BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29420.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333357 jgi|Araly1|333357|fgenesh1_pm.C_scaffold_558000002 998 0.0
Ahg320706 jgi|Araly1|320706|fgenesh1_pm.C_scaffold_4000763 983 0.0
Ahg911609 jgi|Araly1|911609|Al_scaffold_0001_1863 774 0.0
> Ahg333357 jgi|Araly1|333357|fgenesh1_pm.C_scaffold_558000002
Length=684
Score = 998 bits (540), Expect = 0.0
Identities = 619/657 (94%), Gaps = 6/657 (1%)
Strand=Plus/Plus
Query 29 ATGGCGGAGAGATCA-AATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTT 87
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGAGATCAGAA-TCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTT 59
Query 88 TAGTCGGAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCGTATGAGTTCCT-GGAGC 146
|||||| ||||||||||||||||||||||||||||||||||| || || || || |||
Sbjct 60 TAGTCGTAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCTTACGAATT-CTCAGAGG 118
Query 147 AAGATATCACAAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTCATAAGATGATTC 206
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 AAGATATCACTAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTTATAAGATGATTC 178
Query 207 CGGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTG 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTG 238
Query 267 ATGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAA-CTATGGCT 325
|||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 239 ATGAGACTTGGAGAGACAATCCGATTCTGCCTCAAGATCCGTATGAGA-AAGCTATGGCT 297
Query 326 CGATTCTGGTCTAAATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTTGTGGGG 385
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 298 CGATTCTGGGCTAAATTTGTTGATGAACAGATTTATGTGACGGCGATGAAAGTGGTGGGG 357
Query 386 AAGACCGGAAAAGAGAGAGATGCTGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTG 445
|||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 AAGATCGGAGAAGAGAGAGATGCGGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTG 417
Query 446 GAGAAAGAGCTTGTTGGGAAAGATTTTCTCGGTGGGAAAAGTTTAGGGTTTGTGGATATT 505
||||||||||||||||||||||||||| | || |||| |||||| |||||||| ||||||
Sbjct 418 GAGAAAGAGCTTGTTGGGAAAGATTTTTTTGGAGGGAGAAGTTTGGGGTTTGTAGATATT 477
Query 506 GTGGCGACTTTGGTGGCGTTTTGGCTGATGAGAACGGAGGAGATCGTCGGGGTAAAGGTG 565
||||| || ||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 478 GTGGCCACGTTGGTGGCGTTTTGGCTGATGAGGACGGAGGAGATCGTCGGAGTTAAGGTT 537
Query 566 GTTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGTAATGAT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GTTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGAAATGAT 597
Query 626 GTTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTTAAGTACATTAGAGCTCGT 682
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 598 GTTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTCCAGTACATCAGAGCTCGT 654
> Ahg320706 jgi|Araly1|320706|fgenesh1_pm.C_scaffold_4000763
Length=696
Score = 983 bits (532), Expect = 0.0
Identities = 614/654 (94%), Gaps = 4/654 (1%)
Strand=Plus/Plus
Query 29 ATGGCGGAGAGATCAAATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTTT 88
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGGAGAGATCAGATTCAGAGGAAGTGAAGCTTCTGGGAATGTGGGCGAGTCCTTTT 60
Query 89 AGTCGGAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCGTATGAGTTCCT-GGAGCA 147
||||| ||||||||||||||||||||||||||||||||||| || || || || ||| |
Sbjct 61 AGTCGTAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCTTACGAATT-CTCAGAGGA 119
Query 148 AGATATCACAAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTCATAAGATGATTCC 207
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 AGATATCACTAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTTATAAGATGATTCC 179
Query 208 GGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTGA 267
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 GGTTCTTGTTCATACTGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAATATATTGA 239
Query 268 TGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAA-CTATGGCTC 326
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 240 TGAGACTTGGAGAGACAATCCGATTCTGCCTCAAGATCCGTATGAGA-AAGCTATGGCTC 298
Query 327 GATTCTGGTCTAAATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTTGTGGGGA 386
|||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 299 GATTCTGGGCTAAATTTGTTGATGAACAGATTTATGTGACGGCGATGAAAGTGGTGGGGA 358
Query 387 AGACCGGAAAAGAGAGAGATGCTGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGG 446
||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATCGGAGAAGAGAGAGATGCGGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGG 418
Query 447 AGAAAGAGCTTGTTGGGAAAGATTTTCTCGGTGGGAAAAGTTTAGGGTTTGTGGATATTG 506
|||||||||||||||||||||||||| | || |||| |||||| |||||||| |||||||
Sbjct 419 AGAAAGAGCTTGTTGGGAAAGATTTTTTTGGAGGGAGAAGTTTGGGGTTTGTAGATATTG 478
Query 507 TGGCGACTTTGGTGGCGTTTTGGCTGATGAGAACGGAGGAGATCGTCGGGGTAAAGGTGG 566
|||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 479 TGGCCACGTTGGTGGCGTTTTGGCTGATGAGGACGGAGGAGATCGTCGGAGTTAAGGTTG 538
Query 567 TTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGTAATGATG 626
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGAAATGATG 598
Query 627 TTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTTAAGTACATTAGAGCTC 680
||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 599 TTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTCCAGTACATCAGAGCTC 652
> Ahg911609 jgi|Araly1|911609|Al_scaffold_0001_1863
Length=624
Score = 774 bits (419), Expect = 0.0
Identities = 498/537 (93%), Gaps = 2/537 (0%)
Strand=Plus/Plus
Query 29 ATGGCGGAGAGATCAAATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTTT 88
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGAGATCATATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTTT 60
Query 89 AGTCGGAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCGTATGAGTTCCT-GGAGCA 147
||||| |||||||||||||||| ||| |||||||||||||| || || || || ||| |
Sbjct 61 AGTCGTAGGATTGAGATTGCTCCTACACTTAAAGGTGTTTCTTACGAATT-CTCAGAGGA 119
Query 148 AGATATCACAAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTCATAAGATGATTCC 207
||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 120 AGATATCACTAACAAGAGCTCTTTGTTGCTTCAGTTGAATCCGGTTTATAAGATGATTCC 179
Query 208 GGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTGA 267
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 GGTTCTTGTTCATAATGGTAAACCGATTTCTGAACCACTTGTGATTCTTGAGTATATTGA 239
Query 268 TGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAACTATGGCTCG 327
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 TGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAGCTATGGCTCG 299
Query 328 ATTCTGGTCTAAATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTTGTGGGGAA 387
||||||| ||||||| || |||||||| |||||||||||||| |||||||| ||||||||
Sbjct 300 ATTCTGGGCTAAATTTGTTGATGAACATATTTATGTGACGGCTATGAAAGTGGTGGGGAA 359
Query 388 GACCGGAAAAGAGAGAGATGCTGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGGA 447
|| | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATCAGAGAAGAGAGAGATGCGGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGGA 419
Query 448 GAAAGAGCTTGTTGGGAAAGATTTTCTCGGTGGGAAAAGTTTAGGGTTTGTGGATATTGT 507
|||||| || ||||||||||||||| | || |||| |||||| |||||||||||||||||
Sbjct 420 GAAAGAACTCGTTGGGAAAGATTTTTTTGGAGGGAGAAGTTTGGGGTTTGTGGATATTGT 479
Query 508 GGCGACTTTGGTGGCGTTTTGGCTGATGAGAACGGAGGAGATCGTCGGGGTAAAGGT 564
|||||| ||||||||||||||| ||||||| |||||||| |||||||| || |||||
Sbjct 480 GGCGACGTTGGTGGCGTTTTGGTTGATGAGGACGGAGGATATCGTCGGAGTTAAGGT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5