BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29210.1
Length=2922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933395 jgi|Araly1|933395|scaffold_401383.1 1810 0.0
> Ahg933395 jgi|Araly1|933395|scaffold_401383.1
Length=2627
Score = 1810 bits (980), Expect = 0.0
Identities = 1200/1303 (92%), Gaps = 28/1303 (2%)
Strand=Plus/Plus
Query 1479 AAGGTTGCCTTCACCACCCCCTAGGCGTGCAGGATTACCTTCACCACCCCCTGCGCAAAG 1538
||| |||||||||||||| || | | ||| || |||||||||||| ||| ||||||
Sbjct 1335 AAGATTGCCTTCACCACCGGCT--GAGCAAAGG-TTGCCTTCACCACCCGCTGGGCAAAG 1391
Query 1539 GTTGCCTTCACCACCCCCTAGGCGTGCAGGATTACCTTCACCAATGAGGATTGGAGGATC 1598
||| ||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1392 GTTACCTCCACCACTCCCTAGGCGTGCAGGATTACCTTCGCCAATGAGGGTTGGAGGATC 1451
Query 1599 TCATGCAGCCAATCACCTGGAATCACCATCACCCAG---C---TCATTGTCCCCTCCTGG 1652
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1452 TCATGCAGCCAATCACCTGGAATCACCATCACCCAGACCCAGTTCACTGTCCCCTCCTGG 1511
Query 1653 TAGGAAAAAAGTGTTACCATCTCCACCTGTTAGAAGACGCAGGTCACTGACACCTGAC-G 1711
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 1512 TAGGAAAAAAGTGTTACCATCTCCACCTGTTAGAAGACGTAGGTCACTGACACCTG-CTG 1570
Query 1712 AAGAGCGAGTCTCCCTGTCACAAGGTGGACGCCAT--A-C---TTCCCCTTCACATATCA 1765
||||||||||||||||||||| || |||||||||| | | |||||||||||| |||
Sbjct 1571 AAGAGCGAGTCTCCCTGTCACCAGCTGGACGCCATGAAGCAGAATCCCCTTCACATGTCA 1630
Query 1766 AGCAAGATGGATCTATGTCACCTGTTAGGGGTCGAGGTAAATCTTCTCCTTCATCTCGAC 1825
|||||| |||||||| |||||||| |||||||| |||||||||||| || | | ||||||
Sbjct 1631 AGCAAGGTGGATCTACGTCACCTGCTAGGGGTCAAGGTAAATCTTC-CCCT-A-CTCGAC 1687
Query 1826 ATCAGAAAGCGCGCTCTCCTGTTCGGCGCAGATCACCAACACCTGTCAACCGGCGAAGTC 1885
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1688 ATCAGAAAGCGCGCTCTCCTGTTCGGCGCAGATCACCAACTCCTGTCAACCGGCGAAATC 1747
Query 1886 GAAGATCTT-CATCTGCTTCACGATCACCTGA-T--AGACGCAGGAGACGGTCTCCATCT 1941
|||||| || |||||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 1748 GAAGAT-TTCCATCTGCTTCACGATCACCTGATTACAGACGTAGGAGACGGTCTCCATCT 1806
Query 1942 TCGAGCAGATCTCCTTCTAGGTCGCGATCACCTCCTGTTCTTCATAGATCTCCTTCTCCA 2001
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1807 TCGAGCAGGTCTCCTTCTAGGTCTCGATCACCTCCTGTTCTTCATAGATCTCCTTCTCCA 1866
Query 2002 CGTGGAAGAAAACATCAGAGAGAGAGAAGATCTCCTGGGCGTCTATCTGAAGAACAAGAT 2061
||||||||||||||||||| || |||||||| ||||||| |||||||||||||||||||
Sbjct 1867 TGTGGAAGAAAACATCAGAGGGACAGAAGATCGCCTGGGCATCTATCTGAAGAACAAGAT 1926
Query 2062 AGGGTTCAAAATTCCAAGCTGTTAAAGAGAACTTCAGTGCCTGATACTGACAAGAGGAAA 2121
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 AGGGTTCAAAATTCGAAGCTGTTAAAGAGAACTTCAGTGCCTGATACTGACAAGAGGAAA 1986
Query 2122 CAATTACCAGAGAAGTTGCTAGAAGTTGGGCGTGTAGAACATTATAAGGAGCAGGAGAGA 2181
|||||||||||| || || |||||||||||||||| || ||||||| |||||| ||||||
Sbjct 1987 CAATTACCAGAGGAGGTGTTAGAAGTTGGGCGTGTCGACCATTATAGGGAGCAAGAGAGA 2046
Query 2182 AAGAGTGATAAGTTGTCAGAGAAGCGATCTGTTCACAG-ACACCATGGTTCACAGATGTC 2240
||||||||||||||| |||||| ||| || | ||| || || ||||||||||||||||||
Sbjct 2047 AAGAGTGATAAGTTGACAGAGAGGCGTTCCGGTCATAGAAC-CCATGGTTCACAGATGTC 2105
Query 2241 CCCAGTAGAAAATTCAGAAGGAAGGAGTCGGCCTGTTTCTAGTAAAGTGAAAGACAGTGA 2300
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 2106 CCCAGTAGAAAATTCAGAAGGAAAGAGTCGGCCTGTTTCTGGTAAAGTGAAAGACAGTGA 2165
Query 2301 GCAGGTTGAGAAAGAGGATAACAGCGACCTGGATGCAAACCTTTCCTGTGATTCTAAGGA 2360
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2166 GCAGGTTGAGAAAGATGATAACAGCGACCTGGATGCAAACCTTTCCTCTGATTCTAAGGA 2225
Query 2361 TACCATCAGACATCAAATTAAGGATAAAAATAGAAGAAAGAATAAAAGGTCTTCAAGGGA 2420
| || |||||||| || |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2226 AAGCAGCAGACATCGAACTAAGGATAAAAAGAGAAGAAAGAATAAAAGGTCTTCGAGGGA 2285
Query 2421 AGAAGTATCTTCAGATGATAATGGCAGTTCTGATTCCGACGTAGATGATaggaaggaggc 2480
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2286 AGAAGTATCTTCAGATGATAATGGCAGTTCTGATTCTGACCTAGATGATAGGAAGGAGGC 2345
Query 2481 taaaaggaggaggaaggaggagaagaaaacgagaaaggaggagaagaaacgtaggcgaga 2540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 TAAAAGGAGGAGGAAGGAGGAGAAGAAAACGAGAAAGGAGGAGAAGAAACGTAGGCGAGA 2405
Query 2541 ggagagaCATCGTAAAAGGGAAGAACGTCGTGGTGGAAAGGAGAAGCATAAGAAACAAGA 2600
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 2406 GGAGAGACGTCGTAAAAGGGAAGAACGTCGTGGTGGAAAGGAGAAACATAAGAATCGAGA 2465
Query 2601 GCTTTCTGATACTTCAGAAGGTGAAGTTGAGGCCCGTCCTAAGATTAAAAAAGGGGAGGA 2660
||| |||||||||||||| || |||| ||||||||||||||||| |||||||||||||||
Sbjct 2466 GCTATCTGATACTTCAGAGGGAGAAGCTGAGGCCCGTCCTAAGAATAAAAAAGGGGAGGA 2525
Query 2661 ATCTGATCCAAAGAGGCTTGAAATTGAGTTGCGAAACAAAGCACTCGAGTCATTGAAAGC 2720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 GTCTGATCCAAAGAGGCTTGAAATTGAGTTGCGAAACAAAGCACTCGAGTCATTGAAAGC 2585
Query 2721 AAAGAAGGGCATTAGCCACTAAGTCCCTTGTCCAGCGTTATTT 2763
|||||||||||| ||||||||||||| || |||||||||||||
Sbjct 2586 AAAGAAGGGCATCAGCCACTAAGTCC-TTATCCAGCGTTATTT 2627
Score = 1779 bits (963), Expect = 0.0
Identities = 1313/1471 (89%), Gaps = 68/1471 (5%)
Strand=Plus/Plus
Query 85 TGCTTCCACAAACCCTAAACTATGTCCGGCGGTTTCTTCCGGGGTACTTCCGCCGAGCAG 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGCTTCCACAAACCCTAAACTATGTCCGGCGGTTTCTTCCGGGGTACTTCCGCCGAGCAG 60
Query 145 GATACTCGGTTTTCTAACAAGCAAGCTAAATTGATGAAAAGCCAGAAATTTGCTCCGGAG 204
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 61 GATACTCGGTTTTCTAACAAGCAAGCCAAATTGATGAAGAGTCAGAAATTTGCTCCGGAG 120
Query 205 TTAGAGAATCTGGTGGATATCACTAAAGTGAAGATGGATGTTATGAAACCTTGGATTGCG 264
|| ||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 TTGGAGAATCTGGTGGATGTGACTAAAGTGAAGATGGATGTAATGAAGCCTTGGATTGCG 180
Query 265 ACTAGAGTCACTGAGCTTCTTGGTATTGAAGATGAAGTGCTGATTAACTTTATCTATGGT 324
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 ACTAGAGTCACTGAGCTTCTTGGTTTTGAAGATGAAGTGCTGATTAACTTTATCTATGGT 240
Query 325 CTGCTTGACGGGAAGGTAGTGAATGGTAAGGAGATTCAGATAACGCTAACTGGATTCATG 384
|||||||| |||||||||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 241 CTGCTTGATGGGAAGGTAGTGAACGGTAAGGAGATTCAGATATCGTTAACTGGATTCATG 300
Query 385 GAGAAAAATACTGGCAAATTTATGAAAGAACTTTGGACACTTCTTCTAAGCGCACAGAAT 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAAAAATACTGGCAAGTTTATGAAAGAACTTTGGACACTTCTTCTAAGCGCACAGAAT 360
Query 445 AATCCAAGTGGTGTTCCACAGCAGTTTTTAGATGCTAGAGCTGCTGAAACaaagaagaaa 504
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AATTCAAGTGGTGTTCCACAGCAGTTTTTAGATGCTAGAGAAGCTGAAACAAAGAAGAAA 420
Query 505 caggaagaag-----c----a--a-a-----t-g-aaat--aat-ga-a-gaagagggag 540
|||||||||| | | | | | | |||| ||| || | ||||||||||
Sbjct 421 CAGGAAGAAGCAATACAAAAAGCAGATCGGTTAGCAAATGAAATAGAGAGGAAGAGGGAG 480
Query 541 ggagataagaagaaCATTGAGCACGATATATTGAGGAAAATAGACAGCGGTGTAGAACAT 600
||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 481 GGAGAAAAGAAGAACCCTGAGCATGATATATTGAGGAAAATAGACAGCGGCGTAGAACAC 540
Query 601 AAGGAGACAAATGGCATGGATGCAAAACCTTCAAGAGATCGTCCAGAGGATGGGAGAAGG 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGGAGACAAATGGCATGGATACAAAACCTTCAAGAGATCGTCCAGAGGATGGGAGAAGG 600
Query 661 GCTGACGAGAAGAATGGTGTAAAAGAAAGGAGAAGGGATCTGATACCTCCACGTCGCGGA 720
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 601 GCTGACGAGAAGAATGGTGTGAAAGAAAGGAGAAGGGATCTGATACCTCCACGTGGCAGA 660
Query 721 GATGCATCCCGCTCACCCCTTAGAGGGTCACGTTCTAGGTCAATCAGCAAAACAAATTCA 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GATGCATCCCGCTCACCCCTTAGGGGGTCACGTTCTAGGTCAATCAGCAAAACAAATTCA 720
Query 781 GGCTCGAAAAGTTATTCTGGCGAACGGAAATCCAGGAGCACATCTCAATCATCAGATGCC 840
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 721 GGCTCGAAAAGTTATTCTGGTGAACGGAAATCCAGGAGCTTGTCTCAATCATCAGATGCC 780
Query 841 TCCATCTCACCTAGAAAGCGAAGATTGTCGAATTCAAGACGTAGATCCAGATCACGTTCC 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCCATCTCACCTAGAAAGCGGAGATTGTCGAATTCAAGACGTAGATCCAGATCACGTTCC 840
Query 901 GTGCGTAGGTCTCTGTCTCCTCGGCGACGTAGGATACACTCTCCTT-TCAGAAGCAGGTC 959
||||||||||||| |||||||||||||||| |||||| ||||||| | ||||||||||
Sbjct 841 TTGCGTAGGTCTCTATCTCCTCGGCGACGTACGATACATTCTCCTTAT-GGAAGCAGGTC 899
Query 960 GCGGTCACCTATTAGACGTCACAGGCGACCTACGCATGAGGGACGCCGTCAATCACCAGC 1019
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 900 ACGGTCACCTATTAGACGTCACAGGCGACATACGCCTGAGGGACGCCGTCAATCACCAGC 959
Query 1020 CCCTTCAAGACGTCGCCGTTCTCCATCCCCACCTGCTA-GACGGCGCAGGTCACCATCCC 1078
||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 960 CCCTTCAAGGCGTCGCCGTTCTCCATCCCCACCTGCTAGGA-GGCGCAGGTCACCATTCC 1018
Query 1079 CACCTGCTA-GACGGCGCAGGTCACCATCACCACCTGCTA-GACGGCACAGGTCTCCAAC 1136
||||| ||| || |||||||||||||||| |||||||||| || ||| |||||| ||| |
Sbjct 1019 CACCTTCTAGGA-GGCGCAGGTCACCATCCCCACCTGCTAGGA-GGCGCAGGTCACCATC 1076
Query 1137 ACCACCTGCAAGGCAGCGCAGGTCACCATCGCCCCCTGCTAGGCGTCACCGTTCTCCACC 1196
|||||||| | | | | | | | | || | ||||||| ||| ||
Sbjct 1077 ACCACCTGTTA-G-A---C--G--------G----C-G-TA-G-GTCACCG---TCC-CC 1109
Query 1197 GCCAGCTAGGCGGCGTAGGTCTCCTTCACCGCCAGCTAGGCGGCGTAGGTCTCCTTCACC 1256
|| ||||||| ||| ||||| || || || || |||||||| || || | || |||
Sbjct 1110 ACCTGCTAGGCCGCGCAGGTCACCATCGCCCCCTGCTAGGCGTCG-CCGT-T-CTCCACT 1166
Query 1257 GCCAGCTAGGCGGCGTAGGTCTCCATCTCCACTCTA-C-AGGCGTAACAGGTCTCCATCT 1314
||| |||||||||||||||||| || || | | | | ||||| |||||||||||||
Sbjct 1167 GCCCTTTAGGCGGCGTAGGTCTCCTTCACCGC-C-AGCTAGGCGGCGCAGGTCTCCATCT 1224
Query 1315 CCACTCTATAGGCGTAACAGGTCACGGTCACCGCTGGCTAAGCGGGGAAGGTCTGACTCA 1374
||||||||||| ||||||||||||| |||||| |||| |||||||| |||||||||||||
Sbjct 1225 CCACTCTATAGTCGTAACAGGTCACTGTCACCACTGGTTAAGCGGGAAAGGTCTGACTCA 1284
Query 1375 CCAGGGAGGTCTCCGTCACCAGTGGCTAGGCTCAGGGATCCCACTGGGGCAAGATTGCCT 1434
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1285 CAAGGGAGGTCTCCGTCACCAGTGGCTAGGCGCAGGGATCCCACTGGGGCAAGATTGCCT 1344
Query 1435 TCACCATCCAT-TGAGCAAAGATTGCCTTCACCACCCGTTGCACAAAGGTTGCCTTCACC 1493
|||||| || ||||||||| |||||||||||||||| || |||||||| ||| ||||
Sbjct 1345 TCACCA-CCGGCTGAGCAAAGGTTGCCTTCACCACCCGCTGGGCAAAGGTTACCTCCACC 1403
Query 1494 ACCCCCTAGGCGTGCAGGATTACCTTCACCA 1524
|| |||||||||||||||||||||||| |||
Sbjct 1404 ACTCCCTAGGCGTGCAGGATTACCTTCGCCA 1434
Score = 270 bits (146), Expect = 4e-71
Identities = 190/211 (90%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 1042 CCATCCCCACCTGCTA-GACGGCGCAGGTCACCATCCCCACCTGCTA-GACGGCGCAGGT 1099
|||| ||||||| ||| || ||||||||||||||||||||||||||| || |||||||||
Sbjct 1012 CCATTCCCACCTTCTAGGA-GGCGCAGGTCACCATCCCCACCTGCTAGGA-GGCGCAGGT 1069
Query 1100 CACCATCACCACCTGCTAGACGGCACAGGTCTCCAACACCACCTGCAAGGCAGCGCAGGT 1159
||||||||||||||| |||||||| ||||| || | |||||||| |||| ||||||||
Sbjct 1070 CACCATCACCACCTGTTAGACGGCGTAGGTCACCGTCCCCACCTGCTAGGCCGCGCAGGT 1129
Query 1160 CACCATCGCCCCCTGCTAGGCGTCACCGTTCTCCACCGCCAGCTAGGCGGCGTAGGTCTC 1219
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 1130 CACCATCGCCCCCTGCTAGGCGTCGCCGTTCTCCACTGCCCTTTAGGCGGCGTAGGTCTC 1189
Query 1220 CTTCACCGCCAGCTAGGCGGCGTAGGTCTCC 1250
|||||||||||||||||||||| ||||||||
Sbjct 1190 CTTCACCGCCAGCTAGGCGGCGCAGGTCTCC 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110309349520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5