BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29110.1
Length=2844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887884 jgi|Araly1|887884|Al_scaffold_0041_2 1965 0.0
Ahg481829 jgi|Araly1|481829|fgenesh2_kg.4__889__AT2G29110.1 1825 0.0
Ahg887883 jgi|Araly1|887883|Al_scaffold_0041_1 1559 0.0
> Ahg887884 jgi|Araly1|887884|Al_scaffold_0041_2
Length=2844
Score = 1965 bits (1064), Expect = 0.0
Identities = 2207/2744 (80%), Gaps = 138/2744 (5%)
Strand=Plus/Plus
Query 1 ATGAACCCTaaaaaaaaCAATAACACCTTTCTG-AGCTACtttg---t-tt-gttt---g 51
|||||||||| |||||| ||||| |||||| || | |||||||| | || |||| |
Sbjct 10 ATGAACCCTAGAAAAAATAATAATACCTTTATGTA-CTACTTTGTCCTGTTCGTTTGGGG 68
Query 52 tttt-tgttgCTCG-AGGTTGGTTTAGGACAAAACCAAATAAGTGAAATCAAAGTAGGAG 109
|||| ||||| | | |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 69 TTTTGTGTTGAT-GCAGGTTGGTTTAGGACAAAGCCAAACAAGTGAAATCAAAGTAGGAG 127
Query 110 TAGTTCTTGATCT-CAATACAACATTTTCGAAGATCTGTCTCACTTCTATTAACCTGGCG 168
|||| |||||||| ||| || ||||||| |||||||| |||||||| |||||| | ||
Sbjct 128 TAGTGCTTGATCTCCAA-ACTTCATTTTCCAAGATCTGCCTCACTTCCATTAACATATCG 186
Query 169 TTGTCTGATTTCTATAAAGACCATCCTAATTAC-CGCACAAGACTTGCGC-TTCACGTTA 226
||||| |||||||| ||| | ||| || ||||| | |||||||||||| | ||||| | |
Sbjct 187 TTGTCCGATTTCTACAAATATCATGCTGATTACAC-CACAAGACTTGC-CATTCACATCA 244
Query 227 GAGATTCCATGAAAGACACTGTGCAGGCTTCAGCTGCAGCCTTGGACCTAATCCAGAACG 286
||||||||||| |||| ||| ||||| ||| ||||||| ||||||||||| |||| |
Sbjct 245 GAGATTCCATGGAAGATGTTGTCCAGGCCTCATCTGCAGCTTTGGACCTAATTAAGAATG 304
Query 287 AGCAAGTGAGTGCCATCATCGGACCAATAGA-CTCTATGCAGGCAAAGTTTATGATCAAA 345
|||||||||| ||||||||||| |||| | | ||||||||| || |||| ||||||| |
Sbjct 305 AGCAAGTGAGCGCCATCATCGGGCCAAGA-ACCTCTATGCAAGCCGAGTTCATGATCAGA 363
Query 346 CTGGCCAACAAAACTCAAGTACCGACCATCTCATTCTC-AGCAACAAGCCCTCTTTTAAC 404
|| ||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||| | ||
Sbjct 364 CTCGCCAATAAATCTCAAGTACCGACCATCACATTCTCTA-CAACCAGCCCTCTTATGAC 422
Query 405 ATCCATCAAAAGCGATTACTTCGTCCGAGGC-ACTATCGATGACTCATACCAGGTCAAAG 463
||||||||| ||| ||||||||||||| | ||| |||||||||||| |||||||||||
Sbjct 423 ATCCATCAACAGCCCTTACTTCGTCCGA-ACTACTCTCGATGACTCATCCCAGGTCAAAG 481
Query 464 CCATTGCAGCCATAT-TTGAATCCTTTGGATGGAGAAGTGTCGTCGCCATTTATGTGGAC 522
||||||| ||||| | | ||||||| || ||||||| || || |||||||||||||||
Sbjct 482 CCATTGCGGCCAT-TGTCAAATCCTTCGGGTGGAGAAACGTAGTTGCCATTTATGTGGAC 540
Query 523 AACGAGTTAGGTGAAGGAATCATGCCTTACTTGTTTGACGCTTTACAAGACGTGCAAG-- 580
||||| || || |||||||| || || ||||| | |||||||||||||||||||||
Sbjct 541 AACGAATTCGGAGAAGGAATAATTCCCTACTTAACTAACGCTTTACAAGACGTGCAAGCT 600
Query 581 --T-T-G---ATAGAAGTGTGATCCCCTC-GGAGGCTAACGATGACCAGATTCTAAAAGA 632
| | | ||||| || |||| ||||| ||| ||||| ||||| |||||||| || ||
Sbjct 601 CTTGTAGTCAATAGATGTTTGAT-CCCTCAGGAAGCTAATGATGATCAGATTCTCAAGGA 659
Query 633 ACTTTATAAGCTCATGACGAGGCAGACTAGGGTTTTCGTTGTCCACATGGCATC-ACGTC 691
||||||||||| ||||||| |||||| ||||| ||||||||||||||| || | || ||
Sbjct 660 GCTTTATAAGCTAATGACGATGCAGACGAGGGTATTCGTTGTCCACATGCCACCAAC-TC 718
Query 692 T-TGCTTCACGGATTTTTGAGAAAGCTACAGAGATTGGGATGATGGAGGAAGGGTATGTA 750
| | || ||| ||||| ||||||||| ||||||||| |||||| ||||||| |||| |
Sbjct 719 TCGGATT-TCGGCTTTTTCAGAAAGCTAGAGAGATTGGTATGATGAAGGAAGGATATGCA 777
Query 751 TGGTTAATGACCA-ATGGAATGACT-CATATGATGAGA-CAT-ATCCATCATGGTCGTAG 806
|||||| ||| || ||||| ||| | || || ||| | | | || | | ||| | ||
Sbjct 778 TGGTTATTGA-CAGATGGAGTGA-TGAATTTGGTGAAATC-TAAT-GAACGCGGTAGCAG 833
Query 807 CTTAAATACTATAG-ATGGCGTGTTAGGTGTGAGGAGCCATGTCCCCAAATCGAAAGG-G 864
||| | | ||| | | || || || ||||| ||||||||| ||||||||||| |||| |
Sbjct 834 CTTGGAGAATAT-GCAAGGGGTTTTGGGTGTAAGGAGCCATATCCCCAAATCG-AAGGAG 891
Query 865 CTCGAAGATTTCCGTTTGAGATGGAA-AAGAA-ATTT--CAAGAAGGAGAATCCATGGCT 920
|||||||||||| | ||||||||||| || || ||| ||||||| | | || | |
Sbjct 892 CTCGAAGATTTCAGATTGAGATGGAAGAA-AAGGTTTGATAAGAAGG-GGA---AT-GAT 945
Query 921 GAGGGATGATCTTAGCATTTTTGGATTATGGGCGTATGATTCAACCACTGCATTGGCCAT 980
|| | || | | |||||||| |||| |||| |||||||| | |||||| ||||||||
Sbjct 946 GA---A-GAGCCGAACATTTTTGCATTAAGGGCATATGATTCGATCACTGCTTTGGCCAT 1001
Query 981 GGCCGTGGAGAAAACCAACAT-AAGCAGCTTTCCGTATAATAATGCGAGTGGC-TCGT-C 1037
|||||| |||||||||| || ||| ||||| | |||| | || ||| | || || |
Sbjct 1002 GGCCGTAGAGAAAACCAGTATAAAG-AGCTTGCGGTATGAGCATCCGA-TCGCTTC-TAG 1058
Query 1038 AAATAACATGACAGATTTGGGGACGCTAC-ACGTCTCTCGCTATGGTCCAAGTCTTCTAG 1096
|||||| | ||||||| | | ||| || | ||||||||||| |||||||||||||||
Sbjct 1059 AAATAATAAGACAGATCTAGCGAC-CTTCGGGGTCTCTCGCTACGGTCCAAGTCTTCTAA 1117
Query 1097 AGGCTCTCTCGGAA-ATAAGATTCAATGGTCTGGCAGGAAG-GTTT-AATCTC-ATAGAC 1152
||||||| || ||| |||||||||| ||| | || || || |||| || ||| || ||
Sbjct 1118 AGGCTCTTTC-GAATGTAAGATTCAAAGGTTTAGCCGG-AGAGTTTGAA-CTCGTTA-AC 1173
Query 1153 AGGCAGCTCGAGTCACCAAAGTTTGAGATCATAAATTTTGTCGGAAATGAAGAGAGAATT 1212
|||||||| | ||| || ||||||| |||| ||| || | ||||||||||||||||||
Sbjct 1174 GGGCAGCTCAAATCATCAGTGTTTGAGGTCATCAATATTATTGGAAATGAAGAGAGAATT 1233
Query 1213 GTCGGATTTTGGACACCGAGCAATGGACTTGTGAATGTAAATTCAAACAAA-ACAACGTC 1271
||||||| |||| ||| ||||||||||||||||||| ||| ||||| ||| || |||||
Sbjct 1234 ATCGGATTCTGGAGACCAAGCAATGGACTTGTGAATGCAAAGTCAAA-AAACACCACGTC 1292
Query 1272 ATTTACAGGGGAGAGGTTTGGGCCATTGATATGGCCAGGGAAGTCTACTA-TTGTTCCTA 1330
||| || |||||||||||||||| |||||||||| || ||||| | | || |||| |
Sbjct 1293 GTTTTCAAGGGAGAGGTTTGGGCCGGTGATATGGCCCGGTAAGTCGA-GAGTTATTCCGA 1351
Query 1331 AAGGATGGGAGATTCCAACTAATGGTAAGAAGATTAAAGTGGGTGTTCCAGTAAAGAAAG 1390
|||| |||||||||||||| || || |||| | ||| |||||| ||||||| |||||||
Sbjct 1352 AAGGTTGGGAGATTCCAACAAACGGGAAGATGCTTAGAGTGGGCATTCCAGTGAAGAAAG 1411
Query 1391 GCTTCTTCAACTTTGTGGAGGTAATCACGGATCCTATCACTAAC-ATAACAACTCCAAAG 1449
||||||| || |||||||| | || || ||||| |||| |||| || | | |||| |
Sbjct 1412 GCTTCTTAAATTTTGTGGATGCAAAGACAGATCCGATCAGTAACGCTATGATC-CCAACG 1470
Query 1450 GGTTAC-GCCATAGACATCTTTGAAGCTGCTCTTAAGAAGTTACCATATTCAGTCATTCC 1508
|||||| | ||| ||| |||||||||||| |||||| ||||| || || || ||||||||
Sbjct 1471 GGTTACTG-CATTGACGTCTTTGAAGCTGTTCTTAAAAAGTTGCCTTACTCGGTCATTCC 1529
Query 1509 -ACAATACTACCG-TTTCGAGTCTCCGGATGATG-ACTACGATGACTTGGTCTATAAAGT 1565
| |||| || | |||| |||||| ||||| | ||||||| || |||| || ||||
Sbjct 1530 TA-AATA-TATTGCTTTCTTGTCTCCAGATGA-GAACTACGACGAAATGGTATACCAAGT 1586
Query 1566 CGATAACGGGACTTTGGATGCAGTTGTTGGAGATGTAACCATCACAGCGTACAGATCTTT 1625
| | |||||||| | ||||||||||| |||||||||||||||| |||| |||| || ||
Sbjct 1587 CTACAACGGGACGTACGATGCAGTTGTAGGAGATGTAACCATCAGAGCGAACAGGTCATT 1646
Query 1626 GTATGCT-GACTTT-AC-CTTACCATACACAGAGTCAGGAGTGTCTATGATGGTGCCGGT 1682
||||| | || ||| || | |||| ||| ||||||| |||||||||||||||||||| |
Sbjct 1647 GTATG-TCGA-TTTCACGC-TACCGTACTCAGAGTCTGGAGTGTCTATGATGGTGCCTCT 1703
Query 1683 -GAGAGACAACGAGAATAAGAACACATGGGTGTTCCTCAAACCTTGGGGCTTAGACTTAT 1741
|| |||||| |||| ||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 1704 CAAG-GACAACAAGAACAAGAATACATGGGTGTTCCTCAAACCTTGGAGCTTAGACCTAT 1762
Query 1742 GGGTCACCACTGCTTG-TTTCTTCGTCCTCATTGGTTTTGTTGTGTGG-TTGTTCGAACA 1799
||||||| || ||||| ||| ||||| ||||||| |||||||||||| || || |||||
Sbjct 1763 GGGTCACGACCGCTTGCTTT-TTCGTATTCATTGGGTTTGTTGTGTGGATT-TTAGAACA 1820
Query 1800 TAGAGTCAACACCGACTTCCGTGGACCGCCTCACCACCAGATCGGCACTAGTTTTTGGTT 1859
||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||
Sbjct 1821 CAGAGTCAACACCGACTTTCGTGGACCACCTCACCATCAGATAGGCACCAGTTTCTGGTT 1880
Query 1860 CTCTTTCTCCACCATGGTTTTTGCCCACCGTGAGAAGGTAGTGAGCAACTTAGCAAGGTT 1919
| ||||||||| ||| |||||| ||||||||||||| |||||||||||||| |||||
Sbjct 1881 CGGTTTCTCCACTATGAACTTTGCCTACCGTGAGAAGGTGGTGAGCAACTTAGCGAGGTT 1940
Query 1920 TGTGGTGGTT-GTATGGTGCTTTGTGGTGCTTGTGCTCACTCAGAGCTACACAGCAAATC 1978
|||||| ||| || |||||||| |||||||||||||| | ||||||||| ||||| ||||
Sbjct 1941 TGTGGT-GTTGGTGTGGTGCTTCGTGGTGCTTGTGCTTATTCAGAGCTATACAGCGAATC 1999
Query 1979 TCACCTCTTTCTTGACGGTGCAACGTTTTCAACCAGCGGCCATAAA-TGTGAAAGATCTC 2037
||||||||||| | || || ||||| || |||||||||| || ||| || ||||||||||
Sbjct 2000 TCACCTCTTTCCTCACAGTACAACGGTTCCAACCAGCGGTCACAAATTG-GAAAGATCTC 2058
Query 2038 ATAAAAAATGGGGACTATGTAGGCTATCAACACGGGGCTTTTGTTAAAG-ATTTTCTAAT 2096
||||||||| | ||| | || || ||||| || |||| || | | ||| | ||
Sbjct 2059 ATAAAAAATAACAAATATATTGGGTACCAACAAGGCACTTTCGTGCGTGAACTTT-TGAT 2117
Query 2097 AAAAGAGGGATTTAATGTTTCTA-AGCTCAAGCCTTTTGGGTCTTCCGAAGAATGTC-AC 2154
|| | |||||| ||| || | | ||||| |||||||| ||| |||||||||| | |
Sbjct 2118 AAGTCAAGGATTTCATGAGTC-ACACCTCAAACCTTTTGGTTCTGCCGAAGAATG-CGAT 2175
Query 2155 GCGCTTTTGTCCAATGGTAGTAT-ATCAGCAGCTTTCGACGAAGTTGCTTACCTTAGGGC 2213
| | |||| |||||||| | || | ||||| ||||||||||||| || ||| ||| |
Sbjct 2176 GAGTTTTTTTCCAATGGGACAATCA-CAGCATCTTTCGACGAAGTGGCCTACATTAAAGT 2234
Query 2214 TATCCTTTCTCA-ATACTGCTCCAAATATGCCATTGTTGAGCCTACATTTAAGACTGCTG 2272
|||||||||| | | ||||||||||||||||||| ||||| ||| | || |||||||| |
Sbjct 2235 TATCCTTTCTGAGA-ACTGCTCCAAATATGCCATGGTTGAACCTTCCTTCAAGACTGCCG 2293
Query 2273 GTTTTGGCTTTGCATTCCCCAGGAATTCACCTTTGACAGGA-GATGTCTCAAAGGCTATC 2331
|||| |||||||||||||||| |||||||||||||||| || |||||||||| ||| |||
Sbjct 2294 GTTTCGGCTTTGCATTCCCCAAGAATTCACCTTTGACA-GATGATGTCTCAAGGGCCATC 2352
Query 2332 TTAAATGTGACTCAAGGAGATGAAATGCAACACATCGAGAACAAATGGTTCATGAAACAA 2391
|| |||||||||||||| || |||||||||| || ||||| |||||||||| |||||||
Sbjct 2353 TTGAATGTGACTCAAGGCGAAGAAATGCAACTTATTGAGAATAAATGGTTCAAGAAACAA 2412
Query 2392 AATGATTGTCCTGATCCAAAGACCGCTCTTTCGTCGAACCGTCTAAGCCTTCGTAGCTTT 2451
| | |||||||||||| ||| | |||||||||| |||| ||| |||||| | |||||
Sbjct 2413 AGTAATTGTCCTGATCTAAACAGTACTCTTTCGTCCAACCATCTCAGCCTTAGCAGCTTC 2472
Query 2452 TGGGGTCTGTTTCTAATAGCAGGCATTGCTTCATTCTTGGCACTACTCATCTTCGTGTTT 2511
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2473 TGGGGTCTGTTTCTAATAGCAGGCATTGCTTCATTCTTGGCACTTCTCATCTTCGTGGC- 2531
Query 2512 CTT-TTCTTGTACGAAAATAGGCATACACTATGTGATGATTCCGAAGATTCGATATG-GC 2569
| |||||||||||| | | ||| ||||| | |||||| |||||| |||| | | |
Sbjct 2532 CAACTTCTTGTACGAACACAAGCACACACTCTTTGATGACTCCGAAAATTCCTTCCGTG- 2590
Query 2570 GTAAGCTAACGTCTTTA-TTCAGAAACTTCGATGAGAAAGACATAAAGTCGCATACT-TT 2627
| ||||||| | ||| || |||| ||| |||||||||||| | |||||||||| | ||
Sbjct 2591 GAAAGCTAAATTTTTTGGTT-AGAATCTTTGATGAGAAAGACTTTAAGTCGCATA-TGTT 2648
Query 2628 CAAG-AGCA-GCGCTGTTCATCATGTGAGTTCACCTATGACTCA 2669
|||| || | || | |||||| |||||||||||||||| |||||
Sbjct 2649 CAAGGAGAATGC-C-GTTCATAATGTGAGTTCACCTATTACTCA 2690
> Ahg481829 jgi|Araly1|481829|fgenesh2_kg.4__889__AT2G29110.1
Length=2307
Score = 1825 bits (988), Expect = 0.0
Identities = 1154/1234 (94%), Gaps = 12/1234 (1%)
Strand=Plus/Plus
Query 292 GTGAGTGCCATCATCGGACCAATAGACTCTATGCAGGCAAAGTTTATGATCAAACTGGCC 351
||||| |||||||||||||||| | |||||||||| ||| |||||||||||| ||| |||
Sbjct 61 GTGAGCGCCATCATCGGACCAAGAAACTCTATGCAAGCAGAGTTTATGATCAGACTCGCC 120
Query 352 AACAAAACTCAAGTACCGACCATCTCATTCTCAGCAACAAGCCCTCTTTTAACATCCATC 411
||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 121 AACAAAACTCAAGTACCAACCATCACATTCTCTGCAACAAGTCCTCTTTTAACATCCATT 180
Query 412 AAAAGCGATTACTTCGTCCGAGGCACTATCGATGACTCATACCAGGTCAAAGCCATTGCA 471
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAGCGATTACTTCGTCCGAGCCACTATCGATGACTCATACCAGGTCAAAGCCATTGCA 240
Query 472 GCCATATTTGAATCCTTTGGATGGAGAAGTGTCGTCGCCATTTATGTGGACAACGAGTTA 531
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GCCATTTTTGAATCCTTCGGATGGAGAAGTGTCGTCGCAATTTATGTGGACAACGAGTTA 300
Query 532 GGTGAAGGAATCATGCCTTACTTGTTTGACGCTTTACAAGACGTGCAAGTTGATAGAAGT 591
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GGTGAAGGAATCATGCCTTACTTGTTTGACGCTTTACAAGACGTGCAAGTCGATAGAAGT 360
Query 592 GTGATC-CCCTCGGAGGCTAACGATGACCAGATTCTAAAAGAACTTTATAAGCTCATGAC 650
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGATCTCCC-CGGAGGCTAACGATGACCAGATTCTAAAAGAACTTTATAAGCTCATGAC 419
Query 651 GAGGCAGACTAGGGTTTTCGTTGTCCACATGGCATCACGTCTTGCTTCACGGATTTTTGA 710
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GAGGCAGACTAGGGTTTTCGTTGTCCACATGGCCTCACGTCTTGCTTCACGGATTTTTGA 479
Query 711 GAAAGCTACAGAGATTGGGATGATGGAGGAAGGGTATGTATGGTTAATGACCAATGGAAT 770
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAAAGCTAAAGAGATCGGGATGATGGAGGAAGGGTATGTATGGTTAATGACCAATGGAAT 539
Query 771 GACTCATATGATGAGACATATCCATCATGGTCGTAGCTTAAATACTATAGATGGCGTGTT 830
||| |||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||
Sbjct 540 GACGCATATGATGAGACATATCAACCATGGTCGTAGCTTAAATAATATAGAGGGCGTGTT 599
Query 831 AGGTGTGAGGAGCCATGTCCCCAAATCGAAAGGGCTCGAAGATTTCCGTTTGAGATGGAA 890
|||||||||||||||||||||| ||||||||| |||| |||||||| | ||| |||||||
Sbjct 600 AGGTGTGAGGAGCCATGTCCCCCAATCGAAAGAGCTCAAAGATTTCGGCTTGCGATGGAA 659
Query 891 -AAGAAATTTC-AAGAAGGAGAATCCATGGCTGAGGGATGATCTTAGCATTTTTGGATTA 948
|| ||| ||| || |||||||||||| | |||| |||||||| | |||||||||||||
Sbjct 660 TAA-AAAGTTCGAA-AAGGAGAATCCAACGATGAGAGATGATCTAACCATTTTTGGATTA 717
Query 949 TGGGCGTATGATTCAACCACTGCATTGGCCATGGCCGTGGAGAAAACCAACATAAGCAGC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 CGGGCGTATGATTCAACCACTGCATTGGCCATGGCCGTGGAGAAAACCAACATAAGAAGC 777
Query 1009 TTTCCGTATAATAATGCGAGTG-GCTCGTCAAATAACATGACAGATTTGGGGA-CGCTAC 1066
||||||||| |||||||||||| | |||||||||||||||||||||||||||| | |||
Sbjct 778 TTTCCGTATGATAATGCGAGTGCG-TCGTCAAATAACATGACAGATTTGGGGAAC-CTAG 835
Query 1067 ACGTCTCTCGCTATGGTCCAAGTCTTCTAGAGGCTCTCTCGGAAATAAGATTCAATGGTC 1126
||||||||||| |||| ||||||| || | |||||||||||||||||||||||||||
Sbjct 836 GTGTCTCTCGCTACGGTCAAAGTCTTTTAAATGCTCTCTCGGAAATAAGATTCAATGGTT 895
Query 1127 TGGCAGGA-AGGTTTAATCTCATAGACAGGCAGCTCGAGTCACCAAAGTTTGAGATCATA 1185
|||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 896 TGGCAGGAGAG-TTTAAACTCATAGACAAGCAGCTCGAGTCACCAAAGTTTGAGATCATA 954
Query 1186 AATTTTGTCGGAAATGAAGAGAGAATTGTCGGATTTTGGACACCGAGCAATGGACTTGTG 1245
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 955 AATTTTGTAGGAAATGAAGAGAGGATTATCGGATTTTGGACACCGAGCAATGGACTTGTG 1014
Query 1246 AATGTAAATTCAAACAAAACAACGTCATTTACAGGGGAGAGGTTTGGGCCATTGATATGG 1305
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1015 AATGCAAATTCAAACAAAACAACTTCATTTACAGGGGAGAGGTTTGGTCCATTGATATGG 1074
Query 1306 CCAGGGAAGTCTACTATTGTTCCTAAAGGATGGGAGATTCCAACTAATGGTAAGAAGATT 1365
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1075 CCAGGGAAGTCGACTATTGTTCCTAAAGGATGGGAGATACCAACTAATGGTAAGAAGATC 1134
Query 1366 AAAGTGGGTGTTCCAGTAAAGAAAGGCTTCTTCAACTTTGTGGAGGTAATCACGGATCCT 1425
||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1135 AAAGTCGGTGTTCCTGTAAAGAAAGGCTTCTTCAATTTTGTGGAAGTAATCACAGATCCT 1194
Query 1426 ATCACTAACATAACAACTCCAAAGGGTTACGCCATAGACATCTTTGAAGCTGCTCTTAAG 1485
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATTACTAACATAACAACTCCAAAGGGTTACGCCATAGACATCTTTGAAGCTGCTCTTAAG 1254
Query 1486 AAGTTACCATATTCAGTCATTCCACAATACTACC 1519
||||| ||||||||||||||||||||||||||||
Sbjct 1255 AAGTTGCCATATTCAGTCATTCCACAATACTACC 1288
Score = 758 bits (410), Expect = 0.0
Identities = 452/473 (96%), Gaps = 0/473 (0%)
Strand=Plus/Plus
Query 1576 ACTTTGGATGCAGTTGTTGGAGATGTAACCATCACAGCGTACAGATCTTTGTATGCTGAC 1635
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1291 ACTTTGGATGCAGTTGTTGGAGATGTAACTATCACAGCGTACAGGTCTTTGTATGCTGAC 1350
Query 1636 TTTACCTTACCATACACAGAGTCAGGAGTGTCTATGATGGTGCCGGTGAGAGACAACGAG 1695
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1351 TTCACGTTACCATACACAGAGTCAGGAGTGTCTATGATGGTGCCGGTGAGAGACAATGAG 1410
Query 1696 AATAAGAACACATGGGTGTTCCTCAAACCTTGGGGCTTAGACTTATGGGTCACCACTGCT 1755
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct 1411 AATAAGAACACATGGGTGTTCCTCAAACCTTGGACCTTAGAATTATGGGTCACCACTGGT 1470
Query 1756 TGTTTCTTCGTCCTCATTGGTTTTGTTGTGTGGTTGTTCGAACATAGAGTCAACACCGAC 1815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1471 TGTTTCTTCGTCCTCATTGGTTTTGTTGTGTGGTTGTTCGAACATAGAGTCAACACAGAC 1530
Query 1816 TTCCGTGGACCGCCTCACCACCAGATCGGCACTAGTTTTTGGTTCTCTTTCTCCACCATG 1875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 TTCCGTGGACCGCCTCACCACCAGATCGGCACTAGTTTTTGGTTCTCTTTCTCCACCATG 1590
Query 1876 GTTTTTGCCCACCGTGAGAAGGTAGTGAGCAACTTAGCAAGGTTTGTGGTGGTTGTATGG 1935
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 1591 GTTTTTGCCCACCGTGAGAAGGTAGTGAGCAATTTAGCAAGGTTTGTGGTGATTGTGTGG 1650
Query 1936 TGCTTTGTGGTGCTTGTGCTCACTCAGAGCTACACAGCAAATCTCACCTCTTTCTTGACG 1995
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1651 TGCTTTGTGGTGCTTGTGCTCACTCAAAGCTACACAGCAAATCTCACCTCTTTCTTGACG 1710
Query 1996 GTGCAACGTTTTCAACCAGCGGCCATAAATGTGAAAGATCTCATAAAAAATGG 2048
|| || |||| |||||||| ||||| || | ||||||||||||||||||||||
Sbjct 1711 GTACAGCGTTCTCAACCAGGGGCCACAACTATGAAAGATCTCATAAAAAATGG 1763
Score = 477 bits (258), Expect = 2e-133
Identities = 306/329 (93%), Gaps = 3/329 (1%)
Strand=Plus/Plus
Query 2059 GGCTATCAACACGGGGCTTTTGTTAAAGATTTTCTAATAAAAGAGGGATTTAATGTTTCT 2118
||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||
Sbjct 1981 GGCTACCAACACGGGGCTTTTGTTAAAGATATTCTAAGAAATGAGGGATTTAATGATTCT 2040
Query 2119 AAGCTCAAGCCTTTTGGGTCTTCCGAAGAATGTC-ACGCGCTTTTGTCCAATGGTAGTAT 2177
|||||||||||||||| |||||||||||||| | |||| |||||||||||||| |||||
Sbjct 2041 CAGCTCAAGCCTTTTGGTTCTTCCGAAGAATG-CGACGCACTTTTGTCCAATGGCAGTAT 2099
Query 2178 ATCAGCAGCTTTCGACGAAGTTGCTTACCTTAGGGCTATCCTTTCTCAATACTGCTCCAA 2237
|||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 2100 TTCAGTAGCTTTCGACGAAATTGCCTACCTTAAGGCTATCCTTTCTCAATACTGCTCCAA 2159
Query 2238 ATATGCCATTGTTGAGCCTACATTTAAGACTGCTGGTTTTGGCTTTGCATTCCCCAGGAA 2297
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2160 ATATGCCATGGTTGAACCTACATTTAAGACTGCTGGTTTTGGCTTTGCATTCCCCAAGAA 2219
Query 2298 TTCACCTTTGACAGGAGATGTCTCAAAGGCTATCTTAAATGTGACTCAAGGAGATGAAAT 2357
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2220 TTCTCCTTTGACAGGAGATGTCTCAAGGGCTATCTTAAATGTGACTCAAGGAGATGAA-T 2278
Query 2358 GCAACACATCGAGAACAAATGGTTCATGA 2386
|| ||||||||||||||||||||||||||
Sbjct 2279 GCGACACATCGAGAACAAATGGTTCATGA 2307
> Ahg887883 jgi|Araly1|887883|Al_scaffold_0041_1
Length=2262
Score = 1559 bits (844), Expect = 0.0
Identities = 992/1063 (93%), Gaps = 12/1063 (1%)
Strand=Plus/Plus
Query 235 ATGAAAGACACTGTGCAGGCTTCAGCTGCAGCCTTGGACCTAATCCAGAACGAGCAAGTG 294
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAAAGACACTGTTCAGGCTTCAGCTGCAGCCTTGGACCTAATCAAGAACGAGCAAGTG 60
Query 295 AGTGCCATCATCGGACCAATAGACTCTATGCAGGCAAAGTTTATGATCAAACTGGCCAAC 354
|| |||||||||||||||| | |||||||||| ||| |||||||||||| ||| ||||||
Sbjct 61 AGCGCCATCATCGGACCAAGAAACTCTATGCAAGCAGAGTTTATGATCAGACTCGCCAAC 120
Query 355 AAAACTCAAGTACCGACCATCTCATTCTCAGCAACAAGCCCTCTTTTAACATCCATCAAA 414
|||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||| |||
Sbjct 121 AAAACTCAAGTACCAACCATCACATTCTCTGCAACAAGTCCTCTTTTAACATCCATTAAA 180
Query 415 AGCGATTACTTCGTCCGAGGCACTATCGATGACTCATACCAGGTCAAAGCCATTGCAGCC 474
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCGATTACTTCGTCCGAGCCACTATCGATGACTCATACCAGGTCAAAGCCATTGCAGCC 240
Query 475 ATATTTGAATCCTTTGGATGGAGAAGTGTCGTCGCCATTTATGTGGACAACGAGTTAGGT 534
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ATTTTTGAATCCTTCGGATGGAGAAGTGTCGTCGCAATTTATGTGGACAACGAGTTAGGT 300
Query 535 GAAGGAATCATGCCTTACTTGTTTGACGCTTTACAAGACGTGCAAGTTGATAGAAGTGTG 594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GAAGGAATCATGCCTTACTTGTTTGACGCTTTACAAGACGTGCAAGTCGATAGAAGTGTG 360
Query 595 ATC-CCCTCGGAGGCTAACGATGACCAGATTCTAAAAGAACTTTATAAGCTCATGACGAG 653
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTCCC-CGGAGGCTAACGATGACCAGATTCTAAAAGAACTTTATAAGCTCATGACGAG 419
Query 654 GCAGACTAGGGTTTTCGTTGTCCACATGGCATCACGTCTTGCTTCACGGATTTTTGAGAA 713
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GCAGACTAGGGTTTTCGTTGTCCACATGGCCTCACGTCTTGCTTCACGGATTTTTGAGAA 479
Query 714 AGCTACAGAGATTGGGATGATGGAGGAAGGGTATGTATGGTTAATGACCAATGGAATGAC 773
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCTAAAGAGATCGGGATGATGGAGGAAGGGTATGTATGGTTAATGACCAATGGAATGAC 539
Query 774 TCATATGATGAGACATATCCATCATGGTCGTAGCTTAAATACTATAGATGGCGTGTTAGG 833
|||||||||||||||||| | ||||||||||||||||||| |||||| |||||||||||
Sbjct 540 GCATATGATGAGACATATCAACCATGGTCGTAGCTTAAATAATATAGAGGGCGTGTTAGG 599
Query 834 TGTGAGGAGCCATGTCCCCAAATCGAAAGGGCTCGAAGATTTCCGTTTGAGATGGAA-AA 892
||||||||||||||||||| ||||||||| |||| |||||||| | ||| ||||||| ||
Sbjct 600 TGTGAGGAGCCATGTCCCCCAATCGAAAGAGCTCAAAGATTTCGGCTTGCGATGGAATAA 659
Query 893 GAAATTTC-AAGAAGGAGAATCCATGGCTGAGGGATGATCTTAGCATTTTTGGATTATGG 951
||| ||| || |||||||||||| | |||| |||||||| | ||||||||||||| ||
Sbjct 660 -AAAGTTCGAA-AAGGAGAATCCAACGATGAGAGATGATCTAACCATTTTTGGATTACGG 717
Query 952 GCGTATGATTCAACCACTGCATTGGCCATGGCCGTGGAGAAAACCAACATAAGCAGCTTT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GCGTATGATTCAACCACTGCATTGGCCATGGCCGTGGAGAAAACCAACATAAGAAGCTTT 777
Query 1012 CCGTATAATAATGCGAGTG-GCTCGTCAAATAACATGACAGATTTGGGGA-CGCTACACG 1069
|||||| |||||||||||| | |||||||||||||||||||||||||||| | ||| |
Sbjct 778 CCGTATGATAATGCGAGTGCG-TCGTCAAATAACATGACAGATTTGGGGAAC-CTAGGTG 835
Query 1070 TCTCTCGCTATGGTCCAAGTCTTCTAGAGGCTCTCTCGGAAATAAGATTCAATGGTCTGG 1129
|||||||||| |||| ||||||| || | ||||||||||||||||||||||||||| |||
Sbjct 836 TCTCTCGCTACGGTCAAAGTCTTTTAAATGCTCTCTCGGAAATAAGATTCAATGGTTTGG 895
Query 1130 CAGGA-AGGTTTAATCTCATAGACAGGCAGCTCGAGTCACCAAAGTTTGAGATCATAAAT 1188
||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 CAGGAGAG-TTTAAACTCATAGACAAGCAGCTCGAGTCACCAAAGTTTGAGATCATAAAT 954
Query 1189 TTTGTCGGAAATGAAGAGAGAATTGTCGGATTTTGGACACCGAGCAATGGACTTGTGAAT 1248
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 955 TTTGTAGGAAATGAAGAGAGGATTATCGGATTTTGGACACCGAGCAATGGACTTGTGAAT 1014
Query 1249 GTAAATTCAAACAAAACAACGTCATTTACAGGGGAGAGGTTTG 1291
| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 GCAAATTCAAACAAAACAACTTCATTTACAGGGGAGAGGTTTG 1057
Score = 1066 bits (577), Expect = 0.0
Identities = 678/727 (93%), Gaps = 6/727 (1%)
Strand=Plus/Plus
Query 2121 GCTCAAGCCTTTTGGGTCTTCCGAAGAATGTC-ACGCGCTTTTGTCCAATGGTAGTATAT 2179
||||||||||||||| |||||||||||||| | |||| |||||||||||||| ||||| |
Sbjct 1539 GCTCAAGCCTTTTGGTTCTTCCGAAGAATG-CGACGCACTTTTGTCCAATGGCAGTATTT 1597
Query 2180 CAGCAGCTTTCGACGAAGTTGCTTACCTTAGGGCTATCCTTTCTCAATACTGCTCCAAAT 2239
||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1598 CAGTAGCTTTCGACGAAATTGCCTACCTTAAGGCTATCCTTTCTCAATACTGCTCCAAAT 1657
Query 2240 ATGCCATTGTTGAGCCTACATTTAAGACTGCTGGTTTTGGCTTTGCATTCCCCAGGAATT 2299
||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1658 ATGCCATGGTTGAACCTACATTTAAGACTGCTGGTTTTGGCTTTGCATTCCCCAAGAATT 1717
Query 2300 CACCTTTGACAGGAGATGTCTCAAAGGCTATCTTAAATGTGACTCAAGGAGATGAAATGC 2359
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1718 CTCCTTTGACAGGAGATGTCTCAAGGGCTATCTTAAATGTGACTCAAGGAGATGAAATGC 1777
Query 2360 AACACATCGAGAACAAATGGTTCATGAAACAAAATGATTGTCCTGATCCAAAGACCGCTC 2419
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1778 GACACATCGAGAACAAATGGTTCATGAGACAGAATGATTGTCCTGATCCAAAGACCGCTC 1837
Query 2420 TTTCGTCGAACCGTCTAAGCCTTCGTAGCTTTTGGGGTCTGTTTCTAATAGCAGGCATTG 2479
||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1838 TTTCGTCTAACCGTCTAAGCCTTAGCAGCTTTTCGGGTCTGTTTCTAATAGCAGGCATTG 1897
Query 2480 CTTCATTCTTGGCACTACTCATCTTCGTGTT-TCTTTTCTTGTACGAAAATAGGCATACA 2538
|||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1898 CTTCATTCTTGGCAGTACTCATCTTCGT-TTCCCTTTTCTTGTACGAAAATAGGCATACA 1956
Query 2539 CTATGTGATGATTCCGAAGATTCGATATGGCGTAAGCTAACGTCTTTATTCAGAAACTTC 2598
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1957 CTATGTGAGGATTCCGAAGATTCGATATGGGGTACGCTAACGTCTTTATTCAGAAACTTC 2016
Query 2599 GATGAGAAAGACATAAAGTCGCATACTTTCAAGAGCAGCGCTGTTCATCATGTGAGTTCA 2658
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 2017 GATGAGAAAGACATAAAGTCGCATACTTTCAAGACCAGCGCTGTTCATAATGTGAGTTCA 2076
Query 2659 CCTATGACTCAGTACATTCCGAGCCCTTCAACTTTGCAAATCGCA-CCACGGCCACATAG 2717
||||||||||| |||| |||||||||||||||| |||||| | || ||| ||| ||||||
Sbjct 2077 CCTATGACTCACTACACTCCGAGCCCTTCAACTGTGCAAAGC-CAACCATGGCGACATAG 2135
Query 2718 CCCATCACAAGACAGGGCGTTTGAACTAAGAAGAGTGTCATTTACCCCGAATGAAGAACG 2777
||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2136 CCCGTCACAAAACAGGGGGTTTGAACTAAGAAGAGTGTCTTTTACCCCGAATGAAGAACG 2195
Query 2778 GTTAACTACGCAAACTATACATTTTGAAGATGAAGAATCTGATATTGAATGTGTTGTTGA 2837
||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2196 CTTAACTACGGAAACTATACATCATGAAGATGAAGAATCTGATATTGAATGTGGAGTTGA 2255
Query 2838 ACAATAG 2844
|||||||
Sbjct 2256 ACAATAG 2262
Score = 793 bits (429), Expect = 0.0
Identities = 466/484 (96%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 1462 GACATCTTTGAAGCTGCTCTTAAGAAGTTACCATATTCAGTCATTCCACAATACTACCGT 1521
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1057 GACATCTTTGAAGCTGCTCTTAAGAAGTTGCCATATTCAGTCATTCCACAATACTACCGT 1116
Query 1522 TTCGAGTCTCCGGATGATGACTACGATGACTTGGTCTATAAAG-TCGATAACGGGACTTT 1580
||||||||||| |||||| ||||||||||||||||||| ||| |||| |||||||||||
Sbjct 1117 TTCGAGTCTCCCGATGATCACTACGATGACTTGGTCTA-CAAGCTCGACAACGGGACTTT 1175
Query 1581 GGATGCAGTTGTTGGAGATGTAACCATCACAGCGTACAGATCTTTGTATGCTGACTTTAC 1640
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1176 GGATGCAGTTGTTGGAGATGTAACTATCACAGCGTACAGGTCTTTGTATGCTGACTTCAC 1235
Query 1641 CTTACCATACACAGAGTCAGGAGTGTCTATGATGGTGCCGGTGAGAGACAACGAGAATAA 1700
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1236 GTTACCATACACAGAGTCAGGAGTGTCTATGATGGTGCCGGTGAGAGACAATGAGAATAA 1295
Query 1701 GAACACATGGGTGTTCCTCAAACCTTGGGGCTTAGACTTATGGGTCACCACTGCTTGTTT 1760
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 1296 GAACACATGGGTGTTCCTCAAACCTTGGACCTTAGAATTATGGGTCACCACTGGTTGTTT 1355
Query 1761 CTTCGTCCTCATTGGTTTTGTTGTGTGGTTGTTCGAACATAGAGTCAACACCGACTTCCG 1820
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1356 CTTCGTCCTCATTGGTTTTGTTGTGTGGTTGTTCGAACATAGAGTCAACACAGACTTCCG 1415
Query 1821 TGGACCGCCTCACCACCAGATCGGCACTAGTTTTTGGTTCTCTTTCTCCACCATGGTTTT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TGGACCGCCTCACCACCAGATCGGCACTAGTTTTTGGTTCTCTTTCTCCACCATGGTTTT 1475
Query 1881 TGCCCACCGTGAGAAGGTAGTGAGCAACTTAGCAAGGTTTGTGGTGGTTGTATGGTGCTT 1940
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1476 TGCCCACCGTGAGAAGGTAGTGAGCAACTTAGCAAGGTTTGTGGTGGTTGTGTGGTGCTT 1535
Query 1941 TGTG 1944
||||
Sbjct 1536 TGTG 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107338310410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5