BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28910.1 Length=1345 Score E Sequences producing significant alignments: (Bits) Value Ahg481806 jgi|Araly1|481806|fgenesh2_kg.4__866__AT2G28910.1 1652 0.0 > Ahg481806 jgi|Araly1|481806|fgenesh2_kg.4__866__AT2G28910.1 Length=1140 Score = 1652 bits (894), Expect = 0.0 Identities = 1013/1070 (95%), Gaps = 10/1070 (1%) Strand=Plus/Plus Query 72 TCTTCCTAACGATTCCTTCACTCGAATCAGGTTTGTGAAGGTTTTTTCTAGGGTTTCGAA 131 |||||||||||||| |||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 48 TCTTCCTAACGATTTCTTCACACGAATCAGGTTTGTGAAAGTTTTTTGTAGGGTGTCGAG 107 Query 132 AAGATGCCGGCGACAGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 191 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 ACGATGCCGGCGACCGCAGGAAGAGTGCGTATGCCCGCAAACAATCGGGTGCATAGTAGT 167 Query 192 GCAGCGCTTCAGACTCATGGAATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 251 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 168 GCAGCGCTTCAGACTCACGGGATATGGCAGAGTGCGATTGGTTATGATCCTTATGCACCA 227 Query 252 ACTAGTAAAGAAGAGCCTAAGACGACACAACAGAAAACCGAAGATCCCGAGAACTCGTAC 311 ||||||||||| || || |||||||| || |||||||| |||||||| ||||||||||| Sbjct 228 ACTAGTAAAGAGGAACCGAAGACGACTCAGCAGAAAACAGAAGATCCTGAGAACTCGTAT 287 Query 312 GCGAGTTTTCAGGGACTTTTGGCTCTTGCTAGGATTACGGGTTCGAATAACGATGAGGCT 371 ||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 288 GCGAGTTTTCAAGGTCTTTTGGCTCTTGCTAGAATTACTGGTTCTAATAACGATGAGGCT 347 Query 372 CGTGGTTCTTGTAAGAAGTGTGGCCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 431 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 348 CGTGGTTCTTGTAAGAAGTGTGGTCGTGTTGGGCATTTGACGTTTCAGTGTAGGAATTTC 407 Query 432 TTGAGTACTAAGGAGGATAAGGAGAAAGATCCTGGTGCGATTGAAGCTGCGGTTTTGTCG 491 ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| Sbjct 408 TTGAGTACTAAGGAGGATAAGGATAAAGATCCTGCTGCGATTGAGGCTGCGGTTTTGTCG 467 Query 492 GGGTTGGAGAAGATTaggagaggtgttggtaaaggtgaggtt-gaggaggtgagtagtga 550 ||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||| Sbjct 468 GGGTTGGAGAAGATTAGGAGAGGAGTTGGTAAAGGTGA-GTTGGAGGAGGAGAGTAGTGA 526 Query 551 agaggaagaggagagtgagagtTCTGATTCTGATGTTGATTCTGAGATGGAGAGGATTAT 610 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 527 AGAGGAAGAGGAGAGTGAGAGTTCTGATTCGGATGTTGATTCTGAGATGGAGAGGATTAT 586 Query 611 TGCTGAGAGGTTTGGGAAGAAGAAAGGT--GGG-AGTAGTGTTAAGAAGACGAGTTCGGT 667 |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 587 TGCTGAGAGGTTTGGGAAGAAGAAAGGTGGGGGTAGTAGTGTTAAGAAGACGAGTTCGGT 646 Query 668 TA-G--GAAGAAGAAGAAGCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 724 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 GAGGAAGAAGAAGAAGAAGCGTGTTTCTGATGAGTCTGATTCTGATTCGGATTCTGGAGA 706 Query 725 TAGGAAGAGAAGGCGGAGGTCGATGAAGAAGCGGAGTTCGCATaagagaaggagtttgag 784 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 707 TAGGAAGAGAAGGCGGAGGTCGAAGAAGAAGCGGAGTTCGCATAAGAGGAGGAGTACGAG 766 Query 785 tgagtctgaggatgaggaagagggaaggagtaagagaagaaaggagaggagaggaagaaa 844 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 767 TGAGTCTGAGGATGAGGATGAGGGAAGGAGTAAGCGAAGAAAGGAGAGGAGAGGAAGAAA 826 Query 845 gagagatgaagatgattctgatgagtctgaggatgaagatgaCAGACGTGTgaagagaaa 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 GAGAGATGAAGATGATTCTGATGAGTCTGAGGATGAAGATGACAGACGTGTGAAGAGAAA 886 Query 905 gagtagaaaggagaagaggagaaggagaagCCGTCGTAATCATTCTGATGATTCTGATTC 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 GAGTAGAAAGGAGAAGAGGAGAAGGAGAAGCCGTCGTAATCATTCTGATGATTCTGATTC 946 Query 965 AGAGTCTTCTGAAGATGATAGAAGACAGAAGCGGAGGAACAAAGTCGCAGCTTCTTCTGA 1024 ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 947 AGAATCCTCTGAAGATGATAGAAGGCAGAAGCGAAGGAACAAAGTCGCAGCTTCTTCTGA 1006 Query 1025 CTCAGAAGCAAATGTTTCAGGCGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAGCG 1084 ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1007 CTCGGAAGCCAATGTTTCAGGGGATGATGTTTCACGCGTTGGACGTGGTTCTTCTAAACG 1066 Query 1085 GT-CTGAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGCGAGAGTAG 1133 || | |||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1067 GTAC-GAGAAGAAGAGCAGGAAACGTCATCACAGGAAAGAGTGAAAGTAG 1115 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50322250440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5