BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29120.1
Length=3048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887884 jgi|Araly1|887884|Al_scaffold_0041_2 4039 0.0
Ahg887883 jgi|Araly1|887883|Al_scaffold_0041_1 767 0.0
> Ahg887884 jgi|Araly1|887884|Al_scaffold_0041_2
Length=2844
Score = 4039 bits (2187), Expect = 0.0
Identities = 2644/2862 (92%), Gaps = 42/2862 (1%)
Strand=Plus/Plus
Query 3 ATGAAAGTGATGAACCCTAGAAAAACTAATAATACCTTTATGTATTACTTTGTCCTGTTC 62
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAAATGATGAACCCTAGAAAAAATAATAATACCTTTATGTACTACTTTGTCCTGTTC 60
Query 63 GTTTGTGGTTTTGTGTTGATGGAGGGTT-GTTTAGGACAAAACCAAACAACTGAAATCAA 121
||||| ||||||||||||||| | |||| |||||||||||| |||||||| |||||||||
Sbjct 61 GTTTGGGGTTTTGTGTTGATGCA-GGTTGGTTTAGGACAAAGCCAAACAAGTGAAATCAA 119
Query 122 AGTAGGAGTAGTGCTTGATCTCCATACTTCATTTTCCAAGCTCTGCCTCACTTCCATTAA 181
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 120 AGTAGGAGTAGTGCTTGATCTCCAAACTTCATTTTCCAAGATCTGCCTCACTTCCATTAA 179
Query 182 CATATCGTTGTCCGATTTCTACAAATATCATTCTGATTACACCACGAGACTTGCGATTCA 241
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 180 CATATCGTTGTCCGATTTCTACAAATATCATGCTGATTACACCACAAGACTTGCCATTCA 239
Query 242 CATTAGAGATTCCATGGAAGATGTTGTCCAGGCCTCATCTGCAGCCTTGGACCTAATCAA 301
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 240 CATCAGAGATTCCATGGAAGATGTTGTCCAGGCCTCATCTGCAGCTTTGGACCTAATTAA 299
Query 302 GAACGAGCAAGTGAGCGCCATCATCGGGCCAAGAACCTCTATGCAAGCTGAGTTCATGAT 361
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GAATGAGCAAGTGAGCGCCATCATCGGGCCAAGAACCTCTATGCAAGCCGAGTTCATGAT 359
Query 362 AAGACTCGCCGATAAATCACAAGTACCGACCATCACATTCTCTGCAA-CATGCCCTCTTC 420
||||||||| ||||||| |||||||||||||||||||||||| ||| || ||||||||
Sbjct 360 CAGACTCGCCAATAAATCTCAAGTACCGACCATCACATTCTCTACAACCA-GCCCTCTTA 418
Query 421 TGACATCCATCAACAGCCCTTACTTTGTCCGAGCCACTCTCGATGACTCATCCCAGGTCA 480
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 419 TGACATCCATCAACAGCCCTTACTTCGTCCGAACTACTCTCGATGACTCATCCCAGGTCA 478
Query 481 AAGCCATTGCGGCCATTGTCAAATCCTTCGGGTGGAGAAATGTAGTTGCCATTTATGTGG 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 AAGCCATTGCGGCCATTGTCAAATCCTTCGGGTGGAGAAACGTAGTTGCCATTTATGTGG 538
Query 541 ACAACGAATTCGGAGAAGGAAT-ATTGCCATTA-TTGACTGACGCTTTACAAGACGTGCA 598
|||||||||||||||||||||| ||| || || || ||| |||||||||||||||||||
Sbjct 539 ACAACGAATTCGGAGAAGGAATAATT-CC-CTACTTAACTAACGCTTTACAAGACGTGCA 596
Query 599 AGCTTTTGTAGTCAATAGATGTTTGATCCCTCAGGAGGCTAATGATGATCAAATTCTCAA 658
|||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 597 AGCTCTTGTAGTCAATAGATGTTTGATCCCTCAGGAAGCTAATGATGATCAGATTCTCAA 656
Query 659 GGAGCTTTATAAGCTAATGACGATGCAGACGAGGGTATTCGTTGTCCACATGCCACCAAC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGAGCTTTATAAGCTAATGACGATGCAGACGAGGGTATTCGTTGTCCACATGCCACCAAC 716
Query 719 TCTCGGTTTTCGtttttttCAGAAAGCTAGAGAGATTGGTATGATGGAGGAAGGATATGT 778
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 TCTCGGATTTCGGCTTTTTCAGAAAGCTAGAGAGATTGGTATGATGAAGGAAGGATATGC 776
Query 779 ATGGTTATTGACAGATGGAGTGATGAATTTGTTGAAATCTAATGAACGCGGTAGCAGCTT 838
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 ATGGTTATTGACAGATGGAGTGATGAATTTGGTGAAATCTAATGAACGCGGTAGCAGCTT 836
Query 839 GGAGAATATGCAAGGGGTTTTGGGTGTAAGGAGCCATATCCCCAAATCGAAGAAGCTCAA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 837 GGAGAATATGCAAGGGGTTTTGGGTGTAAGGAGCCATATCCCCAAATCGAAGGAGCTCGA 896
Query 899 AAATTTCAGATTGAGATGGGAA-AAAATGTTTCCTAAGAAGGGGAATGATGAAGAGATGA 957
| ||||||||||||||| |||| |||| |||| |||||||||||||||||||||| ||
Sbjct 897 AGATTTCAGATTGAGAT-GGAAGAAAAGGTTTGATAAGAAGGGGAATGATGAAGAGCCGA 955
Query 958 ACATTTTTGCGTTAAGGGCATATGATTCGATCACTGCCTTAGCAATGGCCGTGGAGAAAA 1017
|||||||||| |||||||||||||||||||||||||| || || |||||||| |||||||
Sbjct 956 ACATTTTTGCATTAAGGGCATATGATTCGATCACTGCTTTGGCCATGGCCGTAGAGAAAA 1015
Query 1018 CCAATATAAAGAGCTTGCGGTATGATCATCCGATCGCTTC-AGGAAATAATAAGACAAAT 1076
||| ||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||
Sbjct 1016 CCAGTATAAAGAGCTTGCGGTATGAGCATCCGATCGCTTCTA-GAAATAATAAGACAGAT 1074
Query 1077 TTGGGGACATTAGGGGTCTCTCGCTACGGTCCAAGTCTTCTTAAGGCTCTTTCGAATGTA 1136
| | ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 CTAGCGACCTTCGGGGTCTCTCGCTACGGTCCAAGTCTTCTAAAGGCTCTTTCGAATGTA 1134
Query 1137 AGATTCAATGGTTTAGCCGGAGAGTTTGAGCTCATTAACGGGCAGCT-AGAATCATCAGT 1195
|||||||| |||||||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 1135 AGATTCAAAGGTTTAGCCGGAGAGTTTGAACTCGTTAACGGGCAGCTCA-AATCATCAGT 1193
Query 1196 GTTTGACGTCATCAATATTATTGGAAGTGAAGAGAGAATTATTGGATTATGGAGACCAAG 1255
|||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1194 GTTTGAGGTCATCAATATTATTGGAAATGAAGAGAGAATTATCGGATTCTGGAGACCAAG 1253
Query 1256 CAATGGAATTGTTAATGCAAAGTCAAAAAACACTACGTCGGTTTT-AGGGGAGAGGTTGG 1314
||||||| |||| |||||||||||||||||||| ||||| ||||| | |||||||||| |
Sbjct 1254 CAATGGACTTGTGAATGCAAAGTCAAAAAACACCACGTC-GTTTTCAAGGGAGAGGTTTG 1312
Query 1315 GGCCGGTGATATGGCCCGGTAAGTCGAAAGATGTTCCGAAAGGTTGGCAGATTCCAACAA 1374
||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||
Sbjct 1313 GGCCGGTGATATGGCCCGGTAAGTCGAGAGTTATTCCGAAAGGTTGGGAGATTCCAACAA 1372
Query 1375 ACGGAAAGATGCTTAGAGTGGGCATTCCAGTGAAGAAAGGCTTCTTAGAA-TTTGTGGAT 1433
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1373 ACGGGAAGATGCTTAGAGTGGGCATTCCAGTGAAGAAAGGCTTCTTA-AATTTTGTGGAT 1431
Query 1434 GCAAAGATAGATCCGATCAGTAACGCAATGACCCCAACGGGTTACTGTATTGA-GATATT 1492
||||||| |||||||||||||||||| |||| ||||||||||||||| ||||| | | ||
Sbjct 1432 GCAAAGACAGATCCGATCAGTAACGCTATGATCCCAACGGGTTACTGCATTGACG-TCTT 1490
Query 1493 CGAAGCTGTTCTTAAGAAGTTGCCTTACTCCGTCATTCCTAAATATATTGCTTTCTTGTC 1552
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1491 TGAAGCTGTTCTTAAAAAGTTGCCTTACTCGGTCATTCCTAAATATATTGCTTTCTTGTC 1550
Query 1553 TCCAGATGAGAACTATGATGAAATGGTATACCAAGTATACACCGGGGCCTATGACGCAGT 1612
||||||||||||||| || ||||||||||||||||| |||| |||| | || || |||||
Sbjct 1551 TCCAGATGAGAACTACGACGAAATGGTATACCAAGTCTACAACGGGACGTACGATGCAGT 1610
Query 1613 TGTGGGAGATGTAACCAT-AGTAGCAAACAGGTCATTGTATGTCGATTTCACGCTACCGT 1671
||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1611 TGTAGGAGATGTAACCATCAG-AGCGAACAGGTCATTGTATGTCGATTTCACGCTACCGT 1669
Query 1672 ACACAGAGTCTGGAGTGTCTATGATGGTACCCCTCAAGGACAACAAGAAC------ACAT 1725
|| ||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 1670 ACTCAGAGTCTGGAGTGTCTATGATGGTGCCTCTCAAGGACAACAAGAACAAGAATACAT 1729
Query 1726 GGGTGTTCCTCAGACCTTGGAGCTTAGACCTATGGGTCACCACTGCTTGCTTTTTCGTAT 1785
|||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1730 GGGTGTTCCTCAAACCTTGGAGCTTAGACCTATGGGTCACGACCGCTTGCTTTTTCGTAT 1789
Query 1786 TCATTGGGTTTATCGTGTGGATTTTAGAACATAGAGTCAACACCGACTTTCGCGGACCGC 1845
||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1790 TCATTGGGTTTGTTGTGTGGATTTTAGAACACAGAGTCAACACCGACTTTCGTGGACCAC 1849
Query 1846 CTCACCACCAAATAGGCACCAGTTTTTGGTTCGCTTTCTCCACTATGAACTTTGCCCACC 1905
||||||| || |||||||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 1850 CTCACCATCAGATAGGCACCAGTTTCTGGTTCGGTTTCTCCACTATGAACTTTGCCTACC 1909
Query 1906 GTGAGAAGGTGGTGAGTAATTTAGCGAGGTTTGTGGTGTTGGTGTGGTGCTTCGTGGTGC 1965
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 GTGAGAAGGTGGTGAGCAACTTAGCGAGGTTTGTGGTGTTGGTGTGGTGCTTCGTGGTGC 1969
Query 1966 TTGTGCTGATTCAGAGCTATACAGCGAATCTCACATCTTTCTTCACAGTAAAACTGTTGC 2025
||||||| |||||||||||||||||||||||||| |||||| |||||||| ||| ||| |
Sbjct 1970 TTGTGCTTATTCAGAGCTATACAGCGAATCTCACCTCTTTCCTCACAGTACAACGGTTCC 2029
Query 2026 AACCAACGGTTACAAATTGGAAAGATCTCATAAAATTTAACAAAAATATTGGGTACCAAC 2085
||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2030 AACCAGCGGTCACAAATTGGAAAGATCTCATAAAAAATAACAAATATATTGGGTACCAAC 2089
Query 2086 GGGGCACTTTCGTGCGTGAACTTTTGAAAAGTCAAGGATTTGATGAATCACAGCTCAAAC 2145
||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||
Sbjct 2090 AAGGCACTTTCGTGCGTGAACTTTTGATAAGTCAAGGATTTCATGAGTCACACCTCAAAC 2149
Query 2146 CTTTTGGTTCTGCCGTAGAATGTGACGAGCTTTTTTCCAATGGGACAATCACAGCATCTT 2205
||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 2150 CTTTTGGTTCTGCCGAAGAATGCGATGAGTTTTTTTCCAATGGGACAATCACAGCATCTT 2209
Query 2206 TTGACGAAGTGGCCTACATTAAAGTTATCCTTTCTCAGAATTCCTCCAAATATACTATGG 2265
| ||||||||||||||||||||||||||||||||| |||| | |||||||||| | ||||
Sbjct 2210 TCGACGAAGTGGCCTACATTAAAGTTATCCTTTCTGAGAACTGCTCCAAATATGCCATGG 2269
Query 2266 TTGAACCATCCTTTAAGACTGCTGGTTTTGGCTTTGTATTCCCCAAAAAATCACCTTTGA 2325
||||||| ||||| |||||||| ||||| ||||||| ||||||||| || ||||||||||
Sbjct 2270 TTGAACCTTCCTTCAAGACTGCCGGTTTCGGCTTTGCATTCCCCAAGAATTCACCTTTGA 2329
Query 2326 CGGATGATGTCTCAAGGGCGATCTTGAATGTGACACAAGGCGAAGAAATGCAACATATTG 2385
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 2330 CAGATGATGTCTCAAGGGCCATCTTGAATGTGACTCAAGGCGAAGAAATGCAACTTATTG 2389
Query 2386 AGAATAAATGGTTTAAGAAACCAAA-TAATTGTCCAGATCTAAACACTTCTCTGTCCTCC 2444
||||||||||||| |||||| |||| ||||||||| |||||||||| | |||| || |||
Sbjct 2390 AGAATAAATGGTTCAAGAAA-CAAAGTAATTGTCCTGATCTAAACAGTACTCTTTCGTCC 2448
Query 2445 AACCATCTCAGCCTGAGTAGCTTCTGGGGTCTGTTTCTTATAGCAGGCATAGCTTCATTC 2504
|||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2449 AACCATCTCAGCCTTAGCAGCTTCTGGGGTCTGTTTCTAATAGCAGGCATTGCTTCATTC 2508
Query 2505 TTGGCACTTCTCATCTTCGTGGCCAACTTCTTGTACGAACACAAGCACACGCTCTTTGAT 2564
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2509 TTGGCACTTCTCATCTTCGTGGCCAACTTCTTGTACGAACACAAGCACACACTCTTTGAT 2568
Query 2565 GACTCCGAAAATTCTTTCCGTGGAAAGCTAAAATTTTTGGTTAGAAACTTTGATGAGAAA 2624
|||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2569 GACTCCGAAAATTCCTTCCGTGGAAAGCTAAATTTTTTGGTTAGAATCTTTGATGAGAAA 2628
Query 2625 GACATAAAGTCGCATATGTTCAAGGAGAATGCCGTTCATAATGTGAGTTCACCTATTACT 2684
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2629 GACTTTAAGTCGCATATGTTCAAGGAGAATGCCGTTCATAATGTGAGTTCACCTATTACT 2688
Query 2685 CAAGGAAGTTCAAGCCCTTTGACCGATCAGAGCACTCCATTGCCGCGAAGTCCGGAACAG 2744
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 2689 CAAGGAAGTTCAAGCCCTTTGACCGATCATAGCACTCCATTGCCACGAAGTCCGGCACAA 2748
Query 2745 TATAGGGA--A-TTAGAGCTAAGAAGAGTGTCTTCCATCTCGAGCGGTGAACTTTTCACT 2801
||||||| | || |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2749 AATAGGGATCAGTTTGAGCGAAGAAGAGTGTCTTCCATCTCGAGCGGAGAACTTTTCAC- 2807
Query 2802 ACGCAATCAGAACAAGTTGAAGATGAGGAATCTGCTATAATT 2843
| ||||||||||||||||||||||||||||| |||
Sbjct 2808 --G------GAACAAGTTGAAGATGAGGAATCTGCTATTATT 2841
> Ahg887883 jgi|Araly1|887883|Al_scaffold_0041_1
Length=2262
Score = 767 bits (415), Expect = 0.0
Identities = 870/1080 (81%), Gaps = 69/1080 (6%)
Strand=Plus/Plus
Query 266 TGTCCAGGCCTCATCTGCAGCCTTGGACCTAATCAAGAACGAGCAAGTGAGCGCCATCAT 325
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TGTTCAGGCTTCAGCTGCAGCCTTGGACCTAATCAAGAACGAGCAAGTGAGCGCCATCAT 71
Query 326 CGGGCCAAGAACCTCTATGCAAGCTGAGTTCATGATAAGACTCGCCGATAAATCACAAGT 385
||| ||||||| |||||||||||| ||||| ||||| ||||||||| | ||| | |||||
Sbjct 72 CGGACCAAGAAACTCTATGCAAGCAGAGTTTATGATCAGACTCGCCAACAAAACTCAAGT 131
Query 386 ACCGACCATCACATTCTCTGCAACATGCCCTCTTCTGACATCCATCAACAGCCCTTACTT 445
||| ||||||||||||||||||||| | |||||| | |||||||| || ||| ||||||
Sbjct 132 ACCAACCATCACATTCTCTGCAACAAGTCCTCTTTTAACATCCATTAAAAGCGATTACTT 191
Query 446 TGTCCGAGCCACTCTCGATGACTCATCCCAGGTCAAAGCCATTGCGGCCATTGTCAAATC 505
|||||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||
Sbjct 192 CGTCCGAGCCACTATCGATGACTCATACCAGGTCAAAGCCATTGCAGCCATTTTTGAATC 251
Query 506 CTTCGGGTGGAGAAATGTAGTTGCCATTTATGTGGACAACGAATTCGGAGAAGGAAT-AT 564
|||||| ||||||| ||| || || ||||||||||||||||| || || |||||||| ||
Sbjct 252 CTTCGGATGGAGAAGTGTCGTCGCAATTTATGTGGACAACGAGTTAGGTGAAGGAATCAT 311
Query 565 TGCCATTA-TTGACTGACGCTTTACAAGACGTGCAAGCTTTTGTAGTCAATAGATGTTTG 623
||| ||| ||| ||||||||||||||||||||||| | ||| || | ||| |
Sbjct 312 -GCC-TTACTTGTTTGACGCTTTACAAGACGTGCAAG-TCGA-TAG--AA--G-TGT--G 360
Query 624 ATC-CCTCAGGAGGCTAATGATGATCAAATTCTCAAGGAGCTTTATAAGCTAATGACGAT 682
||| || | ||||||||| ||||| || ||||| || || ||||||||||| |||||||
Sbjct 361 ATCTCCCC-GGAGGCTAACGATGACCAGATTCTAAAAGAACTTTATAAGCTCATGACGAG 419
Query 683 GCAGACGAGGGTATTCGTTGTCCACATG-CCACCAAC-TCTCGGTTTTCGtttttttCAG 740
|||||| ||||| ||||||||||||||| || | | | ||| | || || ||||| ||
Sbjct 420 GCAGACTAGGGTTTTCGTTGTCCACATGGCCTC-A-CGTCTTGCTTCACGGATTTTTGAG 477
Query 741 AAAGCTAGAGAGATTGGTATGATGGAGGAAGGATATGTATGGTTATTGAC-AGATGGAGT 799
||||||| |||||| || |||||||||||||| |||||||||||| |||| | ||||| |
Sbjct 478 AAAGCTAAAGAGATCGGGATGATGGAGGAAGGGTATGTATGGTTAATGACCA-ATGGAAT 536
Query 800 GATGAATTTGTTGAAATC-TAATGAACGC--GGTAGCAGCTTGGAGAATAT-GCAAGGG- 854
|| | || || ||| | | || | ||| | ||| | ||||| | ||||| | | |||
Sbjct 537 GACGCATATGATGAGA-CATA-TCAAC-CATGGTCGTAGCTTAAATAATATAG-A-GGGC 591
Query 855 GTTTTGGGTGTAAGGAGCCATATCCCCAAATCGAA-GAAGCTCAAAAATTTCAGATTGAG 913
|| || ||||| ||||||||| ||||| ||||||| || ||||||| ||||| | ||| |
Sbjct 592 GTGTTAGGTGTGAGGAGCCATGTCCCCCAATCGAAAGA-GCTCAAAGATTTCGGCTTGCG 650
Query 914 ATGGGA-AAAAATGTTTCCTAAGAAGGGGAAT-----GATGA-AGA-GATG-AAC-ATTT 963
|||| | ||||| ||| | || |||| |||| ||||| ||| ||| ||| ||||
Sbjct 651 ATGGAATAAAAA-GTT-CG-AA-AAGGAGAATCCAACGATGAGAGATGATCTAACCATTT 706
Query 964 TTGCG-TTAAGGGCATATGATTCGATCACTGCCTTAGCAATGGCCGTGGAGAAAACCAAT 1022
||| | ||| |||| |||||||| | |||||| || || ||||||||||||||||||||
Sbjct 707 TTG-GATTACGGGCGTATGATTCAACCACTGCATTGGCCATGGCCGTGGAGAAAACCAAC 765
Query 1023 ATAAAGA-GCTTGCGGTATGATCATCCGA-TCGCTTCAGG-AAATAATAAGACAAATTTG 1079
|||| || |||| | ||||||| || ||| | || || | |||||| | |||| |||||
Sbjct 766 ATAA-GAAGCTTTCCGTATGATAATGCGAGT-GCGTC-GTCAAATAACATGACAGATTTG 822
Query 1080 GGGA-CATTAGGGGTCTCTCGCTACGGTCCAAGTCTTCTTAAG-GCTCTTTCG-AATGTA 1136
|||| | | ||| |||||||||||||||| ||||||| |||| ||||| ||| || ||
Sbjct 823 GGGAACCT-AGGTGTCTCTCGCTACGGTCAAAGTCTT-TTAAATGCTCTCTCGGAAA-TA 879
Query 1137 AGATTCAATGGTTTAGCCGGAGAGTTTGAGCTCATTA-ACGGGCAGCTAGAATCATCAGT 1195
|||||||||||||| || ||||||||| | ||||| | || |||||| || ||| ||
Sbjct 880 AGATTCAATGGTTTGGCAGGAGAGTTTAAACTCAT-AGACAAGCAGCTCGAGTCACCAAA 938
Query 1196 GTTTGACG-TCATCAATATTATTGGAAGTGAAGAGAGAATTATTGGATTATGGAGACCAA 1254
|||||| | |||| ||| || | |||| ||||||||| ||||| ||||| |||| ||| |
Sbjct 939 GTTTGA-GATCATAAATTTTGTAGGAAATGAAGAGAGGATTATCGGATTTTGGACACCGA 997
Query 1255 GCAATGGAATTGTTAATGCAAAGTCAAA-AAACACTACGTCGGTTTT-AGGGGAGAGGTT 1312
|||||||| |||| |||||||| ||||| ||| || || || ||| ||||||||||||
Sbjct 998 GCAATGGACTTGTGAATGCAAATTCAAACAAA-ACAACTTCA-TTTACAGGGGAGAGGTT 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115108720390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5