BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29310.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1 1212 0.0
Ahg933572 jgi|Araly1|933572|scaffold_401560.1 701 0.0
Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 322 3e-87
Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1 108 9e-23
> Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1
Length=809
Score = 1212 bits (656), Expect = 0.0
Identities = 759/810 (94%), Gaps = 2/810 (0%)
Strand=Plus/Plus
Query 2 CAAGCAAAATGGATAAGAGATGGAGTCTACAAGGTATGACTGCTCTTGTAACCGGTGCAG 61
|||| ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||
Sbjct 1 CAAGAAAAATGGATAAAAGATGGAGTCTTCAATGTATGACTGCTCTTGTGACCGGTGGAG 60
Query 62 CCAGTGGAATCGGGTATGCCATAGTAGAGGAGTTAGCAAGTTTTGGAGCTATAATCCATA 121
|||| ||||| || ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 61 CCAGCGGAATTGGTTATGCCATAGTAGAGGAGTTAGCTAGTTTTGGAGCTAGAATCCATG 120
Query 122 TATGTGACATCTCTGAAACTCTTCTCAGTCAAAGTTTAAGTGAATGGGAAAAGAAAGGGT 181
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TATGTGACATCTCTGAAACTCTTCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGT 180
Query 182 TTCAAGTGAGTGGTTCAATCTGTGATGTAGCTTCTCGGCCCGATAGAGAAAAACTGATGC 241
||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 181 TTCAAGTGAGTGGTTCAGTCTGTGATGTAACTTCTCGTCCCGATAGAGAAAAACTGATGC 240
Query 242 AAACCGTCTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGGTGTAA 301
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACCGTTTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGGTGTAC 300
Query 302 TACGTGGAAAGCCAACAACAGAATATGTGGCAGAGGATTTCTCTTACCACATCTCAACAA 361
| || || |||| |||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 301 TTCGCGGGAAGCTAACAACGGAATATGTGGCAGATGATTTCTCTTTTCACATCTCAACAA 360
Query 362 ATTTGGAACCAGCTTTCCATTTTAGCCAGCTTTCACATCTTCTTTTAAAGGCTTCAGGAT 421
|||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 361 ATTTGGAAGCTGCTTTCCATTTTAGCCAGCTTTCACATCCTCTCTTAAAGGCTTCAGGAT 420
Query 422 TTGGAAGCATCGTCTTTATGTCCTCTGCT-ACAGGGGTTGTATCAGTTCAATGTGGATCC 480
||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||
Sbjct 421 TTGGAAGCATCGTCTTTATGTCCTCTG-TCACAGGGATTGTATCAGTTGAATGTGGATCC 479
Query 481 ATTTATAGTCTAACTAAAGGAGCTTTGAACCAGTTAACTAGAAATTTAGCATGTGAATGG 540
|||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 480 ATTTATGGTCTAACGAAAGGAGCTTTGAATCAGTTAACTAGAAATTTGGCATGTGAATGG 539
Query 541 GCAAAAGACGGCATAAGAGCCAATGCTGTTGCACCTAATGTTGTCAAGACTCCTTTGTCT 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GCAAAAGATGGCATAAGAGCCAATGCTGTTGCACCTAATGTTGTCAAGACTCCTCTGTCT 599
Query 601 CAATCTTATCTCGAGGACGTCGGTTTCAAGGAGGCATTGTTCAGTAGAACTCCACTTGGT 660
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 600 CAATCTTATCTCGAGGACGTCGGTTTCAAGGAGGGATTGTTGAGTAGAACTCCACTTGGT 659
Query 661 CGCGCTGGAGAGCCGAATGAAGTTGCATCACTAGTGGTCTTCTTGTGTCTACCAGCAGCT 720
|| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 CGTGTTGGAGAGCCAAATGAAGTTGCATCACTAGTGGTCTTCTTGTGTCTACCTGCAGCT 719
Query 721 TCTTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGCCTTCTCT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TCTTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGGATTCTCC 779
Query 781 TATAAGCCACAGGCTTGATAATGGCCTTGT 810
||| |||||||||||||||||| |||||||
Sbjct 780 TATCAGCCACAGGCTTGATAATAGCCTTGT 809
> Ahg933572 jgi|Araly1|933572|scaffold_401560.1
Length=830
Score = 701 bits (379), Expect = 0.0
Identities = 682/826 (83%), Gaps = 29/826 (4%)
Strand=Plus/Plus
Query 7 AAAATGGAT-AAGAGATGGAGTCTACAAGGTATGACTGCTCTTGTAACCGGTGCAGCCAG 65
||||||||| || ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 18 AAAATGGATCAA-AGATGGAGTCTTCAGGGTATGACTGCTCTTGTAACCGGTGGAGCCAG 76
Query 66 TGGAATCGGGTATGCCATAGTAGAGGAGTTAGCAAGTTTTGGAGCTATAATCCATATATG 125
||||||||||||||||||||||||||| |||| || ||||||||| ||||||| ||||
Sbjct 77 CGGAATCGGGTATGCCATAGTAGAGGAGCTAGCTGGTCTTGGAGCTAGAATCCATGTATG 136
Query 126 TGACATCTCTGAAACTCTTCTCAGTCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCA 185
|| || |||||||| || |||| ||||||||||| ||||||||||||||| |||||||
Sbjct 137 CGATATATCTGAAACACTCCTCAACCAAAGTTTAAGCGAATGGGAAAAGAAACGGTTTCA 196
Query 186 AGTGAGTGGTTCAATCTGTGATGTAGCTTCTCGGCCCGATAGAGAAAAACTGATGCAAAC 245
||| ||||||||||||||||||||| | |||| |||| || |||| ||| |||||||
Sbjct 197 AGTAAGTGGTTCAATCTGTGATGTAACCTCTCATTCCGAGAGGGAAACACTTATGCAAAA 256
Query 246 CGTCTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGGTGTAATACG 305
|||||| || |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||
Sbjct 257 CGTCTCAACGATGTTTGATGGCAAACTGAACATTCTTGTGAACAACGCTGGCGTAATTCG 316
Query 306 TGGAAAGCCAACAACAGAATATGTGGCAGAGGATTTCTC-TTACCACATCTCAACAAATT 364
||||||||||| ||||||||||||| | |||||||| || ||| || |||||||| |
Sbjct 317 CACAAAGCCAACAATAGAATATGTGGCACACGATTTCTCGTT-CCATATTTCAACAAACT 375
Query 365 TGGAACCAGCTT-TCCATTTTAGCCAGCTTTCACATCTTCTTTTAAAGGCTTCAGG-ATT 422
||||| | |||| | || ||||||| ||||| |||| ||| |||| ||||| || |||
Sbjct 376 TGGAATCTGCTTAT-CACCTTAGCCAACTTTCTCATCCTCTCCTAAAAGCTTC-GGAATT 433
Query 423 TGGAAGCATCGTCTTTATGTCCTCTGCTACAGGGGTTGTATCAGTTCAATGTGGATCCAT 482
|||||||||||||||||| ||||||| | ||| ||||||||| | | |||||||| ||
Sbjct 434 TGGAAGCATCGTCTTTATTTCCTCTGTTGGAGGAGTTGTATCAATGGAGTGTGGATCTAT 493
Query 483 TTATAGTCTAACTAAAGGAGCTTTGAACCAGTTAACTAGAAA-TTTAGCATGTGAATGGG 541
|||||| |||| |||||||||||||| || || | | ||| ||| |||||||||||||
Sbjct 494 ATATAGTTTAACGAAAGGAGCTTTGAATCAACTAGC-AAAAACTTTGGCATGTGAATGGG 552
Query 542 CAAAAGACGGCATAAGAGCCAA-TGCTGTTGCACCTAATGTTGTCAAGACTCCTTTGTCT 600
||| ||| ||||||||| |||| | ||||||| |||||| || || | ||| || || ||
Sbjct 553 CAAGAGATGGCATAAGAACCAACT-CTGTTGCTCCTAATTTTATCCATACTGCTATGGCT 611
Query 601 CAATC-TTATCTCGAGGACGTCGGTT-TCAAGGAG-GCATT-GTTCAGTAGAACTCCACT 656
||| | || | || | |||| || || | || || | || ||| ||||||||||||||
Sbjct 612 CAA-CTTTTTTTCAAAGACGCCGATTAT-GAGAAGAG-TTTGGTT-AGTAGAACTCCACT 667
Query 657 TGGTCGCGCTGGAGAGCCGAATGA-AG-TTGCATCACTAGTGG-TCTTCTTGTGTCTACC 713
|||||||||||||||||| || || || |||||||||| |||| | |||| ||||||||
Sbjct 668 TGGTCGCGCTGGAGAGCC-AA-GAGAGGTTGCATCACTTGTGGCTTTTCTA-TGTCTACC 724
Query 714 AGCAGCTTCTTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGC 773
|| ||||| |||||||||||||| ||||||||| ||||||| ||| ||||||| || |
Sbjct 725 TGCTGCTTCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAACGG 784
Query 774 CTTCTCTTATAAGCCACAGGCTTGATA-ATG-GCCTTGT-TGTGTT 816
||||| |||||||||||||| ||| | ||| | ||||| ||||||
Sbjct 785 TTTCTCCTATAAGCCACAGGCCTGAGAGATGAGACTTGTGTGTGTT 830
> Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2
Length=1329
Score = 322 bits (174), Expect = 3e-87
Identities = 249/285 (87%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 7 AAA-ATGGAT-A-AG-AGATGGAGTCTACAAGGTATGACTGCTCTTGTAACCGGTGCAGC 62
||| |||||| | || ||||||||||| |||||||||||||||||||| || |||| |||
Sbjct 29 AAAGATGGATAACAGCAGATGGAGTCTTCAAGGTATGACTGCTCTTGTGACTGGTGGAGC 88
Query 63 CAGTGGAATCGGGTATGCCATAGTAGAGGAGTTAGCAAGTTTTGGAGCTATAA-TCCATA 121
| ||||||||| ||||||||||||||||| |||| ||||||| || | || |||||
Sbjct 89 GGGAGGAATCGGGCATGCCATAGTAGAGGAGCTAGCCGGTTTTGGGGCCA-AAGTCCATG 147
Query 122 TATGTGACATCTCTGAAACTCTTCTCAGTCAAAGTTTAAGTGAATGGGAAAAGAAAGGGT 181
|||| ||||| |||||||| || |||| ||||||||||| |||||||||||||||||||
Sbjct 148 TATGCGACATATCTGAAACACTGCTCAACCAAAGTTTAAGAGAATGGGAAAAGAAAGGGT 207
Query 182 TTCAAGTGAGTGGTTCAATCTGTGATGTAGCTTCTCGGCCCGATAGAGAAAAACTGATGC 241
||||||||||||||||||||||| ||||| | ||||| |||| ||||||| ||| ||||
Sbjct 208 TTCAAGTGAGTGGTTCAATCTGTAATGTATCCTCTCGTTCCGAGAGAGAAACACTCATGC 267
Query 242 AAACCGTCTCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAA 286
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 268 AAACCGTCTCCTCGCTGTTTGATGGCAAACTGAACATTCTTGTAA 312
> Ahg481853 jgi|Araly1|481853|fgenesh2_kg.4__913__AT2G29370.1
Length=819
Score = 108 bits (58), Expect = 9e-23
Identities = 103/124 (83%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 661 CGCGCTGGAGAGCCGAATGAAGT-TGCATCACTAGTGGTC--TTCTTGTGTCTACCAGCA 717
|||| ||||||| | |||||||| | |||| || |||| | ||| | ||||| || |||
Sbjct 679 CGCGTTGGAGAGGCAAATGAAGTAT-CATCGCTTGTGG-CATTTC-TATGTCTTCCTGCA 735
Query 718 GCTTCTTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGCCTTC 777
||||||||||||||||||||||||||||| ||||||| ||||||||| |||| | |||
Sbjct 736 GCTTCTTATATTACTGGTCAAACCATTTGCGTTGATGGAGGTTTCACTATTAACGGTTTC 795
Query 778 TCTT 781
||||
Sbjct 796 TCTT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5