BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29090.1 Length=1975 Score E Sequences producing significant alignments: (Bits) Value Ahg481828 jgi|Araly1|481828|fgenesh2_kg.4__888__AT2G29090.1 2279 0.0 > Ahg481828 jgi|Araly1|481828|fgenesh2_kg.4__888__AT2G29090.1 Length=1541 Score = 2279 bits (1234), Expect = 0.0 Identities = 1430/1524 (94%), Gaps = 15/1524 (1%) Strand=Plus/Plus Query 335 GAATAATGCAAATCTCATCTTCATCGTCTTCA--AATTTC-TTCTCTTCTCTTTATGCTG 391 ||||||||||||||||||| ||||| || ||| |||||| ||||| ||| |||||| || Sbjct 21 GAATAATGCAAATCTCATCATCATCATCATCATTAATTTCTTTCTCCTCTATTTATGTTG 80 Query 392 ATGAACCGGCACTAATCACATTAAC-AAT-T-GT--T-GTAGTAGTAGTAGTGTTACTAT 445 ||||| |||||||||||||| |||| | | | || | || ||| |||||||||||||| Sbjct 81 ATGAATCGGCACTAATCACAATAACGAGTGTAGTAGTAGTGGTAATAGTAGTGTTACTAA 140 Query 446 TTAAATGGTGGTTGCACTGGAAAGAGCAAAGACTACGGCTACCTCCTGGCTCCATGGGGT 505 || |||||||| ||||| ||||||||||||||| | ||||||| |||||||||||||||| Sbjct 141 TTCAATGGTGGCTGCACCGGAAAGAGCAAAGACGAAGGCTACCGCCTGGCTCCATGGGGT 200 Query 506 TGCCTTACATCGGAGAGACACTCCGCCTCTACACAGAAAATCCCAATTCCTTCTTCGCCA 565 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 201 TGCCTTACATCGGAGAGACACTCCGCCTCTACACAGAGAATCCCAATTCCTTCTTCGCCA 260 Query 566 CTCGCCAAAACAAGTACGGGGATATATTCAAGACGCACATATTAGGATGTCCATGTGTGA 625 |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| Sbjct 261 CTCGCCAAAACAAGTATGGGGAGATATTCAAAACGCACATATTAGGATGTCCATGTGTGA 320 Query 626 TGATAAGTAGTCCAGAGGCGGCTCGAATGGTGTTAGTGAGCAAAGCTCACTTGTTCAAGC 685 ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 321 TGATAAGTAGTCCTGAGGCGGCCCGGATGGTGTTAGTGAGCAAAGCTCACTTGTTTAAGC 380 Query 686 CAACTTATCCTCCAAGCAAAGAGCGTATGATTGGACCAGAGGCTCTTTTCTTCCACCAAG 745 | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 381 CTACTTATCCTCCTAGCAAAGAGCGTATGATTGGACCAGAGGCTCTCTTCTTCCACCAAG 440 Query 746 GTCCATACCATTCTACCCTTAAGCGGCTGGTCCAGTCTTCTTTCATGCCTTCTGCTCTCA 805 |||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||||| Sbjct 441 GTCCGTACCATTCTACCCTCAAGCGGCTCGTTCAGTCTTCCTTCATGCCTTCTGCTCTCA 500 Query 806 GACCAACCGTCTCTCACATCGAGCTCCTTGTCCTCCAAACCCTTTCCTCTTGGACGTCCC 865 |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct 501 GACCAACCGTGTCTCACATCGAGCTCCTTGTCCTCCAAACTCTATCCTCTTGGACATCCC 560 Query 866 AAAAGTCCATCAACACCCTCGAATACATGAAACGATATGCATTCGATGTGGCGATCATGT 925 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 561 AAAAGTCCATCAACACCCTCGAATACATGAAACGATATGCATTCAATGTGGCGATCATGT 620 Query 926 CAGCGTTCGGGGACAAAGAGGAGCCCACTACGATTGATGTTATTAAGCTTCTCTATCAAC 985 ||||||||||||||||||||||||||||| | ||||| | ||||||| ||||||||||| Sbjct 621 CAGCGTTCGGGGACAAAGAGGAGCCCACTGCAATTGAAGCAATTAAGCATCTCTATCAAC 680 Query 986 GTCTCGAAAGGGGTTACAACTCCATGCCTCTCGACCTACCGGGCACACTTTTTCATAAGT 1045 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 681 GTCTCGAAAGAGGTTACAACTCCATGCCTCTCGACCTACCGGGCACACTTTTTCATAAAT 740 Query 1046 CCATGAAGGCAAGAATAGAATTAAGCGAGGAACTAAGGAAAGTAATagagaagagaagag 1105 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 741 CCATGAAGGCAAGAAGAGAATTAAGCGAGGAACTAAGGAAAGTGATAGAGAAGAGAAGAG 800 Query 1106 agaatgggagagaagaagGAGGACTATTGGGAGTACTTCTGGGAGCAAAGGATCAAAAAC 1165 ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| Sbjct 801 AGAATGGGAGAGAAGGAGGAGGACTATTGGGAGTACTTCTCGGAGCAAAGGATAAAAAAC 860 Query 1166 GCAACGGCTTAAGTGATTCACAGAT-TGCTGACAACATCATCGGTGTTATATTCGCCGCC 1224 |||| |||||||| ||||||||||| | | ||||||||||| |||||||| ||||||||| Sbjct 861 GCAATGGCTTAAGCGATTCACAGATCT-CCGACAACATCATTGGTGTTATCTTCGCCGCC 919 Query 1225 ACCGACACCACCGCTTCTGTCTTAACTTGGCTTCTCAAGTACTTACACGACCACCCCAAT 1284 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 920 ACTGACACCACCGCTTCTGTCTTAACTTGGCTTCTCAAGTACTTACACGACCACCCCAAT 979 Query 1285 CTCCTCCAAGAAGTCTCCAGGGAGCAATTCAGCATTCGACAGaaaataaaaaaagaaaaC 1344 || ||||||||||| || ||||||||| || |||||||||| ||||||| |||||||||| Sbjct 980 CTACTCCAAGAAGTTTCGAGGGAGCAAGTCGGCATTCGACAAAAAATAATAAAAGAAAAC 1039 Query 1345 CGAAGAATCTCATGGGAAGATACAAGAAAAATGCCACTGACCACTAGGGTGATACAAGAG 1404 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1040 CGAGGAATCTCATGGGAAGATACAAGAAAAATGCCACTGACCACAAGGGTGATACAAGAG 1099 Query 1405 ACACTAAGAGCAGCAAGTGTACTGTCCTTTACATTTAGAGAAGCAGTACAAGACGTCGAA 1464 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1100 ACACTAAGAGCAGCAAGTGTATTGTCCTTTACATTTAGAGAAGCAGTACAAGACGTCGAA 1159 Query 1465 TAT-GATGGCTACTTGATCCCAAAGGGTTGGAAGGTTCTTCCTCTTTTCCGGCGAATCCA 1523 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 T-TCGATGGCTACTTGATCCCAAAGGGTTGGAAGGTTCTTCCTCTTTTCCGGCGAATCCA 1218 Query 1524 TCACTCCTCCGAATTCTTCCCCGATCCTGAAAAATTCGATCCTTCTAGATTCGAGGTGGC 1583 |||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||| Sbjct 1219 TCACTCCTCCGAATTCTTCCCCAATCCCGAAAAGTTTGATCCTTCTAGATTCGAGGTGGC 1278 Query 1584 ACCAAAACCTTACACGTACATGCCATTCGGAAATGGAGTGCACTCATGTCCAGGAAGTGA 1643 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1279 ACCAAAACCTTACACGTATATGCCATTTGGAAATGGAGTGCACTCATGTCCAGGAAGTGA 1338 Query 1644 GCTGGCTAAACTTGAGATGCTTATCCTCCTTCACCACCTCACTACTTCCTTCAGATGGGA 1703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 GCTGGCTAAACTTGAGATGCTTATCCTCCTTCACCACCTCACTACTTCCTTCAGATGGGA 1398 Query 1704 AGTGATTGGAGATGAAGAAGGTATACAGTATGGTCCTTTCCCTGTACCCAAGAAGGGTTT 1763 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1399 AGTGATAGGAGGTGAAGAAGGTATACAGTATGGTCCTTTCCCTGTACCCAAGAAGGGTTT 1458 Query 1764 ACCAATAAGAGTAACCCCGATTTAAGCCTAAGGCATATTTGGGAttttttttACT-AGTC 1822 |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| Sbjct 1459 ACCAATAAGAGTAACCCCGATTTAAGCCTAAGGCATATTTGG-ATTTTTTTTTTTTAGTC 1517 Query 1823 CAATAAGTCATCTTTAATTTCTCT 1846 ||||||||||||||||||||||| Sbjct 1518 GAATAAGTCATCTTTAATTTCTCT 1541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74237887505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5