 GGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAGGGATTGTTTACAGAAGGTT 809 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 668 GGATTGGTTTATACCAAGCTCTCTCCAACGTGGCCAACGAGGGATTGTTTACAGAAGGTT 727 Query 810 TCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCG 869 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 728 TCTTTTGGATTCCCTCTCTGGGTGGACCAACAACTATAGCTGCTCGGCAGAGTGGATCCG 787 Query 870 GCATTTCGTGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGTATGACACTG 929 |||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 788 GCATATCATGGCTTTTTCCGTTTGTGGACGGGCATCCACCATTGGGATGGAATGACACTG 847 Query 930 TAGCTTATCTTGTTCTACCTGTTCTACTTATTGCCTCCCAGTATGTGTCAATGGAAATTA 989 |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 848 CAGCTTATCTTGTTCTACCTGTTCTCCTTATTGCCTCCCAATATGTGTCAATGGAGATTA 907 Query 990 TGAAGCCTCCTCAAACTGATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTC 1049 |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| Sbjct 908 TGAAGCCTCCTCAAACAGATGATCCTGCCCAAAAGAATACGCTTCTTGTTTTCAAGTTTC 967 Query 1050 TTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGGC 1109 |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| Sbjct 968 TTCCACTCATGATCGGATACTTTGCATTGTCTGTCCCATCAGGATTATCTATCTACTGGT 1027 Query 1110 TCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTAGGTGGTGCAA 1169 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1028 TCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACTTGGTGGTGCAA 1087 Query 1170 AGCCAAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGAGCAAAGAGATCTA 1229 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1088 AGCCTAATATGGATGAAAACGCAAGCAAAATAATAAGTGCGGGACGGGCAAAGAGATCTA 1147 Query 1230 TTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAATTAAAAGAGCAAGAGAAGCGCA 1289 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1148 TTGCTCAGCCTGACGATGCTGGCGAAAGATTTAGACAACTAAAAGAGCAAGAGAAGCGTA 1207 Query 1290 GCAAGAAGAACAAGGCGGTTGCGAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTG 1349 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1208 GCAAGAAGAACAAGGCTGTTGCAAAAGATACAGTTGAATTGGTAGAAGAATCTCAGTCTG 1267 Query 1350 AATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGTGAAGGAGCGTTAGCTTCGA 1409 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 1268 AATCAGAAGAAGGGTCTGATGATGAGGAAGAAGAGGCTCGCGAAGGAGCATTAGCTTCAA 1327 Query 1410 GCACAACAAGCAAGCCGCTTCCTGAGGTTGGCCAACGAAGAAGCAAAAGATCGAAGCGGA 1469 |||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 1328 GCACTACAAGCAAGCCGCTTCCTGACGTTGGGCAACGAAGAAGCAAAAGATCAAAGCGGA 1387 Query 1470 AACGCACTGTATAGAACCAAA 1490 ||||||||||||||||||||| Sbjct 1388 AACGCACTGTATAGAACCAAA 1408 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67115011690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5